Wall clock time and date at job start Tue Mar 31 2020 19:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46895 * 2 1 4 4 N 1.33315 * 126.10885 * 270.04209 * 3 2 1 5 5 C 1.30851 * 109.68853 * 179.97438 * 4 3 2 6 6 N 1.34493 * 109.16289 * 359.97438 * 5 4 3 7 7 H 0.96999 * 126.47364 * 180.02562 * 6 5 4 8 8 C 1.36660 * 126.10570 * 90.00016 * 3 2 1 9 9 C 1.46761 * 126.84877 * 359.77023 * 8 3 2 10 10 O 1.21684 * 119.99995 * 0.02562 * 9 8 3 11 11 N 1.34773 * 120.00490 * 180.02562 * 9 8 3 12 12 C 1.46497 * 120.00325 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47023 * 34.60924 * 12 11 9 14 14 C 1.52995 * 109.47289 * 274.60820 * 12 11 9 15 15 C 1.53008 * 109.47104 * 154.60576 * 12 11 9 16 16 N 1.46896 * 109.46995 * 305.18720 * 15 12 11 17 17 C 1.46903 * 110.99673 * 163.93534 * 16 15 12 18 18 C 1.46902 * 110.99886 * 287.88867 * 16 15 12 19 19 C 1.50702 * 109.47094 * 170.00287 * 18 16 15 20 20 O 1.21294 * 119.99772 * 0.02562 * 19 18 16 21 21 N 1.34777 * 120.00231 * 179.97438 * 19 18 16 22 22 C 1.37094 * 119.99811 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00584 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99606 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99971 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00179 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46887 * 90.00314 * 26 24 22 28 28 H 1.48500 * 109.47336 * 209.99886 * 26 24 22 29 29 H 1.48495 * 109.47223 * 330.00231 * 26 24 22 30 30 H 1.09008 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47205 * 299.99794 * 1 2 3 32 32 H 1.08996 * 109.47653 * 60.00594 * 1 2 3 33 33 H 1.09003 * 109.46995 * 240.00020 * 2 1 3 34 34 H 1.08997 * 109.46912 * 119.99965 * 2 1 3 35 35 H 1.08001 * 125.41876 * 179.97438 * 5 4 3 36 36 H 0.97007 * 119.99765 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47459 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47172 * 300.00013 * 14 12 11 39 39 H 1.09000 * 109.47540 * 59.99989 * 14 12 11 40 40 H 1.09001 * 109.46570 * 65.18717 * 15 12 11 41 41 H 1.08999 * 109.46993 * 185.18737 * 15 12 11 42 42 H 1.09006 * 109.46998 * 54.89840 * 17 16 15 43 43 H 1.09003 * 109.46784 * 174.89298 * 17 16 15 44 44 H 1.08992 * 109.47555 * 294.89447 * 17 16 15 45 45 H 1.09006 * 109.47058 * 289.99746 * 18 16 15 46 46 H 1.08995 * 109.47199 * 50.00346 * 18 16 15 47 47 H 0.96995 * 119.99820 * 0.02562 * 21 19 18 48 48 H 0.96994 * 119.99838 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2934 2.1618 -1.0771 5 6 2.7115 3.3453 -0.7072 6 7 2.7329 3.4059 0.6362 7 1 3.0013 4.1667 1.1749 8 6 2.3007 2.1801 1.1041 9 6 2.1529 1.7760 2.5073 10 8 1.7538 0.6593 2.7800 11 7 2.4590 2.6418 3.4937 12 6 2.3120 2.2382 4.8943 13 1 2.5545 1.1803 4.9950 14 6 0.8693 2.4759 5.3448 15 6 3.2610 3.0641 5.7653 16 7 4.6323 2.9333 5.2553 17 6 5.5007 3.9830 5.8050 18 6 5.1750 1.5983 5.5404 19 6 6.4734 1.4147 4.7978 20 8 6.9046 2.3084 4.1001 21 7 7.1561 0.2580 4.9097 22 6 8.3370 0.0910 4.2337 23 1 8.7206 0.8863 3.6118 24 6 9.0405 -1.1018 4.3487 25 7 10.1728 -1.2618 3.7011 26 14 8.3776 -2.4772 5.4249 27 1 7.5010 -3.3607 4.6147 28 1 9.5097 -3.2686 5.9702 29 1 7.5950 -1.8959 6.5450 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.9943 4.1460 -1.3745 36 1 2.7768 3.5322 3.2763 37 1 0.7598 2.1753 6.3868 38 1 0.6269 3.5339 5.2442 39 1 0.1933 1.8876 4.7244 40 1 2.9610 4.1116 5.7370 41 1 3.2192 2.7018 6.7925 42 1 5.4520 3.9616 6.8938 43 1 6.5278 3.8099 5.4838 44 1 5.1667 4.9562 5.4455 45 1 5.3518 1.4991 6.6114 46 1 4.4617 0.8398 5.2180 47 1 6.8115 -0.4564 5.4679 48 1 10.6637 -2.0946 3.7811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569148553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:54 Heat of formation + Delta-G solvation = -7.901147 kcal Electronic energy + Delta-G solvation = -30183.938224 eV Core-core repulsion = 26082.123143 eV Total energy + Delta-G solvation = -4101.815081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27110 -39.66589 -38.70713 -37.05044 -35.01913 -34.13633 -33.80109 -32.28859 -31.68254 -31.02019 -28.90337 -28.30649 -27.09905 -24.67428 -24.33095 -23.02598 -22.45922 -21.56751 -20.56644 -19.65831 -19.34354 -18.78252 -18.28306 -16.48427 -16.30460 -16.08418 -15.61784 -15.34550 -15.06297 -14.83074 -14.56411 -14.30463 -14.19969 -13.95250 -13.85601 -13.61759 -13.39422 -13.21763 -13.00262 -12.60312 -12.46237 -12.31884 -12.26934 -12.04894 -11.86239 -11.64148 -11.43803 -11.36028 -11.14627 -10.94164 -10.78350 -10.59041 -10.42648 -10.07043 -9.98242 -9.79813 -9.54275 -9.15499 -8.61518 -8.50629 -8.19265 -8.07596 -6.31607 -3.82960 1.28490 2.78073 2.84679 3.02811 3.08548 3.09116 3.16127 3.37341 3.71283 3.84151 4.10682 4.36798 4.50229 4.75837 4.80904 4.92625 4.99321 5.09021 5.13593 5.20795 5.27633 5.38429 5.46424 5.49200 5.50224 5.53513 5.56972 5.63638 5.72135 5.75863 5.80084 5.85679 5.93393 5.99209 6.06319 6.26500 6.26798 6.34512 6.44157 6.56548 7.03832 7.11130 7.16300 7.44130 7.57433 7.87683 8.13205 8.18424 8.59109 8.94214 9.41751 9.81735 10.81433 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.003681 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.476951 B = 7605.206708 C = 8782.781601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 C 0.099 3.901 4 N -0.499 5.499 5 C 0.217 3.783 6 N -0.552 5.552 7 H 0.422 0.578 8 C -0.086 4.086 9 C 0.599 3.401 10 O -0.527 6.527 11 N -0.705 5.705 12 C 0.147 3.853 13 H 0.091 0.909 14 C -0.161 4.161 15 C 0.042 3.958 16 N -0.516 5.516 17 C 0.023 3.977 18 C 0.040 3.960 19 C 0.453 3.547 20 O -0.562 6.562 21 N -0.589 5.589 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.043 3.957 25 N -0.881 5.881 26 Si 0.878 3.122 27 H -0.269 1.269 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.214 0.786 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.015 0.985 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 10.174 1.504 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.035 4.035 4 N -0.219 5.219 5 C -0.067 4.067 6 N -0.157 5.157 7 H 0.261 0.739 8 C -0.201 4.201 9 C 0.385 3.615 10 O -0.403 6.403 11 N -0.355 5.355 12 C 0.042 3.958 13 H 0.109 0.891 14 C -0.220 4.220 15 C -0.087 4.087 16 N -0.240 5.240 17 C -0.125 4.125 18 C -0.092 4.092 19 C 0.239 3.761 20 O -0.444 6.444 21 N -0.228 5.228 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.160 4.160 25 N -0.520 5.520 26 Si 0.705 3.295 27 H -0.194 1.194 28 H -0.201 1.201 29 H -0.196 1.196 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.230 0.770 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.185 9.612 -0.100 22.357 hybrid contribution 0.285 -0.004 2.636 2.652 sum -19.900 9.608 2.536 22.243 Atomic orbital electron populations 1.21595 0.94591 1.01590 1.01491 1.20054 0.95951 0.88908 1.03905 1.21010 0.98984 0.96875 0.86655 1.70108 1.18650 1.02587 1.30529 1.25098 1.01519 0.97971 0.82101 1.43308 1.50208 1.13360 1.08793 0.73890 1.20922 1.15715 0.88352 0.95145 1.16767 0.77390 0.84711 0.82613 1.90804 1.46956 1.19715 1.82852 1.45614 1.67408 1.16807 1.05658 1.20987 0.94193 1.00515 0.80135 0.89140 1.22151 0.96148 1.01954 1.01739 1.22506 0.89251 1.00484 0.96422 1.61552 1.00786 1.02531 1.59118 1.22533 1.00319 0.93871 0.95777 1.21956 0.97135 0.91840 0.98233 1.19573 0.86241 0.83868 0.86410 1.90511 1.69877 1.41506 1.42511 1.42210 1.22192 1.14321 1.44118 1.19400 0.96151 1.02747 1.25039 0.86336 1.25030 0.95825 0.97560 0.97610 1.69621 1.14342 1.26556 1.41530 0.86693 0.79337 0.82823 0.80689 1.19447 1.20142 1.19566 0.92316 0.92777 0.93052 0.90647 0.88699 0.76957 0.77012 0.91526 0.92517 0.91669 0.90215 0.93159 0.96617 0.88578 0.92083 0.93300 0.89318 0.79743 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.89 37.16 0.37 -1.21 16 2 C -0.05 -0.69 5.93 -27.88 -0.17 -0.85 16 3 C 0.10 1.45 6.40 -82.52 -0.53 0.93 16 4 N -0.50 -6.96 11.20 -10.65 -0.12 -7.08 16 5 C 0.22 2.23 13.01 -90.58 -1.18 1.05 16 6 N -0.55 -5.54 6.07 -10.79 -0.07 -5.61 16 7 H 0.42 2.87 8.32 -40.82 -0.34 2.53 16 8 C -0.09 -1.16 7.08 -82.14 -0.58 -1.75 16 9 C 0.60 8.50 7.76 -12.82 -0.10 8.40 16 10 O -0.53 -8.77 14.48 5.20 0.08 -8.70 16 11 N -0.70 -8.04 4.79 -55.09 -0.26 -8.31 16 12 C 0.15 1.57 2.52 -67.93 -0.17 1.40 16 13 H 0.09 1.18 6.22 -51.93 -0.32 0.85 16 14 C -0.16 -1.37 9.49 37.16 0.35 -1.02 16 15 C 0.04 0.42 4.53 -3.82 -0.02 0.41 16 16 N -0.52 -7.25 4.17 -244.36 -1.02 -8.27 16 17 C 0.02 0.31 9.19 60.07 0.55 0.87 16 18 C 0.04 0.65 5.30 -4.97 -0.03 0.63 16 19 C 0.45 10.18 7.42 -10.98 -0.08 10.10 16 20 O -0.56 -14.51 13.96 5.54 0.08 -14.43 16 21 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 22 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.19 5.50 -17.46 -0.10 1.09 16 25 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 26 Si 0.88 19.72 27.74 -169.99 -4.71 15.00 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.44 6.49 -51.93 -0.34 1.10 16 35 H 0.21 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.40 3.82 7.85 -40.82 -0.32 3.50 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.65 7.99 -51.93 -0.42 0.24 16 41 H 0.05 0.46 8.05 -51.93 -0.42 0.04 16 42 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 43 H 0.10 1.72 5.79 -51.93 -0.30 1.42 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 46 H 0.09 1.40 6.50 -51.93 -0.34 1.06 16 47 H 0.37 7.94 5.76 -40.82 -0.24 7.70 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -36.18 394.47 -8.42 -44.61 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -7.23 Total: 15.00 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -1.82 Total: 11.22 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.75 Total: -68.64 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.15 Total: -23.13 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.18 -8.42 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569148553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.705 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds