Wall clock time and date at job start Tue Mar 31 2020 19:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47249 * 2 1 4 4 N 1.33324 * 126.10348 * 90.02510 * 3 2 1 5 5 C 1.30864 * 109.68414 * 180.02562 * 4 3 2 6 6 N 1.34497 * 109.16268 * 0.26707 * 5 4 3 7 7 H 0.96997 * 126.47446 * 179.73682 * 6 5 4 8 8 C 1.36666 * 126.11230 * 270.02956 * 3 2 1 9 9 C 1.46761 * 126.83995 * 0.02562 * 8 3 2 10 10 O 1.21686 * 120.00328 * 354.92181 * 9 8 3 11 11 N 1.34775 * 120.00059 * 174.91411 * 9 8 3 12 12 C 1.46508 * 119.99727 * 5.18500 * 11 9 8 13 13 C 1.46499 * 120.00718 * 185.18421 * 11 9 8 14 14 C 1.52999 * 109.47243 * 83.82310 * 13 11 9 15 15 H 1.08994 * 109.47055 * 297.27483 * 14 13 11 16 16 C 1.53000 * 109.46979 * 177.26957 * 14 13 11 17 17 N 1.46900 * 109.46784 * 57.27198 * 14 13 11 18 18 C 1.46901 * 111.00270 * 205.98915 * 17 14 13 19 19 C 1.50693 * 109.47308 * 179.97438 * 18 17 14 20 20 O 1.21297 * 120.00234 * 359.97438 * 19 18 17 21 21 N 1.34782 * 120.00217 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99965 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00015 * 0.02562 * 22 21 19 24 24 C 1.38957 * 119.99412 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00096 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99648 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47080 * 90.00184 * 26 24 22 28 28 H 1.48499 * 109.47125 * 210.00173 * 26 24 22 29 29 H 1.48498 * 109.47535 * 330.00448 * 26 24 22 30 30 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47021 * 299.99716 * 1 2 3 32 32 H 1.09005 * 109.47476 * 59.99390 * 1 2 3 33 33 H 1.09002 * 109.47021 * 240.00284 * 2 1 3 34 34 H 1.08993 * 109.47200 * 120.00379 * 2 1 3 35 35 H 1.07991 * 125.41463 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.46655 * 56.86337 * 12 11 9 37 37 H 1.09005 * 109.46809 * 176.85863 * 12 11 9 38 38 H 1.08991 * 109.47128 * 296.86199 * 12 11 9 39 39 H 1.09000 * 109.47810 * 203.83128 * 13 11 9 40 40 H 1.09001 * 109.46524 * 323.83020 * 13 11 9 41 41 H 1.08997 * 109.47290 * 60.00263 * 16 14 13 42 42 H 1.09000 * 109.46981 * 180.02562 * 16 14 13 43 43 H 1.08999 * 109.47027 * 300.00442 * 16 14 13 44 44 H 1.00902 * 111.00327 * 329.94176 * 17 14 13 45 45 H 1.09002 * 109.46448 * 299.99796 * 18 17 14 46 46 H 1.08998 * 109.47119 * 59.99699 * 18 17 14 47 47 H 0.96999 * 119.99273 * 359.97438 * 21 19 18 48 48 H 0.97005 * 120.00170 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2947 2.1613 1.0772 5 6 2.7124 3.3450 0.7073 6 7 2.7274 3.4080 -0.6361 7 1 2.9910 4.1704 -1.1747 8 6 2.3003 2.1804 -1.1041 9 6 2.1557 1.7751 -2.5072 10 8 1.8490 0.6299 -2.7813 11 7 2.3624 2.6715 -3.4922 12 6 2.8413 4.0178 -3.1688 13 6 2.1083 2.2997 -4.8863 14 6 0.6215 2.4800 -5.1993 15 1 0.0344 1.8078 -4.5737 16 6 0.3679 2.1570 -6.6732 17 7 0.2290 3.8693 -4.9279 18 6 -1.2029 3.9599 -4.6129 19 6 -1.5674 5.3965 -4.3403 20 8 -0.7178 6.2600 -4.4019 21 7 -2.8375 5.7220 -4.0281 22 6 -3.1690 7.0288 -3.7796 23 1 -2.4125 7.7976 -3.8344 24 6 -4.4786 7.3643 -3.4583 25 7 -5.3991 6.4290 -3.3921 26 14 -4.9301 9.1449 -3.1190 27 1 -5.3352 9.8031 -4.3871 28 1 -6.0572 9.1943 -2.1535 29 1 -3.7568 9.8528 -2.5468 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.9960 4.1453 1.3746 36 1 3.7798 3.9471 -2.6190 37 1 3.0014 4.5775 -4.0904 38 1 2.0992 4.5301 -2.5567 39 1 2.6983 2.9364 -5.5456 40 1 2.3884 1.2577 -5.0412 41 1 0.6592 1.1262 -6.8746 42 1 -0.6912 2.2859 -6.8963 43 1 0.9551 2.8293 -7.2987 44 1 0.7880 4.2648 -4.1867 45 1 -1.7847 3.5911 -5.4577 46 1 -1.4199 3.3568 -3.7313 47 1 -3.5170 5.0315 -3.9793 48 1 -6.3135 6.6632 -3.1682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571415977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:38 Heat of formation + Delta-G solvation = -25.011628 kcal Electronic energy + Delta-G solvation = -30198.588688 eV Core-core repulsion = 26096.031641 eV Total energy + Delta-G solvation = -4102.557047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.38581 -40.91508 -40.13658 -38.19353 -36.46514 -35.91535 -34.96137 -33.40470 -33.19995 -32.18075 -30.26332 -28.63207 -28.19036 -27.26934 -25.81979 -24.67210 -23.45149 -22.68175 -21.36373 -21.15009 -20.41956 -19.95554 -18.77403 -18.05124 -17.56539 -17.47326 -17.19325 -16.68876 -16.52100 -16.21983 -15.82961 -15.77051 -15.59578 -15.18366 -14.92756 -14.83601 -14.44297 -14.34063 -14.20224 -13.85980 -13.61297 -13.51262 -13.39902 -13.34154 -12.93883 -12.85305 -12.79444 -12.62818 -12.43722 -12.43009 -12.13177 -12.06165 -11.99536 -11.53093 -11.46904 -11.06790 -10.93572 -10.39771 -10.05635 -10.01006 -9.53419 -9.45047 -8.49204 -5.98746 0.18741 1.36418 1.40600 1.53393 1.64389 1.78664 1.98862 2.07363 2.16382 2.26372 2.83354 3.17589 3.33988 3.44889 3.54329 3.83017 3.88508 3.96792 4.12462 4.16075 4.16757 4.21717 4.33904 4.38618 4.42161 4.47201 4.48881 4.52695 4.62294 4.65478 4.71764 4.74248 4.92051 5.01421 5.02479 5.17980 5.21557 5.28348 5.37948 5.44408 5.49255 5.81213 6.00614 6.08667 6.26999 6.34962 6.54802 6.84094 6.92298 7.08104 7.50741 8.04165 8.68260 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003237 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.271743 B = 8648.271193 C = 9793.725493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.230 3.770 6 N -0.550 5.550 7 H 0.438 0.562 8 C -0.111 4.111 9 C 0.591 3.409 10 O -0.547 6.547 11 N -0.614 5.614 12 C 0.052 3.948 13 C 0.119 3.881 14 C 0.065 3.935 15 H 0.030 0.970 16 C -0.132 4.132 17 N -0.664 5.664 18 C 0.064 3.936 19 C 0.440 3.560 20 O -0.616 6.616 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.083 0.917 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.995 3.005 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.269 1.269 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.342 0.658 45 H 0.101 0.899 46 H 0.045 0.955 47 H 0.394 0.606 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.607 -9.289 2.612 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 C -0.052 4.052 4 N -0.252 5.252 5 C -0.054 4.054 6 N -0.162 5.162 7 H 0.287 0.713 8 C -0.227 4.227 9 C 0.381 3.619 10 O -0.425 6.425 11 N -0.347 5.347 12 C -0.091 4.091 13 C -0.003 4.003 14 C -0.045 4.045 15 H 0.048 0.952 16 C -0.190 4.190 17 N -0.299 5.299 18 C -0.069 4.069 19 C 0.227 3.773 20 O -0.502 6.502 21 N -0.209 5.209 22 C -0.463 4.463 23 H 0.101 0.899 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.194 1.194 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.275 0.725 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.163 0.837 45 H 0.119 0.881 46 H 0.063 0.937 47 H 0.227 0.773 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.652 -9.386 2.553 20.155 hybrid contribution -0.863 0.908 0.158 1.263 sum 16.789 -8.478 2.711 19.003 Atomic orbital electron populations 1.21560 0.94373 1.02475 1.00566 1.20042 0.96114 0.88826 1.03598 1.21298 0.99043 0.97599 0.87291 1.70121 1.19970 1.04285 1.30831 1.26100 0.98670 0.97765 0.82883 1.44296 1.49763 1.12891 1.09233 0.71305 1.20787 1.17877 0.89402 0.94593 1.17068 0.76752 0.84807 0.83293 1.90779 1.49335 1.19228 1.83196 1.47825 1.66235 1.13450 1.07161 1.22382 0.99291 0.82388 1.05037 1.21880 0.94731 1.03475 0.80200 1.22041 0.96221 0.87874 0.98376 0.95200 1.21696 1.02002 1.01961 0.93370 1.60329 1.02137 1.18344 1.49101 1.21547 0.92001 0.92536 1.00798 1.20648 0.82747 0.91390 0.82495 1.90457 1.49647 1.51896 1.58211 1.41953 1.08623 1.09100 1.61211 1.19699 0.95048 0.85388 1.46205 0.89880 1.26090 0.94814 1.04009 0.96390 1.69684 1.03168 1.34882 1.48492 0.84904 0.77993 0.76892 0.78425 1.19589 1.19721 1.19384 0.90421 0.93196 0.94859 0.89639 0.89726 0.72511 0.89087 0.86911 0.92453 0.86802 0.88680 0.90483 0.93300 0.91214 0.83682 0.88116 0.93736 0.77262 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.89 71.98 0.71 -2.58 16 2 C -0.05 -1.19 5.99 29.85 0.18 -1.02 16 3 C 0.08 2.22 6.40 41.96 0.27 2.49 16 4 N -0.53 -13.35 11.20 -187.59 -2.10 -15.45 16 5 C 0.23 3.95 13.01 180.33 2.35 6.30 16 6 N -0.55 -9.56 5.30 -188.04 -1.00 -10.55 16 7 H 0.44 5.11 4.68 -92.71 -0.43 4.68 16 8 C -0.11 -2.74 6.79 40.01 0.27 -2.47 16 9 C 0.59 15.46 7.59 86.47 0.66 16.12 16 10 O -0.55 -16.96 14.45 -4.30 -0.06 -17.03 16 11 N -0.61 -12.72 2.51 -851.40 -2.14 -14.86 16 12 C 0.05 0.77 6.90 127.77 0.88 1.65 16 13 C 0.12 2.34 5.06 86.38 0.44 2.78 16 14 C 0.07 1.61 2.89 44.91 0.13 1.74 16 15 H 0.03 0.87 7.78 -2.39 -0.02 0.85 16 16 C -0.13 -2.76 9.43 71.98 0.68 -2.09 16 17 N -0.66 -20.51 5.94 -495.60 -2.94 -23.45 16 18 C 0.06 2.32 5.96 85.55 0.51 2.83 16 19 C 0.44 20.88 7.82 87.65 0.69 21.57 16 20 O -0.62 -32.67 15.78 -3.08 -0.05 -32.72 16 21 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 22 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 23 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 26 Si 0.99 42.40 29.55 68.60 2.03 44.42 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 29 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 2.27 6.39 -2.39 -0.02 2.26 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.26 1.71 8.06 -2.92 -0.02 1.69 16 36 H 0.09 0.84 6.77 -2.39 -0.02 0.83 16 37 H 0.11 1.48 7.66 -2.38 -0.02 1.46 16 38 H 0.06 0.99 6.52 -2.39 -0.02 0.98 16 39 H 0.11 1.73 7.77 -2.39 -0.02 1.71 16 40 H 0.09 1.86 7.54 -2.39 -0.02 1.84 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.13 7.52 -2.39 -0.02 1.11 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.34 10.59 5.24 -89.69 -0.47 10.12 16 45 H 0.10 3.39 7.50 -2.39 -0.02 3.37 16 46 H 0.04 1.59 8.05 -2.39 -0.02 1.57 16 47 H 0.39 19.74 7.90 -92.71 -0.73 19.01 16 48 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -75.79 390.98 0.81 -74.98 By element: Atomic # 1 Polarization: 47.12 SS G_CDS: -0.62 Total: 46.50 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 9.04 Total: 29.10 kcal Atomic # 7 Polarization: -135.74 SS G_CDS: -9.52 Total: -145.26 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.11 Total: -49.75 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.79 0.81 -74.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571415977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.967 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds