Wall clock time and date at job start Tue Mar 31 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47215 * 2 1 4 4 H 1.08997 * 109.47531 * 56.48155 * 3 2 1 5 5 C 1.52998 * 109.47301 * 176.48349 * 3 2 1 6 6 N 1.46497 * 109.47521 * 175.00013 * 5 3 2 7 7 C 1.34777 * 120.00299 * 179.97438 * 6 5 3 8 8 O 1.21676 * 120.00146 * 4.91668 * 7 6 5 9 9 C 1.46771 * 120.00090 * 184.91087 * 7 6 5 10 10 C 1.36667 * 126.84366 * 354.12152 * 9 7 6 11 11 N 1.33318 * 107.78369 * 179.83688 * 10 9 7 12 12 C 1.30857 * 109.68496 * 0.43413 * 11 10 9 13 13 C 1.50700 * 125.41599 * 179.70370 * 12 11 10 14 14 N 1.34499 * 109.16358 * 359.72947 * 12 11 10 15 15 C 1.46497 * 126.47010 * 179.97438 * 14 12 11 16 16 N 1.46905 * 109.47233 * 296.48186 * 3 2 1 17 17 C 1.46902 * 110.99897 * 302.66320 * 16 3 2 18 18 C 1.50706 * 109.46826 * 185.33870 * 17 16 3 19 19 O 1.21291 * 120.00080 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99778 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99650 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00462 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99558 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99855 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00242 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47152 * 89.99782 * 25 23 21 27 27 H 1.48497 * 109.46944 * 209.99875 * 25 23 21 28 28 H 1.48495 * 109.47078 * 329.99793 * 25 23 21 29 29 H 1.08997 * 109.47657 * 65.03338 * 1 2 3 30 30 H 1.09004 * 109.47457 * 185.03497 * 1 2 3 31 31 H 1.08999 * 109.47165 * 305.03175 * 1 2 3 32 32 H 1.09000 * 109.46812 * 240.00041 * 2 1 3 33 33 H 1.08997 * 109.47665 * 120.00515 * 2 1 3 34 34 H 1.09003 * 109.47224 * 55.00106 * 5 3 2 35 35 H 1.09000 * 109.46988 * 294.99877 * 5 3 2 36 36 H 0.97003 * 119.99625 * 0.02562 * 6 5 3 37 37 H 1.08000 * 126.10427 * 359.97438 * 10 9 7 38 38 H 1.08995 * 109.47590 * 270.02650 * 13 12 11 39 39 H 1.08993 * 109.47068 * 30.03003 * 13 12 11 40 40 H 1.09001 * 109.46852 * 150.02786 * 13 12 11 41 41 H 1.09003 * 109.47167 * 273.85113 * 15 14 12 42 42 H 1.08997 * 109.47472 * 33.85601 * 15 14 12 43 43 H 1.08998 * 109.46736 * 153.85933 * 15 14 12 44 44 H 1.00906 * 110.99979 * 178.70761 * 16 3 2 45 45 H 1.08996 * 109.46834 * 305.34149 * 17 16 3 46 46 H 1.08998 * 109.46770 * 65.34563 * 17 16 3 47 47 H 0.97001 * 119.99792 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99549 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6261 1.9742 0.8567 5 6 3.5674 1.4434 0.0885 6 7 4.0627 2.8168 -0.0316 7 6 5.3869 3.0625 0.0191 8 8 6.1756 2.1376 0.0745 9 6 5.8777 4.4457 0.0074 10 6 5.1322 5.5783 -0.1633 11 7 5.9588 6.6226 -0.1044 12 6 7.1843 6.2046 0.0849 13 6 8.4003 7.0874 0.1989 14 7 7.1860 4.8618 0.1608 15 6 8.3546 4.0027 0.3668 16 7 1.6209 2.1100 -1.2397 17 6 2.1087 1.3835 -2.4196 18 6 1.7737 2.1644 -3.6643 19 8 1.1869 3.2223 -3.5769 20 7 2.1263 1.6873 -4.8744 21 6 1.8220 2.3979 -6.0066 22 1 1.2995 3.3398 -5.9289 23 6 2.1860 1.9062 -7.2542 24 7 1.8939 2.5871 -8.3396 25 14 3.0905 0.2773 -7.3887 26 1 2.1056 -0.8267 -7.5165 27 1 3.9702 0.2969 -8.5849 28 1 3.9147 0.0668 -6.1715 29 1 -0.3634 0.4337 -0.9316 30 1 -0.3634 -1.0237 0.0902 31 1 -0.3633 0.5899 0.8415 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9785 0.8371 -0.7187 35 1 3.8760 1.0284 1.0480 36 1 3.4376 3.5495 -0.1468 37 1 4.0639 5.6200 -0.3161 38 1 8.8306 7.2428 -0.7903 39 1 8.1129 8.0484 0.6252 40 1 9.1371 6.6093 0.8445 41 1 8.8218 3.7882 -0.5944 42 1 9.0700 4.5112 1.0131 43 1 8.0415 3.0695 0.8348 44 1 1.9278 3.0712 -1.2544 45 1 3.1892 1.2590 -2.3485 46 1 1.6323 0.4043 -2.4659 47 1 2.5953 0.8410 -4.9443 48 1 2.1477 2.2437 -9.2105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567973998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:45 Heat of formation + Delta-G solvation = -36.095734 kcal Electronic energy + Delta-G solvation = -29591.600422 eV Core-core repulsion = 25488.562732 eV Total energy + Delta-G solvation = -4103.037690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36107 -40.93558 -40.21708 -38.63613 -36.04514 -35.58964 -34.80838 -33.77543 -33.00679 -32.93721 -30.23340 -28.81574 -28.09401 -27.47637 -25.85673 -24.69260 -23.48461 -21.78050 -21.48114 -21.06141 -20.73666 -20.13788 -19.01925 -18.26708 -17.40566 -17.30359 -17.08971 -16.91926 -16.54538 -16.30646 -15.72627 -15.59076 -15.35060 -15.09224 -14.93364 -14.63914 -14.41114 -14.30538 -14.23681 -14.21624 -14.07450 -13.77370 -13.62154 -13.37597 -13.18966 -13.14301 -12.91266 -12.72480 -12.44624 -12.29365 -12.01589 -11.79365 -11.56712 -11.52825 -11.49165 -11.03409 -10.81742 -10.45186 -10.32271 -10.26393 -9.55646 -9.39633 -8.43289 -6.03624 0.15200 1.27190 1.32036 1.36884 1.40463 1.66879 1.92951 2.17022 2.18896 2.19933 2.73309 3.12827 3.32777 3.38679 3.56494 3.71269 3.82283 3.88934 3.99228 4.08813 4.23998 4.24737 4.28599 4.33366 4.42751 4.50517 4.55918 4.64345 4.68207 4.69113 4.70790 4.96557 4.99865 5.00636 5.08976 5.19930 5.24852 5.39001 5.40179 5.50068 5.61092 5.88217 6.00321 6.00693 6.22481 6.33474 6.56894 6.79050 6.85968 6.96535 7.37438 7.92960 8.74278 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008448 B = 0.003408 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.465165 B = 8214.036480 C =10126.189319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.084 3.916 4 H 0.112 0.888 5 C 0.086 3.914 6 N -0.708 5.708 7 C 0.597 3.403 8 O -0.574 6.574 9 C -0.115 4.115 10 C 0.038 3.962 11 N -0.529 5.529 12 C 0.229 3.771 13 C -0.070 4.070 14 N -0.429 5.429 15 C 0.063 3.937 16 N -0.663 5.663 17 C 0.057 3.943 18 C 0.449 3.551 19 O -0.609 6.609 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.058 0.942 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.961 3.039 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.238 1.238 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.408 0.592 37 H 0.191 0.809 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.343 0.657 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.387 0.613 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.329 -3.760 23.954 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.026 4.026 4 H 0.129 0.871 5 C -0.039 4.039 6 N -0.360 5.360 7 C 0.385 3.615 8 O -0.455 6.455 9 C -0.231 4.231 10 C -0.117 4.117 11 N -0.248 5.248 12 C -0.033 4.033 13 C -0.128 4.128 14 N -0.110 5.110 15 C -0.077 4.077 16 N -0.296 5.296 17 C -0.075 4.075 18 C 0.237 3.763 19 O -0.494 6.494 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.076 0.924 23 C -0.212 4.212 24 N -0.573 5.573 25 Si 0.781 3.219 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.161 1.161 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.208 0.792 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.163 0.837 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.223 0.777 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.785 -3.305 23.797 27.215 hybrid contribution 0.967 -0.754 -1.009 1.588 sum 13.752 -4.059 22.788 26.923 Atomic orbital electron populations 1.21600 0.94996 1.01314 1.01912 1.21573 0.96846 0.93475 1.03347 1.22119 0.89848 0.97856 0.92744 0.87055 1.22268 0.96683 0.81757 1.03153 1.45578 1.05938 1.10959 1.73524 1.16817 0.82926 0.85945 0.75801 1.90753 1.55909 1.46229 1.52597 1.20738 0.86314 0.95384 1.20678 1.22992 1.00639 0.86913 1.01173 1.70134 1.00650 1.31876 1.22184 1.24343 0.96981 0.81413 1.00593 1.20514 0.89537 0.97787 1.05007 1.45308 1.07194 1.07730 1.50765 1.22460 0.85416 0.95372 1.04498 1.60363 1.63256 1.05833 1.00131 1.21699 0.99477 0.98449 0.87850 1.20940 0.82657 0.87454 0.85274 1.90543 1.45754 1.26009 1.87052 1.42051 1.53765 1.22007 1.05543 1.19013 1.36822 1.05222 0.84588 0.92399 1.26064 0.98292 1.03014 0.93822 1.69801 1.47659 1.40967 0.98901 0.85423 0.79109 0.77671 0.79702 1.17810 1.19979 1.16117 0.93924 0.92303 0.92347 0.91657 0.89087 0.91807 0.89455 0.75462 0.79209 0.88548 0.88140 0.87674 0.89650 0.85899 0.89258 0.83668 0.91792 0.86621 0.77749 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.72 71.98 0.70 -1.77 16 2 C -0.11 -1.75 5.08 30.59 0.16 -1.59 16 3 C 0.08 1.46 2.75 44.91 0.12 1.59 16 4 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 5 C 0.09 1.60 4.76 86.38 0.41 2.01 16 6 N -0.71 -14.99 5.31 -467.00 -2.48 -17.47 16 7 C 0.60 15.63 7.78 86.47 0.67 16.30 16 8 O -0.57 -17.43 14.88 -4.27 -0.06 -17.49 16 9 C -0.11 -2.96 6.91 40.01 0.28 -2.68 16 10 C 0.04 0.98 11.37 84.10 0.96 1.94 16 11 N -0.53 -14.38 11.20 -187.39 -2.10 -16.48 16 12 C 0.23 4.89 7.88 138.20 1.09 5.98 16 13 C -0.07 -0.76 10.18 71.24 0.73 -0.04 16 14 N -0.43 -9.42 3.17 -524.94 -1.67 -11.09 16 15 C 0.06 0.95 10.48 127.77 1.34 2.29 16 16 N -0.66 -17.15 5.62 -495.57 -2.79 -19.94 16 17 C 0.06 1.72 5.35 85.56 0.46 2.18 16 18 C 0.45 20.09 7.81 87.66 0.68 20.77 16 19 O -0.61 -32.95 15.66 -3.06 -0.05 -33.00 16 20 N -0.59 -28.29 5.09 -306.99 -1.56 -29.85 16 21 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 22 H 0.06 4.06 7.39 -2.91 -0.02 4.03 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 25 Si 0.96 39.67 27.74 68.60 1.90 41.57 16 26 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.24 -8.48 6.52 99.48 0.65 -7.83 16 29 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.05 6.29 -2.39 -0.02 1.04 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.37 6.61 -2.39 -0.02 1.35 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.41 7.78 6.08 -92.71 -0.56 7.22 16 37 H 0.19 4.12 7.47 -2.91 -0.02 4.10 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 0.50 7.11 -2.39 -0.02 0.49 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.12 0.85 7.14 -2.39 -0.02 0.83 16 43 H 0.09 1.65 6.40 -2.39 -0.02 1.64 16 44 H 0.34 9.56 6.68 -89.69 -0.60 8.96 16 45 H 0.06 1.76 6.22 -2.39 -0.01 1.75 16 46 H 0.12 2.99 6.49 -2.39 -0.02 2.97 16 47 H 0.39 15.62 5.76 -92.71 -0.53 15.09 16 48 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -85.14 390.02 -0.32 -85.47 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -0.73 Total: 46.52 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 8.91 Total: 28.21 kcal Atomic # 7 Polarization: -140.99 SS G_CDS: -10.29 Total: -151.28 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.11 Total: -50.49 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.90 Total: 41.57 kcal Total: -85.14 -0.32 -85.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567973998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.371 kcal (2) G-P(sol) polarization free energy of solvation -85.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds