Wall clock time and date at job start Tue Mar 31 2020 19:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46895 * 2 1 4 4 N 1.33315 * 126.10885 * 270.04209 * 3 2 1 5 5 C 1.30851 * 109.68853 * 179.97438 * 4 3 2 6 6 N 1.34493 * 109.16289 * 359.97438 * 5 4 3 7 7 H 0.96999 * 126.47364 * 180.02562 * 6 5 4 8 8 C 1.36660 * 126.10570 * 90.00016 * 3 2 1 9 9 C 1.46761 * 126.84877 * 359.77023 * 8 3 2 10 10 O 1.21684 * 119.99995 * 0.02562 * 9 8 3 11 11 N 1.34773 * 120.00490 * 180.02562 * 9 8 3 12 12 C 1.46497 * 120.00325 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47023 * 34.60924 * 12 11 9 14 14 C 1.52995 * 109.47289 * 274.60820 * 12 11 9 15 15 C 1.53008 * 109.47104 * 154.60576 * 12 11 9 16 16 N 1.46896 * 109.46995 * 305.18720 * 15 12 11 17 17 C 1.46903 * 110.99673 * 163.93534 * 16 15 12 18 18 C 1.46902 * 110.99886 * 287.88867 * 16 15 12 19 19 C 1.50702 * 109.47094 * 170.00287 * 18 16 15 20 20 O 1.21294 * 119.99772 * 0.02562 * 19 18 16 21 21 N 1.34777 * 120.00231 * 179.97438 * 19 18 16 22 22 C 1.37094 * 119.99811 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00584 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99606 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99971 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00179 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46887 * 90.00314 * 26 24 22 28 28 H 1.48500 * 109.47336 * 209.99886 * 26 24 22 29 29 H 1.48495 * 109.47223 * 330.00231 * 26 24 22 30 30 H 1.09008 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47205 * 299.99794 * 1 2 3 32 32 H 1.08996 * 109.47653 * 60.00594 * 1 2 3 33 33 H 1.09003 * 109.46995 * 240.00020 * 2 1 3 34 34 H 1.08997 * 109.46912 * 119.99965 * 2 1 3 35 35 H 1.08001 * 125.41876 * 179.97438 * 5 4 3 36 36 H 0.97007 * 119.99765 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47459 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47172 * 300.00013 * 14 12 11 39 39 H 1.09000 * 109.47540 * 59.99989 * 14 12 11 40 40 H 1.09001 * 109.46570 * 65.18717 * 15 12 11 41 41 H 1.08999 * 109.46993 * 185.18737 * 15 12 11 42 42 H 1.09006 * 109.46998 * 54.89840 * 17 16 15 43 43 H 1.09003 * 109.46784 * 174.89298 * 17 16 15 44 44 H 1.08992 * 109.47555 * 294.89447 * 17 16 15 45 45 H 1.09006 * 109.47058 * 289.99746 * 18 16 15 46 46 H 1.08995 * 109.47199 * 50.00346 * 18 16 15 47 47 H 0.96995 * 119.99820 * 0.02562 * 21 19 18 48 48 H 0.96994 * 119.99838 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2934 2.1618 -1.0771 5 6 2.7115 3.3453 -0.7072 6 7 2.7329 3.4059 0.6362 7 1 3.0013 4.1667 1.1749 8 6 2.3007 2.1801 1.1041 9 6 2.1529 1.7760 2.5073 10 8 1.7538 0.6593 2.7800 11 7 2.4590 2.6418 3.4937 12 6 2.3120 2.2382 4.8943 13 1 2.5545 1.1803 4.9950 14 6 0.8693 2.4759 5.3448 15 6 3.2610 3.0641 5.7653 16 7 4.6323 2.9333 5.2553 17 6 5.5007 3.9830 5.8050 18 6 5.1750 1.5983 5.5404 19 6 6.4734 1.4147 4.7978 20 8 6.9046 2.3084 4.1001 21 7 7.1561 0.2580 4.9097 22 6 8.3370 0.0910 4.2337 23 1 8.7206 0.8863 3.6118 24 6 9.0405 -1.1018 4.3487 25 7 10.1728 -1.2618 3.7011 26 14 8.3776 -2.4772 5.4249 27 1 7.5010 -3.3607 4.6147 28 1 9.5097 -3.2686 5.9702 29 1 7.5950 -1.8959 6.5450 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.9943 4.1460 -1.3745 36 1 2.7768 3.5322 3.2763 37 1 0.7598 2.1753 6.3868 38 1 0.6269 3.5339 5.2442 39 1 0.1933 1.8876 4.7244 40 1 2.9610 4.1116 5.7370 41 1 3.2192 2.7018 6.7925 42 1 5.4520 3.9616 6.8938 43 1 6.5278 3.8099 5.4838 44 1 5.1667 4.9562 5.4455 45 1 5.3518 1.4991 6.6114 46 1 4.4617 0.8398 5.2180 47 1 6.8115 -0.4564 5.4679 48 1 10.6637 -2.0946 3.7811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569148553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:53 Heat of formation + Delta-G solvation = -36.854545 kcal Electronic energy + Delta-G solvation = -30185.193738 eV Core-core repulsion = 26082.123143 eV Total energy + Delta-G solvation = -4103.070594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.19980 -40.80851 -40.23821 -38.29977 -36.25170 -35.73192 -35.02339 -33.76950 -33.25679 -31.93250 -29.87844 -29.71773 -27.98163 -26.50594 -25.34208 -24.01479 -23.50134 -22.57148 -21.62437 -21.16728 -20.64194 -20.15754 -19.69992 -17.93843 -17.35890 -17.12948 -16.82931 -16.73666 -16.49902 -15.92357 -15.66962 -15.54948 -15.46468 -15.06029 -14.99471 -14.86684 -14.81123 -14.37656 -14.33369 -14.14209 -13.58942 -13.42570 -13.30438 -13.16718 -12.93614 -12.85256 -12.69838 -12.45654 -12.43452 -12.40311 -12.00988 -11.97145 -11.71319 -11.48545 -11.44366 -11.01357 -10.84497 -10.37508 -10.24994 -10.12307 -9.47101 -9.23419 -8.43857 -6.03815 0.30759 1.25934 1.32500 1.39844 1.86468 1.93666 1.95979 2.19531 2.20407 2.34377 2.63103 3.12243 3.19595 3.52161 3.75957 3.85582 4.02571 4.09726 4.16954 4.21241 4.30434 4.31321 4.46403 4.49827 4.55031 4.57192 4.64551 4.69151 4.70967 4.76366 4.78751 4.83454 5.06399 5.07725 5.20618 5.24190 5.29099 5.31745 5.49319 5.52666 5.55778 5.86749 5.98204 6.17688 6.35611 6.51599 6.57295 6.86275 6.94697 7.18710 7.37808 7.94301 8.73749 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.003681 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.476951 B = 7605.206708 C = 8782.781601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.051 4.051 3 C 0.075 3.925 4 N -0.535 5.535 5 C 0.233 3.767 6 N -0.540 5.540 7 H 0.438 0.562 8 C -0.105 4.105 9 C 0.592 3.408 10 O -0.560 6.560 11 N -0.694 5.694 12 C 0.144 3.856 13 H 0.066 0.934 14 C -0.151 4.151 15 C 0.049 3.951 16 N -0.533 5.533 17 C 0.028 3.972 18 C 0.053 3.947 19 C 0.453 3.547 20 O -0.600 6.600 21 N -0.596 5.596 22 C -0.325 4.325 23 H 0.057 0.943 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.958 3.042 27 H -0.262 1.262 28 H -0.272 1.272 29 H -0.232 1.232 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.406 0.594 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.386 0.614 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.797 11.106 3.878 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 C -0.059 4.059 4 N -0.255 5.255 5 C -0.052 4.052 6 N -0.145 5.145 7 H 0.280 0.720 8 C -0.222 4.222 9 C 0.379 3.621 10 O -0.439 6.439 11 N -0.344 5.344 12 C 0.039 3.961 13 H 0.084 0.916 14 C -0.210 4.210 15 C -0.078 4.078 16 N -0.257 5.257 17 C -0.119 4.119 18 C -0.078 4.078 19 C 0.240 3.760 20 O -0.484 6.484 21 N -0.237 5.237 22 C -0.454 4.454 23 H 0.075 0.925 24 C -0.211 4.211 25 N -0.574 5.574 26 Si 0.779 3.221 27 H -0.187 1.187 28 H -0.196 1.196 29 H -0.155 1.155 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.276 0.724 36 H 0.241 0.759 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.221 0.779 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.712 10.615 2.318 25.177 hybrid contribution 1.096 -0.096 1.789 2.100 sum -21.616 10.519 4.107 24.388 Atomic orbital electron populations 1.21501 0.93124 1.02398 1.01124 1.20021 0.97271 0.88932 1.02720 1.21222 0.99776 0.97404 0.87532 1.70083 1.20435 1.04154 1.30871 1.26025 0.98822 0.97803 0.82528 1.43244 1.49466 1.12816 1.08996 0.72026 1.20898 1.16743 0.89668 0.94870 1.16931 0.77268 0.84628 0.83279 1.90776 1.48660 1.21111 1.83390 1.45587 1.66343 1.16738 1.05730 1.21106 0.95936 0.99386 0.79683 0.91570 1.22057 0.93825 1.02819 1.02277 1.22583 0.86111 1.02200 0.96930 1.61477 1.02596 1.01182 1.60449 1.22409 0.97701 0.94794 0.97045 1.21815 0.93473 0.93877 0.98673 1.20844 0.87495 0.82407 0.85211 1.90498 1.71265 1.42687 1.43946 1.42087 1.21292 1.15687 1.44665 1.18977 0.98503 1.01985 1.25959 0.92478 1.26037 0.95676 1.00382 0.99025 1.69794 1.16216 1.27849 1.43562 0.85453 0.79150 0.78208 0.79312 1.18693 1.19637 1.15544 0.90927 0.93692 0.92642 0.90779 0.90746 0.72404 0.75910 0.89675 0.90663 0.93689 0.87320 0.90953 0.94473 0.93365 0.89717 0.90364 0.88233 0.77872 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.89 71.98 0.71 -2.23 16 2 C -0.05 -1.47 5.93 29.85 0.18 -1.29 16 3 C 0.08 2.25 6.40 41.96 0.27 2.51 16 4 N -0.54 -14.76 11.20 -187.60 -2.10 -16.86 16 5 C 0.23 4.38 13.01 180.33 2.35 6.72 16 6 N -0.54 -10.12 6.07 -188.05 -1.14 -11.26 16 7 H 0.44 5.08 8.32 -92.71 -0.77 4.31 16 8 C -0.11 -2.86 7.08 40.01 0.28 -2.58 16 9 C 0.59 16.78 7.76 86.47 0.67 17.45 16 10 O -0.56 -19.12 14.48 -4.30 -0.06 -19.18 16 11 N -0.69 -14.75 4.79 -446.43 -2.14 -16.89 16 12 C 0.14 2.70 2.52 44.99 0.11 2.81 16 13 H 0.07 1.61 6.22 -2.39 -0.01 1.59 16 14 C -0.15 -2.11 9.49 71.98 0.68 -1.43 16 15 C 0.05 0.78 4.53 86.31 0.39 1.17 16 16 N -0.53 -13.51 4.17 -927.02 -3.87 -17.37 16 17 C 0.03 0.71 9.19 127.69 1.17 1.88 16 18 C 0.05 1.62 5.30 85.56 0.45 2.07 16 19 C 0.45 20.42 7.42 87.66 0.65 21.07 16 20 O -0.60 -32.12 13.96 -3.07 -0.04 -32.17 16 21 N -0.60 -28.80 5.09 -306.98 -1.56 -30.37 16 22 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 23 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.93 -57.15 13.96 21.66 0.30 -56.84 16 26 Si 0.96 40.19 27.74 68.60 1.90 42.09 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.41 6.49 -2.39 -0.02 2.40 16 35 H 0.26 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.41 6.91 7.85 -92.70 -0.73 6.18 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.11 1.17 7.99 -2.39 -0.02 1.15 16 41 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 42 H 0.04 0.77 8.13 -2.38 -0.02 0.75 16 43 H 0.05 1.71 5.79 -2.39 -0.01 1.69 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.98 8.12 -2.38 -0.02 1.96 16 46 H 0.10 2.90 6.50 -2.39 -0.02 2.88 16 47 H 0.39 15.89 5.76 -92.71 -0.53 15.36 16 48 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -86.91 394.47 -0.55 -87.46 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -1.08 Total: 41.96 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 9.24 Total: 29.44 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -10.51 Total: -149.59 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.11 Total: -51.35 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.90 Total: 42.09 kcal Total: -86.91 -0.55 -87.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569148553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.602 kcal (2) G-P(sol) polarization free energy of solvation -86.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds