Wall clock time and date at job start Tue Mar 31 2020 20:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47113 * 2 1 4 4 C 1.53004 * 109.46964 * 119.99978 * 2 1 3 5 5 H 1.09005 * 109.46752 * 295.80557 * 4 2 1 6 6 C 1.52997 * 109.47031 * 175.81051 * 4 2 1 7 7 N 1.46502 * 109.47218 * 184.99710 * 6 4 2 8 8 C 1.34778 * 120.00396 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00169 * 180.02562 * 8 7 6 11 11 N 1.46506 * 109.47138 * 180.02562 * 10 8 7 12 12 C 1.34940 * 126.03844 * 125.00010 * 11 10 8 13 13 C 1.35319 * 107.74415 * 179.97438 * 12 11 10 14 14 C 1.39871 * 107.92134 * 359.97438 * 13 12 11 15 15 N 1.30840 * 108.19966 * 359.74152 * 14 13 12 16 16 N 1.46898 * 109.47317 * 55.80758 * 4 2 1 17 17 C 1.46902 * 110.99690 * 57.26943 * 16 4 2 18 18 C 1.50700 * 109.46738 * 177.08219 * 17 16 4 19 19 O 1.21288 * 120.00264 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99661 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99746 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99823 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99943 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99680 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47491 * 59.99568 * 25 23 21 27 27 H 1.48496 * 109.47131 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46803 * 299.99473 * 25 23 21 29 29 H 1.08996 * 109.47184 * 294.36624 * 1 2 3 30 30 H 1.08996 * 109.46815 * 54.36851 * 1 2 3 31 31 H 1.09002 * 109.46959 * 174.36917 * 1 2 3 32 32 H 1.08996 * 109.47693 * 239.99821 * 2 1 3 33 33 H 1.09004 * 109.47122 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47091 * 299.99971 * 3 2 1 35 35 H 1.09007 * 109.46890 * 59.99897 * 3 2 1 36 36 H 1.09003 * 109.47199 * 304.99975 * 6 4 2 37 37 H 1.09001 * 109.47462 * 65.00094 * 6 4 2 38 38 H 0.97003 * 119.99877 * 359.97438 * 7 6 4 39 39 H 1.09003 * 109.46857 * 299.99543 * 10 8 7 40 40 H 1.09002 * 109.47545 * 60.00002 * 10 8 7 41 41 H 1.07999 * 126.13102 * 359.95132 * 12 11 10 42 42 H 1.08004 * 126.03982 * 179.97438 * 13 12 11 43 43 H 1.07997 * 125.90008 * 180.02562 * 14 13 12 44 44 H 1.00901 * 110.99973 * 293.31843 * 16 4 2 45 45 H 1.09000 * 109.47024 * 57.08727 * 17 16 4 46 46 H 1.08996 * 109.47027 * 297.08409 * 17 16 4 47 47 H 0.96999 * 119.99734 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99907 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7392 -0.1658 2.1377 6 6 3.5663 -0.8132 1.1977 7 7 4.0463 -1.6067 2.3318 8 6 5.3670 -1.8230 2.4921 9 8 6.1579 -1.3611 1.6971 10 6 5.8606 -2.6397 3.6584 11 7 7.3222 -2.7276 3.6091 12 6 8.1723 -2.3793 4.5975 13 6 9.4314 -2.6111 4.1593 14 6 9.3479 -3.1190 2.8588 15 7 8.0837 -3.1948 2.5301 16 7 1.4694 -2.0739 1.3010 17 6 1.8007 -2.8317 0.0869 18 6 1.2611 -4.2337 0.2071 19 8 0.6602 -4.5687 1.2060 20 7 1.4472 -5.1156 -0.7951 21 6 0.9568 -6.3911 -0.6856 22 1 0.4218 -6.6894 0.2039 23 6 1.1491 -7.3004 -1.7185 24 7 1.8006 -6.9375 -2.8005 25 14 0.4803 -9.0382 -1.5696 26 1 -0.9946 -8.9887 -1.4052 27 1 0.8157 -9.8045 -2.7966 28 1 1.0880 -9.7029 -0.3888 29 1 -0.3633 0.4240 0.9361 30 1 -0.3633 0.5987 -0.8353 31 1 -0.3633 -1.0227 -0.1008 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.8703 -1.2902 0.2659 37 1 3.9926 0.1887 1.2490 38 1 3.4137 -1.9764 2.9675 39 1 5.5570 -2.1627 4.5903 40 1 5.4341 -3.6414 3.6070 41 1 7.8971 -1.9857 5.5648 42 1 10.3403 -2.4350 4.7156 43 1 10.1825 -3.4040 2.2354 44 1 0.4713 -2.0401 1.4451 45 1 2.8833 -2.8683 -0.0345 46 1 1.3541 -2.3435 -0.7792 47 1 1.9287 -4.8479 -1.5934 48 1 1.9346 -7.5722 -3.5217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568443328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:35 Heat of formation + Delta-G solvation = 9.691456 kcal Electronic energy + Delta-G solvation = -29382.549103 eV Core-core repulsion = 25281.496895 eV Total energy + Delta-G solvation = -4101.052208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21473 -39.82225 -38.73760 -37.57941 -34.34337 -34.01188 -33.38732 -32.84497 -31.21580 -30.15149 -29.30411 -27.46595 -27.36380 -25.87670 -24.27778 -22.69479 -21.35078 -21.11713 -20.46633 -19.90767 -18.94806 -17.93341 -17.44602 -17.24040 -16.85510 -15.84269 -15.76194 -15.39742 -14.88930 -14.75029 -14.57002 -14.37504 -14.10318 -13.87404 -13.73245 -13.61123 -13.54171 -13.21046 -12.92987 -12.81068 -12.57095 -12.31133 -12.23599 -12.17841 -11.86612 -11.56635 -11.46808 -11.17927 -10.97540 -10.94477 -10.68029 -10.61595 -10.44937 -10.21947 -10.11407 -9.50566 -9.37038 -9.03024 -8.64961 -8.52197 -8.11883 -7.96922 -6.41771 -3.83028 1.83601 2.31196 2.54536 2.87013 3.16583 3.19424 3.25616 3.29467 3.89285 4.07175 4.28546 4.40316 4.52665 4.57749 4.68266 4.77393 4.83902 4.93377 5.02179 5.04164 5.20180 5.23746 5.26847 5.45546 5.47100 5.49165 5.56081 5.67174 5.69407 5.71372 5.79386 5.86708 5.93733 5.93888 5.96879 6.13155 6.19694 6.24708 6.41235 6.60387 6.86914 7.09003 7.49280 7.54120 7.54502 7.70817 8.04958 8.18796 8.60099 9.16973 9.53629 10.04472 10.75767 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007402 B = 0.003340 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.847175 B = 8382.339925 C =11329.067187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.146 4.146 4 C 0.079 3.921 5 H 0.089 0.911 6 C 0.129 3.871 7 N -0.711 5.711 8 C 0.498 3.502 9 O -0.519 6.519 10 C 0.114 3.886 11 N -0.361 5.361 12 C 0.049 3.951 13 C -0.273 4.273 14 C 0.036 3.964 15 N -0.262 5.262 16 N -0.659 5.659 17 C 0.044 3.956 18 C 0.441 3.559 19 O -0.586 6.586 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.411 0.589 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.181 0.819 44 H 0.354 0.646 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 15.789 11.759 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.204 4.204 4 C -0.032 4.032 5 H 0.107 0.893 6 C 0.005 3.995 7 N -0.364 5.364 8 C 0.282 3.718 9 O -0.394 6.394 10 C -0.011 4.011 11 N -0.144 5.144 12 C -0.097 4.097 13 C -0.303 4.303 14 C -0.151 4.151 15 N -0.082 5.082 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.470 6.470 20 N -0.199 5.199 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.247 0.753 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.189 0.811 42 H 0.164 0.836 43 H 0.198 0.802 44 H 0.174 0.826 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.467 15.190 11.143 19.917 hybrid contribution -0.324 -0.255 -0.305 0.513 sum 6.142 14.934 10.838 19.448 Atomic orbital electron populations 1.21854 0.94642 1.02299 1.02001 1.21817 0.96574 0.97025 0.99742 1.21853 1.01182 0.95571 1.01803 1.21945 0.93410 0.90028 0.97798 0.89257 1.21443 0.92964 0.95383 0.89721 1.45710 1.06565 1.54521 1.29647 1.20447 0.82934 0.81367 0.87094 1.90779 1.54854 1.49681 1.44070 1.21485 0.76890 1.03283 0.99476 1.48107 1.05213 1.49716 1.11328 1.22509 0.90467 1.01707 0.94973 1.21469 0.97184 1.13914 0.97723 1.23934 0.94889 1.00264 0.96052 1.77584 1.03526 1.19067 1.08023 1.60226 1.19433 1.11858 1.37616 1.21763 1.01529 0.93990 0.91599 1.19776 0.85848 0.86591 0.85153 1.90509 1.46114 1.79313 1.31077 1.41867 1.49848 1.10980 1.17157 1.19631 1.32857 0.86585 1.03994 0.88001 1.25267 0.97164 1.00340 0.95103 1.69606 1.41016 1.36658 1.06837 0.85925 0.79250 0.81519 0.77566 1.19933 1.20950 1.19873 0.92446 0.92342 0.92249 0.90402 0.92356 0.92657 0.92642 0.91359 0.91145 0.75301 0.85865 0.86396 0.81074 0.83648 0.80174 0.82568 0.89602 0.93408 0.77507 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.50 37.16 0.32 -1.14 16 2 C -0.13 -1.28 1.93 -90.62 -0.18 -1.45 16 3 C -0.15 -1.22 8.93 37.16 0.33 -0.89 16 4 C 0.08 0.82 2.28 -67.71 -0.15 0.66 16 5 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 6 C 0.13 1.50 4.35 -4.04 -0.02 1.48 16 7 N -0.71 -8.17 5.39 -60.29 -0.32 -8.49 16 8 C 0.50 6.67 7.86 -10.99 -0.09 6.59 16 9 O -0.52 -9.28 15.72 5.55 0.09 -9.19 16 10 C 0.11 1.18 6.99 -5.19 -0.04 1.14 16 11 N -0.36 -4.64 3.39 -62.54 -0.21 -4.86 16 12 C 0.05 0.49 11.45 -17.23 -0.20 0.29 16 13 C -0.27 -2.86 10.80 -40.01 -0.43 -3.29 16 14 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 15 N -0.26 -4.16 11.66 30.62 0.36 -3.80 16 16 N -0.66 -9.00 5.25 -107.99 -0.57 -9.56 16 17 C 0.04 0.73 5.15 -4.97 -0.03 0.70 16 18 C 0.44 10.08 7.83 -10.98 -0.09 9.99 16 19 O -0.59 -15.19 15.84 5.55 0.09 -15.10 16 20 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.68 6.53 -51.93 -0.34 0.34 16 32 H 0.08 0.87 6.67 -51.93 -0.35 0.52 16 33 H 0.06 0.50 6.65 -51.93 -0.35 0.15 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 37 H 0.07 0.78 6.79 -51.93 -0.35 0.43 16 38 H 0.41 4.16 8.14 -40.82 -0.33 3.83 16 39 H 0.12 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 43 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.35 5.02 7.14 -39.29 -0.28 4.74 16 45 H 0.09 1.45 6.34 -51.93 -0.33 1.12 16 46 H 0.05 0.74 6.07 -51.93 -0.31 0.42 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -36.32 395.21 -7.03 -43.35 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -7.04 Total: 17.54 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.01 Total: 6.33 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.08 Total: -65.01 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.18 Total: -24.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.32 -7.03 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568443328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.043 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds