Wall clock time and date at job start Tue Mar 31 2020 20:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 H 1.08994 * 109.47496 * 303.05347 * 3 2 1 5 5 C 1.52998 * 109.46894 * 183.04795 * 3 2 1 6 6 N 1.46507 * 109.47017 * 185.00367 * 5 3 2 7 7 C 1.34777 * 119.99911 * 180.02562 * 6 5 3 8 8 O 1.21687 * 119.99829 * 354.94533 * 7 6 5 9 9 C 1.46760 * 120.00146 * 174.94247 * 7 6 5 10 10 C 1.36669 * 126.83983 * 5.02161 * 9 7 6 11 11 N 1.33321 * 107.78371 * 179.89515 * 10 9 7 12 12 C 1.30859 * 109.68488 * 0.37855 * 11 10 9 13 13 C 1.50699 * 125.41715 * 179.74373 * 12 11 10 14 14 N 1.34497 * 109.16332 * 359.76511 * 12 11 10 15 15 C 1.46496 * 126.47318 * 179.97438 * 14 12 11 16 16 N 1.46905 * 109.46871 * 63.05401 * 3 2 1 17 17 C 1.46896 * 111.00257 * 64.57749 * 16 3 2 18 18 C 1.50698 * 109.47216 * 179.97438 * 17 16 3 19 19 O 1.21290 * 120.00021 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99915 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99882 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00169 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00137 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00456 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99871 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47701 * 89.99657 * 25 23 21 27 27 H 1.48504 * 109.47011 * 210.00030 * 25 23 21 28 28 H 1.48498 * 109.47278 * 329.99235 * 25 23 21 29 29 H 1.08992 * 109.47456 * 64.59199 * 1 2 3 30 30 H 1.09003 * 109.46907 * 184.59651 * 1 2 3 31 31 H 1.09004 * 109.46773 * 304.58857 * 1 2 3 32 32 H 1.09006 * 109.46757 * 240.00444 * 2 1 3 33 33 H 1.08999 * 109.47127 * 120.00468 * 2 1 3 34 34 H 1.09001 * 109.47464 * 305.00173 * 5 3 2 35 35 H 1.08999 * 109.47282 * 65.00662 * 5 3 2 36 36 H 0.96999 * 119.99510 * 0.02562 * 6 5 3 37 37 H 1.07996 * 126.11124 * 359.97438 * 10 9 7 38 38 H 1.08994 * 109.47046 * 270.02139 * 13 12 11 39 39 H 1.08998 * 109.47162 * 30.02873 * 13 12 11 40 40 H 1.09007 * 109.46901 * 150.02497 * 13 12 11 41 41 H 1.09000 * 109.47037 * 272.21408 * 15 14 12 42 42 H 1.08998 * 109.47550 * 32.21100 * 15 14 12 43 43 H 1.09002 * 109.47384 * 152.21743 * 15 14 12 44 44 H 1.00897 * 110.99869 * 188.53102 * 16 3 2 45 45 H 1.09004 * 109.47295 * 299.93115 * 17 16 3 46 46 H 1.09002 * 109.47093 * 59.92657 * 17 16 3 47 47 H 0.96994 * 120.00230 * 0.02562 * 20 18 17 48 48 H 0.96994 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6327 1.9719 -0.8613 5 6 3.5681 1.4431 -0.0767 6 7 4.0625 2.8170 0.0435 7 6 5.3871 3.0625 0.0024 8 8 6.1762 2.1373 -0.0420 9 6 5.8776 4.4457 0.0109 10 6 5.1286 5.5799 0.1535 11 7 5.9572 6.6234 0.1083 12 6 7.1849 6.2043 -0.0630 13 6 8.4021 7.0865 -0.1695 14 7 7.1877 4.8610 -0.1295 15 6 8.3586 4.0007 -0.3161 16 7 1.6115 2.1133 1.2347 17 6 2.2300 1.4920 2.4134 18 6 1.7684 2.2056 3.6578 19 8 0.9994 3.1396 3.5714 20 7 2.2101 1.8060 4.8669 21 6 1.7897 2.4549 5.9990 22 1 1.1050 3.2865 5.9221 23 6 2.2447 2.0426 7.2455 24 7 1.8421 2.6648 8.3308 25 14 3.4296 0.6047 7.3786 26 1 4.8258 1.1057 7.3106 27 1 3.2168 -0.0941 8.6716 28 1 3.1881 -0.3410 6.2594 29 1 -0.3634 0.4409 -0.9282 30 1 -0.3633 -1.0244 0.0824 31 1 -0.3633 0.5834 0.8461 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9729 0.8390 0.7352 35 1 3.8841 1.0257 -1.0327 36 1 3.4365 3.5498 0.1527 37 1 4.0571 5.6232 0.2813 38 1 8.5701 7.3492 -1.2138 39 1 8.2449 7.9943 0.4130 40 1 9.2717 6.5538 0.2156 41 1 8.5470 3.8695 -1.3817 42 1 9.2276 4.4630 0.1522 43 1 8.1726 3.0293 0.1422 44 1 1.8140 3.1011 1.1985 45 1 1.9375 0.4433 2.4670 46 1 3.3149 1.5630 2.3343 47 1 2.8254 1.0594 4.9360 48 1 2.1600 2.3772 9.2008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567973997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:41 Heat of formation + Delta-G solvation = -35.445810 kcal Electronic energy + Delta-G solvation = -29625.036832 eV Core-core repulsion = 25522.027325 eV Total energy + Delta-G solvation = -4103.009507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.35532 -40.93423 -40.19119 -38.62203 -36.03136 -35.56559 -34.78196 -33.77110 -33.07060 -32.92871 -30.17477 -28.81284 -28.09863 -27.47628 -25.87580 -24.67648 -23.47518 -21.76505 -21.46827 -21.06188 -20.72864 -20.12926 -18.98724 -18.26713 -17.42179 -17.26417 -17.11761 -16.87495 -16.59096 -16.29836 -15.68488 -15.60873 -15.29121 -15.09486 -14.94426 -14.66721 -14.41957 -14.30824 -14.24316 -14.20114 -14.03750 -13.80094 -13.64049 -13.34842 -13.16324 -13.14816 -12.92869 -12.68676 -12.43563 -12.28741 -12.00689 -11.78673 -11.55401 -11.51878 -11.47512 -11.02376 -10.81026 -10.44535 -10.31659 -10.25835 -9.54931 -9.38396 -8.42831 -6.02964 0.15819 1.26936 1.31689 1.37433 1.40350 1.67676 1.94310 2.17848 2.19609 2.20062 2.72599 3.13648 3.33561 3.39219 3.56987 3.70519 3.82626 3.89136 4.01649 4.10246 4.25497 4.26866 4.28973 4.34698 4.42366 4.49950 4.55216 4.64642 4.68595 4.69681 4.71941 4.94997 5.00487 5.01552 5.10001 5.20778 5.25522 5.39686 5.40756 5.50565 5.63459 5.88938 6.00775 6.01072 6.23623 6.35713 6.57781 6.79766 6.86907 6.97453 7.38443 7.94389 8.74772 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.003507 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.578906 B = 7982.348475 C = 9973.411457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.085 3.915 4 H 0.111 0.889 5 C 0.087 3.913 6 N -0.708 5.708 7 C 0.598 3.402 8 O -0.573 6.573 9 C -0.115 4.115 10 C 0.038 3.962 11 N -0.529 5.529 12 C 0.229 3.771 13 C -0.071 4.071 14 N -0.429 5.429 15 C 0.061 3.939 16 N -0.663 5.663 17 C 0.059 3.941 18 C 0.450 3.550 19 O -0.608 6.608 20 N -0.594 5.594 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.959 3.041 26 H -0.262 1.262 27 H -0.272 1.272 28 H -0.233 1.233 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.408 0.592 37 H 0.192 0.808 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.345 0.655 45 H 0.113 0.887 46 H 0.064 0.936 47 H 0.387 0.613 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.556 -3.066 -23.859 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.129 0.871 5 C -0.038 4.038 6 N -0.360 5.360 7 C 0.386 3.614 8 O -0.454 6.454 9 C -0.231 4.231 10 C -0.117 4.117 11 N -0.249 5.249 12 C -0.034 4.034 13 C -0.129 4.129 14 N -0.110 5.110 15 C -0.080 4.080 16 N -0.295 5.295 17 C -0.074 4.074 18 C 0.238 3.762 19 O -0.492 6.492 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.780 3.220 26 H -0.186 1.186 27 H -0.197 1.197 28 H -0.156 1.156 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.209 0.791 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.105 0.895 44 H 0.164 0.836 45 H 0.131 0.869 46 H 0.082 0.918 47 H 0.222 0.778 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.920 -2.759 -23.652 27.583 hybrid contribution 1.010 -0.611 0.899 1.484 sum 14.930 -3.370 -22.753 27.421 Atomic orbital electron populations 1.21617 0.95201 1.01221 1.02018 1.21534 0.96719 0.93645 1.03082 1.22066 0.89897 0.97836 0.92677 0.87060 1.22263 0.96505 0.81802 1.03223 1.45567 1.05868 1.10887 1.73636 1.16810 0.82934 0.85926 0.75775 1.90753 1.55860 1.46205 1.52615 1.20736 0.86153 0.95379 1.20844 1.22999 1.00604 0.86868 1.01231 1.70138 1.00559 1.31940 1.22257 1.24331 0.96991 0.81411 1.00620 1.20514 0.89368 0.97587 1.05398 1.45308 1.07121 1.07673 1.50869 1.22486 0.85430 0.95313 1.04732 1.60228 1.61459 1.07447 1.00395 1.21659 0.97671 0.99978 0.88046 1.20928 0.83825 0.86203 0.85207 1.90545 1.39055 1.32544 1.87041 1.42063 1.43925 1.31884 1.05639 1.19012 1.27239 1.14622 0.84669 0.92362 1.26040 0.99800 1.01469 0.93844 1.69794 1.45689 1.42923 0.98956 0.85442 0.78484 0.78316 0.79799 1.18630 1.19726 1.15627 0.92240 0.92688 0.93653 0.89154 0.91956 0.91591 0.89539 0.75485 0.79133 0.87784 0.88547 0.88094 0.88742 0.86403 0.89488 0.83566 0.86909 0.91787 0.77828 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.84 71.98 0.71 -1.93 16 2 C -0.11 -1.76 5.26 30.59 0.16 -1.59 16 3 C 0.09 1.46 2.73 44.91 0.12 1.58 16 4 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 5 C 0.09 1.56 4.49 86.38 0.39 1.95 16 6 N -0.71 -14.32 5.35 -466.99 -2.50 -16.81 16 7 C 0.60 15.12 7.78 86.47 0.67 15.80 16 8 O -0.57 -16.96 14.82 -4.31 -0.06 -17.02 16 9 C -0.11 -2.87 6.91 40.01 0.28 -2.59 16 10 C 0.04 0.95 11.37 84.10 0.96 1.91 16 11 N -0.53 -14.08 11.20 -187.39 -2.10 -16.18 16 12 C 0.23 4.78 7.88 138.20 1.09 5.87 16 13 C -0.07 -0.74 10.18 71.24 0.73 -0.02 16 14 N -0.43 -9.18 3.17 -524.95 -1.67 -10.84 16 15 C 0.06 0.89 10.56 127.77 1.35 2.24 16 16 N -0.66 -16.93 5.25 -495.58 -2.60 -19.53 16 17 C 0.06 1.75 5.36 85.56 0.46 2.21 16 18 C 0.45 20.14 7.82 87.66 0.69 20.83 16 19 O -0.61 -32.87 15.78 -3.06 -0.05 -32.92 16 20 N -0.59 -28.38 5.09 -306.99 -1.56 -29.94 16 21 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 22 H 0.06 4.08 7.39 -2.91 -0.02 4.06 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 24 N -0.93 -56.82 13.96 21.66 0.30 -56.52 16 25 Si 0.96 39.81 27.74 68.60 1.90 41.72 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 1.12 7.56 -2.38 -0.02 1.11 16 32 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.05 6.37 -2.39 -0.02 1.04 16 34 H 0.07 1.36 6.64 -2.39 -0.02 1.35 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.41 7.34 6.16 -92.71 -0.57 6.77 16 37 H 0.19 3.93 7.46 -2.91 -0.02 3.91 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.56 7.08 -2.38 -0.02 0.54 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 0.92 7.08 -2.39 -0.02 0.90 16 43 H 0.09 1.68 6.28 -2.39 -0.01 1.67 16 44 H 0.34 9.19 7.13 -89.70 -0.64 8.55 16 45 H 0.11 2.95 6.36 -2.38 -0.02 2.93 16 46 H 0.06 1.76 6.33 -2.39 -0.02 1.75 16 47 H 0.39 15.67 5.76 -92.71 -0.53 15.14 16 48 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -85.04 389.98 -0.20 -85.24 By element: Atomic # 1 Polarization: 46.03 SS G_CDS: -0.78 Total: 45.25 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 8.91 Total: 27.56 kcal Atomic # 7 Polarization: -139.70 SS G_CDS: -10.13 Total: -149.83 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.11 Total: -49.94 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.90 Total: 41.72 kcal Total: -85.04 -0.20 -85.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567973997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.792 kcal (2) G-P(sol) polarization free energy of solvation -85.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds