Wall clock time and date at job start Tue Mar 31 2020 19:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47356 * 2 1 4 4 N 1.33321 * 126.10758 * 270.00446 * 3 2 1 5 5 C 1.30857 * 109.68676 * 179.97438 * 4 3 2 6 6 N 1.34498 * 109.16038 * 359.76310 * 5 4 3 7 7 H 0.97007 * 126.47148 * 180.25336 * 6 5 4 8 8 C 1.36662 * 126.11040 * 90.00349 * 3 2 1 9 9 C 1.46766 * 126.83985 * 359.96560 * 8 3 2 10 10 O 1.21685 * 120.00274 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99951 * 180.02562 * 9 8 3 12 12 C 1.46506 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46566 * 324.99334 * 12 11 9 14 14 C 1.52997 * 109.47289 * 84.99600 * 12 11 9 15 15 C 1.52992 * 109.46999 * 205.00067 * 12 11 9 16 16 H 1.09001 * 109.47066 * 299.99819 * 15 12 11 17 17 C 1.52997 * 109.47482 * 59.99650 * 15 12 11 18 18 N 1.46896 * 109.47500 * 179.97438 * 15 12 11 19 19 C 1.46901 * 111.00761 * 154.99565 * 18 15 12 20 20 C 1.50697 * 109.47587 * 180.02562 * 19 18 15 21 21 O 1.21299 * 119.99892 * 0.02562 * 20 19 18 22 22 N 1.34770 * 120.00115 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99731 * 180.02562 * 22 20 19 24 24 H 1.07994 * 120.00065 * 359.97438 * 23 22 20 25 25 C 1.38947 * 119.99491 * 179.97438 * 23 22 20 26 26 N 1.31417 * 120.00462 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00033 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46717 * 59.99711 * 27 25 23 29 29 H 1.48496 * 109.47343 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46851 * 300.00293 * 27 25 23 31 31 H 1.08997 * 109.47464 * 59.99389 * 1 2 3 32 32 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46730 * 299.99748 * 1 2 3 34 34 H 1.09000 * 109.46730 * 240.00252 * 2 1 3 35 35 H 1.08997 * 109.47464 * 120.00611 * 2 1 3 36 36 H 1.08003 * 125.42174 * 180.02562 * 5 4 3 37 37 H 0.96992 * 119.99904 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 40 40 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 41 41 H 1.09004 * 109.47261 * 180.02562 * 17 15 12 42 42 H 1.09002 * 109.47153 * 300.00216 * 17 15 12 43 43 H 1.09001 * 109.47289 * 60.00300 * 17 15 12 44 44 H 1.00903 * 111.00131 * 278.95285 * 18 15 12 45 45 H 1.09001 * 109.46898 * 300.00495 * 19 18 15 46 46 H 1.08999 * 109.46516 * 59.99672 * 19 18 15 47 47 H 0.96995 * 120.00190 * 359.97438 * 22 20 19 48 48 H 0.97000 * 120.00277 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2942 2.1615 -1.0771 5 6 2.7121 3.3451 -0.7072 6 7 2.7284 3.4075 0.6362 7 1 2.9926 4.1698 1.1749 8 6 2.3009 2.1801 1.1041 9 6 2.1569 1.7746 2.5072 10 8 1.7614 0.6566 2.7800 11 7 2.4627 2.6405 3.4937 12 6 2.3194 2.2356 4.8944 13 1 1.4600 1.5727 4.9948 14 6 3.5844 1.5025 5.3453 15 6 2.1111 3.4761 5.7651 16 1 2.9705 4.1391 5.6647 17 6 0.8461 4.2092 5.3142 18 7 1.9668 3.0702 7.1695 19 6 2.3521 4.1608 8.0752 20 6 2.1919 3.7079 9.5035 21 8 1.7962 2.5867 9.7436 22 7 2.4883 4.5487 10.5143 23 6 2.3431 4.1364 11.8138 24 1 1.9908 3.1382 12.0274 25 6 2.6492 5.0031 12.8558 26 7 3.0774 6.2180 12.5958 27 14 2.4507 4.4418 14.6264 28 1 3.3202 3.2634 14.8725 29 1 2.8407 5.5441 15.5419 30 1 1.0338 4.0714 14.8723 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.9947 4.1459 -1.3745 37 1 2.7783 3.5315 3.2763 38 1 3.4780 1.2016 6.3875 39 1 4.4438 2.1654 5.2448 40 1 3.7328 0.6186 4.7249 41 1 0.6979 5.0934 5.9343 42 1 0.9527 4.5105 4.2721 43 1 -0.0133 3.5464 5.4147 44 1 1.0270 2.7565 7.3605 45 1 3.3922 4.4324 7.8949 46 1 1.7141 5.0258 7.8941 47 1 2.8051 5.4451 10.3224 48 1 3.2908 6.8232 13.3233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570647415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:46 Heat of formation + Delta-G solvation = -25.773106 kcal Electronic energy + Delta-G solvation = -28751.617894 eV Core-core repulsion = 24649.027826 eV Total energy + Delta-G solvation = -4102.590067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62810 -39.86749 -38.47442 -37.25617 -34.99053 -34.23145 -33.81666 -32.49795 -31.32240 -30.86181 -29.75307 -29.08923 -26.38332 -24.74604 -24.23407 -23.48220 -22.85873 -21.54149 -20.83958 -19.89715 -19.33003 -19.02180 -17.94707 -16.64514 -16.52497 -15.96420 -15.87982 -15.34541 -15.14580 -14.75288 -14.59862 -14.53887 -14.17053 -14.01434 -13.90674 -13.78196 -13.68404 -13.53265 -13.11211 -12.58499 -12.45674 -12.25965 -12.21200 -11.68176 -11.66242 -11.60926 -11.51042 -11.37591 -11.18249 -11.04541 -10.79035 -10.72975 -10.46839 -10.42307 -10.24736 -10.07647 -9.53439 -9.43182 -8.86277 -8.52288 -8.13221 -7.99879 -6.45237 -3.86160 0.93354 2.43964 2.47938 2.78240 3.03123 3.17892 3.23800 3.28351 3.86268 4.02890 4.07514 4.29453 4.38866 4.53302 4.66407 4.79163 4.83967 5.02750 5.11614 5.22077 5.22648 5.28672 5.31787 5.36135 5.41581 5.44820 5.55390 5.60658 5.74782 5.78495 5.84627 5.91479 5.95723 5.99687 6.02459 6.05769 6.18421 6.24942 6.28773 6.49278 6.75197 7.07012 7.14847 7.51860 7.53098 7.54796 7.88640 8.02319 8.57131 9.14273 9.50061 10.01351 10.72310 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030382 B = 0.001807 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.362139 B =15495.000809 C =15943.229569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.102 3.898 4 N -0.498 5.498 5 C 0.218 3.782 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.091 4.091 9 C 0.595 3.405 10 O -0.516 6.516 11 N -0.723 5.723 12 C 0.155 3.845 13 H 0.093 0.907 14 C -0.153 4.153 15 C 0.078 3.922 16 H 0.080 0.920 17 C -0.184 4.184 18 N -0.657 5.657 19 C 0.053 3.947 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.215 0.785 37 H 0.390 0.610 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.354 0.646 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -0.019 -26.137 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.033 4.033 4 N -0.217 5.217 5 C -0.066 4.066 6 N -0.162 5.162 7 H 0.260 0.740 8 C -0.207 4.207 9 C 0.381 3.619 10 O -0.391 6.391 11 N -0.374 5.374 12 C 0.051 3.949 13 H 0.111 0.889 14 C -0.211 4.211 15 C -0.034 4.034 16 H 0.098 0.902 17 C -0.243 4.243 18 N -0.289 5.289 19 C -0.080 4.080 20 C 0.225 3.775 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.223 0.777 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.174 0.826 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.117 -2.039 -26.348 26.427 hybrid contribution -0.086 2.535 1.555 2.975 sum 0.032 0.496 -24.793 24.798 Atomic orbital electron populations 1.21611 0.94293 1.01909 1.01725 1.20078 0.96291 0.88671 1.03800 1.21088 0.98524 0.97071 0.86578 1.70147 1.18380 1.02714 1.30506 1.25163 1.01413 0.97959 0.82031 1.43346 1.50826 1.13136 1.08851 0.73975 1.21007 1.16264 0.88176 0.95231 1.16774 0.77672 0.85022 0.82413 1.90850 1.46023 1.19518 1.82678 1.45980 1.68313 1.16328 1.06804 1.20932 1.00326 0.96038 0.77622 0.88902 1.22045 0.95951 0.99671 1.03430 1.21747 0.97658 0.94537 0.89444 0.90177 1.22543 0.99052 1.01308 1.01389 1.59989 1.33256 1.35738 0.99925 1.21689 1.01280 0.92357 0.92657 1.19777 0.84987 0.86772 0.85972 1.90539 1.51102 1.20433 1.84502 1.41851 1.58160 1.14524 1.05431 1.19658 1.41825 1.00512 0.80938 0.87934 1.25266 0.97000 0.95175 1.00489 1.69601 1.45010 1.06076 1.33670 0.85911 0.78961 0.78031 0.81290 1.19851 1.20983 1.19899 0.92958 0.92073 0.92588 0.90636 0.88671 0.76835 0.77743 0.89295 0.93277 0.92919 0.92134 0.92591 0.92002 0.82600 0.89622 0.93804 0.77505 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.05 -0.51 5.93 -27.89 -0.17 -0.68 16 3 C 0.10 1.09 6.40 -82.52 -0.53 0.56 16 4 N -0.50 -4.97 11.20 -10.64 -0.12 -5.09 16 5 C 0.22 1.32 13.01 -90.57 -1.18 0.14 16 6 N -0.56 -3.07 6.07 -10.79 -0.07 -3.14 16 7 H 0.42 0.83 8.32 -40.82 -0.34 0.49 16 8 C -0.09 -0.86 7.07 -82.15 -0.58 -1.44 16 9 C 0.60 6.43 7.76 -12.81 -0.10 6.33 16 10 O -0.52 -7.25 14.48 5.20 0.08 -7.18 16 11 N -0.72 -6.17 4.38 -55.09 -0.24 -6.41 16 12 C 0.15 1.67 2.34 -67.93 -0.16 1.51 16 13 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 14 C -0.15 -1.83 9.33 37.16 0.35 -1.48 16 15 C 0.08 0.81 2.22 -67.72 -0.15 0.66 16 16 H 0.08 0.76 7.80 -51.93 -0.41 0.35 16 17 C -0.18 -1.70 9.00 37.16 0.33 -1.37 16 18 N -0.66 -9.53 5.11 -108.00 -0.55 -10.08 16 19 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 20 C 0.44 9.99 7.82 -10.99 -0.09 9.90 16 21 O -0.58 -15.38 15.78 5.54 0.09 -15.30 16 22 N -0.56 -13.89 5.29 -10.97 -0.06 -13.95 16 23 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 24 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 27 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.07 6.48 -51.93 -0.34 0.74 16 36 H 0.22 0.33 8.06 -52.48 -0.42 -0.10 16 37 H 0.39 2.16 7.63 -40.82 -0.31 1.85 16 38 H 0.09 1.25 7.60 -51.93 -0.39 0.86 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 42 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 43 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 44 H 0.35 5.50 8.17 -39.29 -0.32 5.18 16 45 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 46 H 0.04 0.64 7.43 -51.93 -0.39 0.25 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -34.47 400.53 -8.60 -43.07 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.29 Total: 13.49 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.17 Total: 6.15 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.31 Total: -62.08 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.16 Total: -22.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.47 -8.60 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570647415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.292 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds