Wall clock time and date at job start Tue Mar 31 2020 19:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47356 * 2 1 4 4 N 1.33321 * 126.10758 * 270.00446 * 3 2 1 5 5 C 1.30857 * 109.68676 * 179.97438 * 4 3 2 6 6 N 1.34498 * 109.16038 * 359.76310 * 5 4 3 7 7 H 0.97007 * 126.47148 * 180.25336 * 6 5 4 8 8 C 1.36662 * 126.11040 * 90.00349 * 3 2 1 9 9 C 1.46766 * 126.83985 * 359.96560 * 8 3 2 10 10 O 1.21685 * 120.00274 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99951 * 180.02562 * 9 8 3 12 12 C 1.46506 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46566 * 324.99334 * 12 11 9 14 14 C 1.52997 * 109.47289 * 84.99600 * 12 11 9 15 15 C 1.52992 * 109.46999 * 205.00067 * 12 11 9 16 16 H 1.09001 * 109.47066 * 299.99819 * 15 12 11 17 17 C 1.52997 * 109.47482 * 59.99650 * 15 12 11 18 18 N 1.46896 * 109.47500 * 179.97438 * 15 12 11 19 19 C 1.46901 * 111.00761 * 154.99565 * 18 15 12 20 20 C 1.50697 * 109.47587 * 180.02562 * 19 18 15 21 21 O 1.21299 * 119.99892 * 0.02562 * 20 19 18 22 22 N 1.34770 * 120.00115 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99731 * 180.02562 * 22 20 19 24 24 H 1.07994 * 120.00065 * 359.97438 * 23 22 20 25 25 C 1.38947 * 119.99491 * 179.97438 * 23 22 20 26 26 N 1.31417 * 120.00462 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00033 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46717 * 59.99711 * 27 25 23 29 29 H 1.48496 * 109.47343 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46851 * 300.00293 * 27 25 23 31 31 H 1.08997 * 109.47464 * 59.99389 * 1 2 3 32 32 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46730 * 299.99748 * 1 2 3 34 34 H 1.09000 * 109.46730 * 240.00252 * 2 1 3 35 35 H 1.08997 * 109.47464 * 120.00611 * 2 1 3 36 36 H 1.08003 * 125.42174 * 180.02562 * 5 4 3 37 37 H 0.96992 * 119.99904 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 40 40 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 41 41 H 1.09004 * 109.47261 * 180.02562 * 17 15 12 42 42 H 1.09002 * 109.47153 * 300.00216 * 17 15 12 43 43 H 1.09001 * 109.47289 * 60.00300 * 17 15 12 44 44 H 1.00903 * 111.00131 * 278.95285 * 18 15 12 45 45 H 1.09001 * 109.46898 * 300.00495 * 19 18 15 46 46 H 1.08999 * 109.46516 * 59.99672 * 19 18 15 47 47 H 0.96995 * 120.00190 * 359.97438 * 22 20 19 48 48 H 0.97000 * 120.00277 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2942 2.1615 -1.0771 5 6 2.7121 3.3451 -0.7072 6 7 2.7284 3.4075 0.6362 7 1 2.9926 4.1698 1.1749 8 6 2.3009 2.1801 1.1041 9 6 2.1569 1.7746 2.5072 10 8 1.7614 0.6566 2.7800 11 7 2.4627 2.6405 3.4937 12 6 2.3194 2.2356 4.8944 13 1 1.4600 1.5727 4.9948 14 6 3.5844 1.5025 5.3453 15 6 2.1111 3.4761 5.7651 16 1 2.9705 4.1391 5.6647 17 6 0.8461 4.2092 5.3142 18 7 1.9668 3.0702 7.1695 19 6 2.3521 4.1608 8.0752 20 6 2.1919 3.7079 9.5035 21 8 1.7962 2.5867 9.7436 22 7 2.4883 4.5487 10.5143 23 6 2.3431 4.1364 11.8138 24 1 1.9908 3.1382 12.0274 25 6 2.6492 5.0031 12.8558 26 7 3.0774 6.2180 12.5958 27 14 2.4507 4.4418 14.6264 28 1 3.3202 3.2634 14.8725 29 1 2.8407 5.5441 15.5419 30 1 1.0338 4.0714 14.8723 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.9947 4.1459 -1.3745 37 1 2.7783 3.5315 3.2763 38 1 3.4780 1.2016 6.3875 39 1 4.4438 2.1654 5.2448 40 1 3.7328 0.6186 4.7249 41 1 0.6979 5.0934 5.9343 42 1 0.9527 4.5105 4.2721 43 1 -0.0133 3.5464 5.4147 44 1 1.0270 2.7565 7.3605 45 1 3.3922 4.4324 7.8949 46 1 1.7141 5.0258 7.8941 47 1 2.8051 5.4451 10.3224 48 1 3.2908 6.8232 13.3233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570647415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:45 Heat of formation + Delta-G solvation = -52.068486 kcal Electronic energy + Delta-G solvation = -28752.758147 eV Core-core repulsion = 24649.027826 eV Total energy + Delta-G solvation = -4103.730320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.23168 -40.76170 -40.11644 -38.40074 -36.11211 -35.68125 -34.94121 -33.31180 -33.16777 -31.86299 -30.68905 -29.80842 -27.93769 -25.84831 -25.52704 -24.36275 -23.55370 -22.29689 -21.75319 -21.06640 -20.59774 -19.91605 -19.69494 -17.81819 -17.45893 -17.14288 -16.65492 -16.62334 -16.37970 -15.97159 -15.75545 -15.53466 -15.31585 -15.12920 -15.08169 -14.80464 -14.60000 -14.32885 -14.26050 -13.96985 -13.53076 -13.39147 -13.30977 -13.19589 -12.99493 -12.72906 -12.58172 -12.42886 -12.41493 -12.26434 -12.12868 -11.98767 -11.69962 -11.49728 -11.46866 -11.02327 -10.88297 -10.37967 -10.25688 -10.00606 -9.52633 -9.29381 -8.46364 -5.94621 0.26230 1.39714 1.41906 1.52252 1.82421 1.87313 2.07049 2.09477 2.25356 2.30281 2.99899 3.21259 3.51224 3.55793 3.60897 3.80930 4.00172 4.09239 4.19112 4.22451 4.31549 4.45454 4.47688 4.49617 4.53748 4.57190 4.62044 4.66787 4.75674 4.76593 4.83443 4.94238 5.04361 5.08184 5.19986 5.24022 5.28567 5.34782 5.41476 5.48433 5.53420 5.89730 6.10465 6.32687 6.36053 6.46189 6.61178 6.94580 7.11258 7.13662 7.57735 8.13547 8.70567 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030382 B = 0.001807 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.362139 B =15495.000809 C =15943.229569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.082 3.918 4 N -0.536 5.536 5 C 0.240 3.760 6 N -0.539 5.539 7 H 0.441 0.559 8 C -0.104 4.104 9 C 0.594 3.406 10 O -0.556 6.556 11 N -0.705 5.705 12 C 0.164 3.836 13 H 0.067 0.933 14 C -0.146 4.146 15 C 0.085 3.915 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.672 5.672 19 C 0.070 3.930 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.333 4.333 24 H 0.077 0.923 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.273 1.273 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.263 0.737 37 H 0.409 0.591 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.345 0.655 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 2.546 -27.622 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.053 4.053 4 N -0.256 5.256 5 C -0.044 4.044 6 N -0.145 5.145 7 H 0.283 0.717 8 C -0.221 4.221 9 C 0.382 3.618 10 O -0.434 6.434 11 N -0.357 5.357 12 C 0.059 3.941 13 H 0.085 0.915 14 C -0.204 4.204 15 C -0.025 4.025 16 H 0.122 0.878 17 C -0.237 4.237 18 N -0.304 5.304 19 C -0.062 4.062 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.199 1.199 29 H -0.195 1.195 30 H -0.198 1.198 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.278 0.722 37 H 0.245 0.755 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.164 0.836 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.965 0.607 -27.844 27.868 hybrid contribution -0.319 1.731 1.903 2.592 sum 0.646 2.338 -25.941 26.054 Atomic orbital electron populations 1.21538 0.93965 1.02322 1.00940 1.20022 0.96605 0.89226 1.03080 1.21192 0.99207 0.97367 0.87530 1.70131 1.20299 1.04413 1.30775 1.26082 0.98280 0.97594 0.82450 1.43234 1.49870 1.12431 1.08992 0.71701 1.20669 1.17622 0.89755 0.94027 1.16986 0.77012 0.84603 0.83241 1.90835 1.47878 1.21349 1.83362 1.45678 1.67687 1.16921 1.05401 1.20660 0.98721 0.95890 0.78853 0.91456 1.21945 0.97174 0.99723 1.01595 1.21750 0.99345 0.94543 0.86863 0.87823 1.22477 0.97599 1.00755 1.02892 1.59937 1.32863 1.35783 1.01853 1.21537 1.03225 0.93217 0.88264 1.20956 0.82632 0.85783 0.88242 1.90511 1.52420 1.22360 1.85770 1.41914 1.58929 1.15058 1.05154 1.19605 1.43721 1.00070 0.82920 0.90470 1.25996 0.96216 0.95177 1.03824 1.69654 1.44900 1.06540 1.34893 0.85026 0.78763 0.77887 0.76897 1.19868 1.19474 1.19795 0.92670 0.91127 0.94181 0.90207 0.90401 0.72191 0.75499 0.91728 0.91670 0.94145 0.91885 0.90180 0.93318 0.83584 0.87355 0.91195 0.76904 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.89 71.98 0.71 -1.82 16 2 C -0.05 -1.08 5.93 29.85 0.18 -0.90 16 3 C 0.08 1.71 6.40 41.96 0.27 1.97 16 4 N -0.54 -9.78 11.20 -187.59 -2.10 -11.88 16 5 C 0.24 2.07 13.01 180.33 2.35 4.42 16 6 N -0.54 -4.22 6.07 -188.04 -1.14 -5.37 16 7 H 0.44 -0.12 8.32 -92.70 -0.77 -0.89 16 8 C -0.10 -1.83 7.07 40.01 0.28 -1.55 16 9 C 0.59 12.55 7.76 86.47 0.67 13.22 16 10 O -0.56 -16.29 14.48 -4.30 -0.06 -16.36 16 11 N -0.70 -10.77 4.38 -446.42 -1.95 -12.73 16 12 C 0.16 3.40 2.34 44.99 0.11 3.51 16 13 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 14 C -0.15 -3.45 9.33 71.98 0.67 -2.78 16 15 C 0.09 1.60 2.22 44.91 0.10 1.70 16 16 H 0.10 1.52 7.80 -2.39 -0.02 1.50 16 17 C -0.18 -2.84 9.00 71.98 0.65 -2.19 16 18 N -0.67 -18.88 5.11 -495.61 -2.53 -21.41 16 19 C 0.07 2.13 5.97 85.56 0.51 2.64 16 20 C 0.44 19.91 7.82 87.66 0.69 20.59 16 21 O -0.62 -33.92 15.78 -3.09 -0.05 -33.97 16 22 N -0.57 -28.50 5.29 -306.99 -1.62 -30.12 16 23 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 24 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 25 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 26 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 27 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 30 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.89 6.48 -2.39 -0.02 1.88 16 36 H 0.26 -0.57 8.06 -2.91 -0.02 -0.59 16 37 H 0.41 3.12 7.63 -92.71 -0.71 2.41 16 38 H 0.06 1.86 7.60 -2.39 -0.02 1.84 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.01 7.45 -2.38 -0.02 0.99 16 42 H 0.08 0.89 7.45 -2.39 -0.02 0.87 16 43 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 44 H 0.35 10.78 8.17 -89.69 -0.73 10.05 16 45 H 0.11 2.88 8.06 -2.39 -0.02 2.86 16 46 H 0.07 1.82 7.43 -2.39 -0.02 1.80 16 47 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -78.60 400.53 -0.61 -79.21 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -1.92 Total: 35.62 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 8.46 Total: 20.76 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -9.07 Total: -129.84 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.11 Total: -50.32 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.60 -0.61 -79.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570647415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.143 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds