Wall clock time and date at job start Tue Mar 31 2020 20:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 H 1.08994 * 109.47496 * 303.05347 * 3 2 1 5 5 C 1.52998 * 109.46894 * 183.04795 * 3 2 1 6 6 N 1.46507 * 109.47017 * 185.00367 * 5 3 2 7 7 C 1.34777 * 119.99911 * 180.02562 * 6 5 3 8 8 O 1.21687 * 119.99829 * 354.94533 * 7 6 5 9 9 C 1.46760 * 120.00146 * 174.94247 * 7 6 5 10 10 C 1.36669 * 126.83983 * 5.02161 * 9 7 6 11 11 N 1.33321 * 107.78371 * 179.89515 * 10 9 7 12 12 C 1.30859 * 109.68488 * 0.37855 * 11 10 9 13 13 C 1.50699 * 125.41715 * 179.74373 * 12 11 10 14 14 N 1.34497 * 109.16332 * 359.76511 * 12 11 10 15 15 C 1.46496 * 126.47318 * 179.97438 * 14 12 11 16 16 N 1.46905 * 109.46871 * 63.05401 * 3 2 1 17 17 C 1.46896 * 111.00257 * 64.57749 * 16 3 2 18 18 C 1.50698 * 109.47216 * 179.97438 * 17 16 3 19 19 O 1.21290 * 120.00021 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99915 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99882 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00169 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00137 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00456 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99871 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47701 * 89.99657 * 25 23 21 27 27 H 1.48504 * 109.47011 * 210.00030 * 25 23 21 28 28 H 1.48498 * 109.47278 * 329.99235 * 25 23 21 29 29 H 1.08992 * 109.47456 * 64.59199 * 1 2 3 30 30 H 1.09003 * 109.46907 * 184.59651 * 1 2 3 31 31 H 1.09004 * 109.46773 * 304.58857 * 1 2 3 32 32 H 1.09006 * 109.46757 * 240.00444 * 2 1 3 33 33 H 1.08999 * 109.47127 * 120.00468 * 2 1 3 34 34 H 1.09001 * 109.47464 * 305.00173 * 5 3 2 35 35 H 1.08999 * 109.47282 * 65.00662 * 5 3 2 36 36 H 0.96999 * 119.99510 * 0.02562 * 6 5 3 37 37 H 1.07996 * 126.11124 * 359.97438 * 10 9 7 38 38 H 1.08994 * 109.47046 * 270.02139 * 13 12 11 39 39 H 1.08998 * 109.47162 * 30.02873 * 13 12 11 40 40 H 1.09007 * 109.46901 * 150.02497 * 13 12 11 41 41 H 1.09000 * 109.47037 * 272.21408 * 15 14 12 42 42 H 1.08998 * 109.47550 * 32.21100 * 15 14 12 43 43 H 1.09002 * 109.47384 * 152.21743 * 15 14 12 44 44 H 1.00897 * 110.99869 * 188.53102 * 16 3 2 45 45 H 1.09004 * 109.47295 * 299.93115 * 17 16 3 46 46 H 1.09002 * 109.47093 * 59.92657 * 17 16 3 47 47 H 0.96994 * 120.00230 * 0.02562 * 20 18 17 48 48 H 0.96994 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6327 1.9719 -0.8613 5 6 3.5681 1.4431 -0.0767 6 7 4.0625 2.8170 0.0435 7 6 5.3871 3.0625 0.0024 8 8 6.1762 2.1373 -0.0420 9 6 5.8776 4.4457 0.0109 10 6 5.1286 5.5799 0.1535 11 7 5.9572 6.6234 0.1083 12 6 7.1849 6.2043 -0.0630 13 6 8.4021 7.0865 -0.1695 14 7 7.1877 4.8610 -0.1295 15 6 8.3586 4.0007 -0.3161 16 7 1.6115 2.1133 1.2347 17 6 2.2300 1.4920 2.4134 18 6 1.7684 2.2056 3.6578 19 8 0.9994 3.1396 3.5714 20 7 2.2101 1.8060 4.8669 21 6 1.7897 2.4549 5.9990 22 1 1.1050 3.2865 5.9221 23 6 2.2447 2.0426 7.2455 24 7 1.8421 2.6648 8.3308 25 14 3.4296 0.6047 7.3786 26 1 4.8258 1.1057 7.3106 27 1 3.2168 -0.0941 8.6716 28 1 3.1881 -0.3410 6.2594 29 1 -0.3634 0.4409 -0.9282 30 1 -0.3633 -1.0244 0.0824 31 1 -0.3633 0.5834 0.8461 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9729 0.8390 0.7352 35 1 3.8841 1.0257 -1.0327 36 1 3.4365 3.5498 0.1527 37 1 4.0571 5.6232 0.2813 38 1 8.5701 7.3492 -1.2138 39 1 8.2449 7.9943 0.4130 40 1 9.2717 6.5538 0.2156 41 1 8.5470 3.8695 -1.3817 42 1 9.2276 4.4630 0.1522 43 1 8.1726 3.0293 0.1422 44 1 1.8140 3.1011 1.1985 45 1 1.9375 0.4433 2.4670 46 1 3.3149 1.5630 2.3343 47 1 2.8254 1.0594 4.9360 48 1 2.1600 2.3772 9.2008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567973997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:42 Heat of formation + Delta-G solvation = -6.277416 kcal Electronic energy + Delta-G solvation = -29623.771995 eV Core-core repulsion = 25522.027325 eV Total energy + Delta-G solvation = -4101.744671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50973 -39.88742 -38.64819 -37.39131 -34.73027 -34.02975 -33.85934 -32.21622 -32.07202 -31.62136 -29.28197 -27.81596 -27.13971 -26.43120 -24.17890 -23.75527 -22.61177 -20.74307 -20.41624 -19.90779 -19.29303 -18.42879 -18.11313 -16.82969 -16.55466 -16.37738 -15.97737 -15.60651 -15.28400 -14.77631 -14.61246 -14.32024 -14.18105 -14.15500 -13.74375 -13.65446 -13.47285 -13.35992 -13.17099 -13.11697 -12.84593 -12.67542 -12.65168 -12.48580 -12.07098 -12.02074 -11.69163 -11.42831 -11.15809 -10.95557 -10.68834 -10.60759 -10.58164 -10.06868 -9.97343 -9.96539 -9.56900 -9.41105 -8.68801 -8.62533 -8.24356 -8.16762 -6.30839 -3.82108 1.04987 2.16335 2.55404 3.02282 3.03059 3.07431 3.12953 3.15395 3.73632 4.04285 4.05839 4.11065 4.34684 4.46092 4.53551 4.65449 4.70389 4.82335 4.95858 5.00185 5.02819 5.12458 5.17229 5.20693 5.24806 5.25676 5.39404 5.45832 5.48535 5.63529 5.68158 5.76326 5.85122 5.88777 5.92410 6.00318 6.10060 6.18567 6.26481 6.49398 6.75751 6.98197 7.13781 7.43310 7.57920 7.66331 7.90407 8.14692 8.59574 8.95184 9.42758 9.82382 10.82251 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.003507 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.578906 B = 7982.348475 C = 9973.411457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.092 0.908 5 C 0.083 3.917 6 N -0.715 5.715 7 C 0.600 3.400 8 O -0.547 6.547 9 C -0.093 4.093 10 C 0.048 3.952 11 N -0.491 5.491 12 C 0.227 3.773 13 C -0.071 4.071 14 N -0.424 5.424 15 C 0.064 3.936 16 N -0.652 5.652 17 C 0.039 3.961 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.180 0.820 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.347 0.653 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.138 -0.916 -21.718 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.110 0.890 5 C -0.042 4.042 6 N -0.368 5.368 7 C 0.387 3.613 8 O -0.426 6.426 9 C -0.209 4.209 10 C -0.107 4.107 11 N -0.210 5.210 12 C -0.034 4.034 13 C -0.130 4.130 14 N -0.105 5.105 15 C -0.078 4.078 16 N -0.284 5.284 17 C -0.093 4.093 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.704 3.296 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.197 0.803 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.168 0.832 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.516 -0.592 -21.472 24.372 hybrid contribution 1.850 -1.419 0.313 2.352 sum 13.366 -2.011 -21.158 25.107 Atomic orbital electron populations 1.21660 0.94482 1.01257 1.02882 1.21501 0.97490 0.94118 1.01989 1.22000 0.90062 0.97439 0.94034 0.88953 1.22250 0.96710 0.82367 1.02907 1.45574 1.06364 1.10275 1.74548 1.16702 0.82542 0.86037 0.76044 1.90772 1.55169 1.45588 1.51085 1.20638 0.85142 0.95534 1.19628 1.22700 0.99824 0.86801 1.01421 1.70135 0.99224 1.31134 1.20506 1.23488 0.96377 0.80984 1.02594 1.20286 0.90543 0.98167 1.03958 1.45050 1.06918 1.07239 1.51308 1.22307 0.85537 0.96397 1.03557 1.60225 1.61062 1.07359 0.99775 1.21830 0.96958 0.99922 0.90600 1.19676 0.85669 0.87171 0.83891 1.90565 1.37408 1.30564 1.86111 1.42206 1.43088 1.31307 1.06326 1.19428 1.26872 1.14854 0.82157 0.86231 1.25026 0.97941 0.97979 0.95123 1.69619 1.43850 1.40581 0.98020 0.86699 0.81766 0.82567 0.78535 1.19713 1.20119 1.19479 0.93240 0.93412 0.90556 0.91742 0.91541 0.90602 0.90863 0.76178 0.80253 0.89706 0.88593 0.90534 0.90251 0.89465 0.87438 0.83250 0.89117 0.93397 0.79774 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.84 37.16 0.37 -1.13 16 2 C -0.11 -1.07 5.26 -26.73 -0.14 -1.21 16 3 C 0.08 0.75 2.73 -67.71 -0.18 0.56 16 4 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 5 C 0.08 0.85 4.49 -4.04 -0.02 0.83 16 6 N -0.72 -7.74 5.35 -61.59 -0.33 -8.07 16 7 C 0.60 7.84 7.78 -12.82 -0.10 7.74 16 8 O -0.55 -8.36 14.82 5.20 0.08 -8.28 16 9 C -0.09 -1.19 6.91 -82.14 -0.57 -1.75 16 10 C 0.05 0.60 11.37 -17.47 -0.20 0.40 16 11 N -0.49 -6.58 11.20 -10.58 -0.12 -6.70 16 12 C 0.23 2.51 7.88 -155.61 -1.23 1.29 16 13 C -0.07 -0.46 10.18 36.01 0.37 -0.09 16 14 N -0.42 -4.78 3.17 -117.28 -0.37 -5.15 16 15 C 0.06 0.52 10.56 59.84 0.63 1.15 16 16 N -0.65 -8.77 5.25 -107.99 -0.57 -9.34 16 17 C 0.04 0.62 5.36 -4.98 -0.03 0.60 16 18 C 0.45 10.00 7.82 -10.98 -0.09 9.92 16 19 O -0.56 -14.71 15.78 5.55 0.09 -14.63 16 20 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 21 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 24 N -0.88 -25.90 13.96 55.50 0.77 -25.12 16 25 Si 0.88 19.67 27.74 -169.99 -4.71 14.96 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.68 6.37 -51.93 -0.33 0.34 16 34 H 0.08 0.89 6.64 -51.93 -0.34 0.55 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.82 6.16 -40.82 -0.25 3.56 16 37 H 0.18 1.81 7.46 -52.49 -0.39 1.42 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.34 7.08 -51.92 -0.37 -0.03 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.47 7.08 -51.93 -0.37 0.10 16 43 H 0.11 1.09 6.28 -51.93 -0.33 0.76 16 44 H 0.35 4.75 7.13 -39.29 -0.28 4.47 16 45 H 0.09 1.32 6.36 -51.93 -0.33 0.98 16 46 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 47 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -36.45 389.98 -7.66 -44.11 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -6.88 Total: 15.90 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.43 Total: 10.58 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.67 Total: -68.52 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.16 Total: -22.91 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.45 -7.66 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567973997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.830 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds