Wall clock time and date at job start Tue Mar 31 2020 20:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47215 * 2 1 4 4 H 1.08997 * 109.47531 * 56.48155 * 3 2 1 5 5 C 1.52998 * 109.47301 * 176.48349 * 3 2 1 6 6 N 1.46497 * 109.47521 * 175.00013 * 5 3 2 7 7 C 1.34777 * 120.00299 * 179.97438 * 6 5 3 8 8 O 1.21676 * 120.00146 * 4.91668 * 7 6 5 9 9 C 1.46771 * 120.00090 * 184.91087 * 7 6 5 10 10 C 1.36667 * 126.84366 * 354.12152 * 9 7 6 11 11 N 1.33318 * 107.78369 * 179.83688 * 10 9 7 12 12 C 1.30857 * 109.68496 * 0.43413 * 11 10 9 13 13 C 1.50700 * 125.41599 * 179.70370 * 12 11 10 14 14 N 1.34499 * 109.16358 * 359.72947 * 12 11 10 15 15 C 1.46497 * 126.47010 * 179.97438 * 14 12 11 16 16 N 1.46905 * 109.47233 * 296.48186 * 3 2 1 17 17 C 1.46902 * 110.99897 * 302.66320 * 16 3 2 18 18 C 1.50706 * 109.46826 * 185.33870 * 17 16 3 19 19 O 1.21291 * 120.00080 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99778 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99650 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00462 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99558 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99855 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00242 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47152 * 89.99782 * 25 23 21 27 27 H 1.48497 * 109.46944 * 209.99875 * 25 23 21 28 28 H 1.48495 * 109.47078 * 329.99793 * 25 23 21 29 29 H 1.08997 * 109.47657 * 65.03338 * 1 2 3 30 30 H 1.09004 * 109.47457 * 185.03497 * 1 2 3 31 31 H 1.08999 * 109.47165 * 305.03175 * 1 2 3 32 32 H 1.09000 * 109.46812 * 240.00041 * 2 1 3 33 33 H 1.08997 * 109.47665 * 120.00515 * 2 1 3 34 34 H 1.09003 * 109.47224 * 55.00106 * 5 3 2 35 35 H 1.09000 * 109.46988 * 294.99877 * 5 3 2 36 36 H 0.97003 * 119.99625 * 0.02562 * 6 5 3 37 37 H 1.08000 * 126.10427 * 359.97438 * 10 9 7 38 38 H 1.08995 * 109.47590 * 270.02650 * 13 12 11 39 39 H 1.08993 * 109.47068 * 30.03003 * 13 12 11 40 40 H 1.09001 * 109.46852 * 150.02786 * 13 12 11 41 41 H 1.09003 * 109.47167 * 273.85113 * 15 14 12 42 42 H 1.08997 * 109.47472 * 33.85601 * 15 14 12 43 43 H 1.08998 * 109.46736 * 153.85933 * 15 14 12 44 44 H 1.00906 * 110.99979 * 178.70761 * 16 3 2 45 45 H 1.08996 * 109.46834 * 305.34149 * 17 16 3 46 46 H 1.08998 * 109.46770 * 65.34563 * 17 16 3 47 47 H 0.97001 * 119.99792 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99549 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6261 1.9742 0.8567 5 6 3.5674 1.4434 0.0885 6 7 4.0627 2.8168 -0.0316 7 6 5.3869 3.0625 0.0191 8 8 6.1756 2.1376 0.0745 9 6 5.8777 4.4457 0.0074 10 6 5.1322 5.5783 -0.1633 11 7 5.9588 6.6226 -0.1044 12 6 7.1843 6.2046 0.0849 13 6 8.4003 7.0874 0.1989 14 7 7.1860 4.8618 0.1608 15 6 8.3546 4.0027 0.3668 16 7 1.6209 2.1100 -1.2397 17 6 2.1087 1.3835 -2.4196 18 6 1.7737 2.1644 -3.6643 19 8 1.1869 3.2223 -3.5769 20 7 2.1263 1.6873 -4.8744 21 6 1.8220 2.3979 -6.0066 22 1 1.2995 3.3398 -5.9289 23 6 2.1860 1.9062 -7.2542 24 7 1.8939 2.5871 -8.3396 25 14 3.0905 0.2773 -7.3887 26 1 2.1056 -0.8267 -7.5165 27 1 3.9702 0.2969 -8.5849 28 1 3.9147 0.0668 -6.1715 29 1 -0.3634 0.4337 -0.9316 30 1 -0.3634 -1.0237 0.0902 31 1 -0.3633 0.5899 0.8415 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9785 0.8371 -0.7187 35 1 3.8760 1.0284 1.0480 36 1 3.4376 3.5495 -0.1468 37 1 4.0639 5.6200 -0.3161 38 1 8.8306 7.2428 -0.7903 39 1 8.1129 8.0484 0.6252 40 1 9.1371 6.6093 0.8445 41 1 8.8218 3.7882 -0.5944 42 1 9.0700 4.5112 1.0131 43 1 8.0415 3.0695 0.8348 44 1 1.9278 3.0712 -1.2544 45 1 3.1892 1.2590 -2.3485 46 1 1.6323 0.4043 -2.4659 47 1 2.5953 0.8410 -4.9443 48 1 2.1477 2.2437 -9.2105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567973998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:46 Heat of formation + Delta-G solvation = -6.827737 kcal Electronic energy + Delta-G solvation = -29590.331267 eV Core-core repulsion = 25488.562732 eV Total energy + Delta-G solvation = -4101.768534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49174 -39.86581 -38.67447 -37.39662 -34.72961 -34.04122 -33.87036 -32.20176 -32.01826 -31.63114 -29.32443 -27.81988 -27.12192 -26.40243 -24.15583 -23.77974 -22.60911 -20.72428 -20.42080 -19.90125 -19.30268 -18.44077 -18.11483 -16.81939 -16.49225 -16.41696 -15.99958 -15.52146 -15.28340 -14.78697 -14.59254 -14.37716 -14.22232 -14.11346 -13.69833 -13.63522 -13.46079 -13.32739 -13.16465 -13.12035 -12.85492 -12.71503 -12.64316 -12.46479 -12.09406 -12.00449 -11.73617 -11.44545 -11.16332 -10.98069 -10.72838 -10.60296 -10.58182 -10.05755 -9.98111 -9.94253 -9.58040 -9.38692 -8.66750 -8.61247 -8.26820 -8.17917 -6.31651 -3.82983 1.07124 2.17964 2.57195 3.02730 3.03986 3.06570 3.14767 3.14894 3.71947 4.05984 4.07478 4.10831 4.36053 4.46572 4.54557 4.66575 4.69586 4.84207 4.93139 5.00591 5.04199 5.14827 5.19541 5.20476 5.23816 5.25164 5.38194 5.43943 5.49165 5.63737 5.68362 5.74202 5.86829 5.89870 5.91004 5.97307 6.11112 6.17072 6.28495 6.42913 6.77473 6.98550 7.15778 7.44040 7.56900 7.68172 7.92371 8.13730 8.58339 8.94072 9.41702 9.80784 10.81378 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008448 B = 0.003408 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.465165 B = 8214.036480 C =10126.189319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.093 0.907 5 C 0.083 3.917 6 N -0.715 5.715 7 C 0.600 3.400 8 O -0.547 6.547 9 C -0.093 4.093 10 C 0.048 3.952 11 N -0.491 5.491 12 C 0.227 3.773 13 C -0.071 4.071 14 N -0.425 5.425 15 C 0.066 3.934 16 N -0.653 5.653 17 C 0.039 3.961 18 C 0.449 3.551 19 O -0.566 6.566 20 N -0.589 5.589 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.878 3.122 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.181 0.819 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.348 0.652 45 H 0.048 0.952 46 H 0.092 0.908 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.268 -1.350 21.826 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.036 4.036 4 H 0.111 0.889 5 C -0.043 4.043 6 N -0.368 5.368 7 C 0.387 3.613 8 O -0.426 6.426 9 C -0.209 4.209 10 C -0.107 4.107 11 N -0.210 5.210 12 C -0.035 4.035 13 C -0.129 4.129 14 N -0.105 5.105 15 C -0.076 4.076 16 N -0.286 5.286 17 C -0.093 4.093 18 C 0.235 3.765 19 O -0.448 6.448 20 N -0.228 5.228 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.705 3.295 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.239 0.761 37 H 0.198 0.802 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.169 0.831 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.737 -0.878 21.630 24.164 hybrid contribution 1.679 -1.655 -0.423 2.395 sum 12.416 -2.533 21.207 24.704 Atomic orbital electron populations 1.21635 0.94431 1.00745 1.03214 1.21539 0.97486 0.94172 1.02179 1.22035 0.90108 0.97241 0.94179 0.88856 1.22241 0.96769 0.82405 1.02851 1.45573 1.06436 1.10301 1.74453 1.16700 0.82525 0.86038 0.76068 1.90776 1.55220 1.45607 1.51041 1.20643 0.85247 0.95559 1.19479 1.22709 0.99897 0.86796 1.01309 1.70132 0.99303 1.31108 1.20449 1.23484 0.96375 0.80991 1.02624 1.20283 0.90801 0.98163 1.03691 1.45047 1.07011 1.07285 1.51207 1.22274 0.85843 0.95843 1.03617 1.60340 1.62791 1.05940 0.99512 1.21838 0.98306 0.98714 0.90476 1.19690 0.84985 0.87919 0.83942 1.90563 1.44379 1.23783 1.86116 1.42199 1.52848 1.21495 1.06249 1.19431 1.35677 1.06196 0.82056 0.86223 1.25036 0.97800 0.98121 0.95120 1.69624 1.46177 1.38243 0.97964 0.86693 0.80279 0.84085 0.78484 1.19525 1.20163 1.19569 0.91087 0.93411 0.92944 0.91418 0.91631 0.90714 0.90842 0.76100 0.80210 0.89557 0.88681 0.90613 0.90014 0.89598 0.87752 0.83095 0.93437 0.89009 0.79735 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.72 37.15 0.36 -1.07 16 2 C -0.12 -1.08 5.08 -26.74 -0.14 -1.21 16 3 C 0.08 0.75 2.75 -67.71 -0.19 0.57 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.08 0.87 4.76 -4.04 -0.02 0.85 16 6 N -0.72 -7.98 5.31 -61.59 -0.33 -8.30 16 7 C 0.60 8.02 7.78 -12.81 -0.10 7.92 16 8 O -0.55 -8.52 14.88 5.21 0.08 -8.45 16 9 C -0.09 -1.21 6.91 -82.14 -0.57 -1.78 16 10 C 0.05 0.61 11.37 -17.47 -0.20 0.41 16 11 N -0.49 -6.68 11.20 -10.58 -0.12 -6.80 16 12 C 0.23 2.55 7.88 -155.61 -1.23 1.32 16 13 C -0.07 -0.47 10.18 36.01 0.37 -0.10 16 14 N -0.42 -4.86 3.17 -117.27 -0.37 -5.23 16 15 C 0.07 0.55 10.48 59.85 0.63 1.18 16 16 N -0.65 -8.89 5.62 -107.99 -0.61 -9.50 16 17 C 0.04 0.62 5.35 -4.97 -0.03 0.59 16 18 C 0.45 9.98 7.81 -10.98 -0.09 9.89 16 19 O -0.57 -14.74 15.66 5.55 0.09 -14.66 16 20 N -0.59 -14.04 5.09 -10.96 -0.06 -14.09 16 21 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16 24 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 25 Si 0.88 19.61 27.74 -169.99 -4.71 14.89 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 29 H 0.07 0.88 7.85 -51.93 -0.41 0.48 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.67 6.29 -51.93 -0.33 0.34 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.90 6.61 -51.93 -0.34 0.56 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.98 6.08 -40.82 -0.25 3.73 16 37 H 0.18 1.88 7.47 -52.49 -0.39 1.49 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.32 7.11 -51.93 -0.37 -0.05 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.43 7.14 -51.93 -0.37 0.06 16 43 H 0.10 1.01 6.40 -51.93 -0.33 0.68 16 44 H 0.35 4.94 6.68 -39.29 -0.26 4.68 16 45 H 0.05 0.71 6.22 -51.93 -0.32 0.39 16 46 H 0.09 1.32 6.49 -51.93 -0.34 0.98 16 47 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -36.46 390.02 -7.70 -44.16 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -6.89 Total: 16.32 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -1.44 Total: 10.85 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.71 Total: -69.01 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.16 Total: -23.10 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.46 -7.70 -44.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567973998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.336 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds