Wall clock time and date at job start Tue Mar 31 2020 20:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46705 * 2 1 4 4 C 1.53000 * 109.47516 * 240.00318 * 2 1 3 5 5 N 1.46499 * 109.47282 * 120.00246 * 2 1 3 6 6 N 1.40445 * 126.82209 * 353.17166 * 5 2 1 7 7 C 1.30709 * 106.79224 * 180.02562 * 6 5 2 8 8 N 1.33241 * 108.94653 * 0.02562 * 7 6 5 9 9 C 1.30831 * 109.82858 * 0.02562 * 8 7 6 10 10 C 1.50705 * 125.95886 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.46784 * 84.06773 * 10 9 8 12 12 C 1.34780 * 119.99929 * 179.97438 * 11 10 9 13 13 O 1.21581 * 119.99713 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99882 * 180.02562 * 12 11 10 15 15 C 1.47418 * 125.64689 * 359.68930 * 14 12 11 16 16 C 1.55134 * 104.72203 * 155.81703 * 15 14 12 17 17 C 1.55158 * 101.47968 * 37.29479 * 16 15 14 18 18 O 1.42907 * 110.71946 * 82.69756 * 17 16 15 19 19 C 1.50705 * 110.87244 * 205.89688 * 17 16 15 20 20 H 1.07995 * 120.00372 * 118.95307 * 19 17 16 21 21 C 1.37881 * 119.99714 * 298.95846 * 19 17 16 22 22 N 1.31514 * 119.99662 * 183.52399 * 21 19 17 23 23 Si 1.86803 * 120.00334 * 3.51601 * 21 19 17 24 24 H 1.48502 * 109.46817 * 84.79441 * 23 21 19 25 25 H 1.48492 * 109.47159 * 204.79394 * 23 21 19 26 26 H 1.48500 * 109.47056 * 324.79703 * 23 21 19 27 27 C 1.47016 * 125.64451 * 179.97438 * 14 12 11 28 28 H 1.08994 * 109.47304 * 299.99768 * 1 2 3 29 29 H 1.08997 * 109.46993 * 60.00177 * 1 2 3 30 30 H 1.09003 * 109.46511 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46890 * 183.91744 * 3 2 1 32 32 H 1.08991 * 109.47219 * 303.92167 * 3 2 1 33 33 H 1.09004 * 109.47060 * 63.92193 * 3 2 1 34 34 H 1.09004 * 109.46582 * 300.00066 * 4 2 1 35 35 H 1.09003 * 109.46911 * 59.99231 * 4 2 1 36 36 H 1.09000 * 109.47421 * 179.97438 * 4 2 1 37 37 H 1.07998 * 125.52692 * 179.97438 * 7 6 5 38 38 H 1.08989 * 109.46870 * 204.06622 * 10 9 8 39 39 H 1.09000 * 109.47109 * 324.07169 * 10 9 8 40 40 H 0.97005 * 120.00335 * 0.02562 * 11 10 9 41 41 H 1.08997 * 110.37153 * 274.74905 * 15 14 12 42 42 H 1.09001 * 110.37038 * 37.07477 * 15 14 12 43 43 H 1.08996 * 111.19593 * 279.19506 * 16 15 14 44 44 H 1.09001 * 110.90562 * 155.27075 * 16 15 14 45 45 H 0.96703 * 113.99927 * 185.02130 * 18 17 16 46 46 H 0.97003 * 120.00010 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.88392 * 300.43780 * 27 14 12 48 48 H 1.09001 * 109.88169 * 61.45292 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2466 -1.1578 2.2725 7 6 2.0751 -1.7082 3.1204 8 7 3.3139 -1.6122 2.6392 9 6 3.2945 -1.0013 1.4824 10 6 4.4936 -0.6996 0.6209 11 7 4.8144 -1.8719 -0.1971 12 6 5.8564 -1.8329 -1.0512 13 8 6.5302 -0.8250 -1.1424 14 7 6.1512 -2.9112 -1.8041 15 6 5.4251 -4.1941 -1.7892 16 6 5.7091 -4.8240 -3.1782 17 6 7.1860 -4.4084 -3.4096 18 8 8.0747 -5.3094 -2.7457 19 6 7.5004 -4.3407 -4.8819 20 1 7.8149 -3.4072 -5.3246 21 6 7.3863 -5.4706 -5.6638 22 7 7.7268 -5.4288 -6.9334 23 14 6.7483 -7.0609 -4.9199 24 1 5.2635 -7.0596 -4.9475 25 1 7.2570 -8.2139 -5.7053 26 1 7.2171 -7.1733 -3.5153 27 6 7.2539 -3.0047 -2.7720 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1277 1.4434 -0.0702 32 1 1.6204 1.9762 -0.8527 33 1 1.7351 1.9357 0.9231 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 1.8003 -2.1658 4.0593 38 1 4.2704 0.1466 -0.0287 39 1 5.3452 -0.4557 1.2559 40 1 4.2766 -2.6759 -0.1247 41 1 5.8048 -4.8358 -0.9942 42 1 4.3561 -4.0235 -1.6621 43 1 5.0594 -4.3997 -3.9436 44 1 5.6097 -5.9088 -3.1409 45 1 9.0053 -5.0512 -2.7945 46 1 7.6469 -6.2237 -7.4835 47 1 7.1374 -2.2418 -3.5416 48 1 8.2078 -2.8731 -2.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645864844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:46 Heat of formation + Delta-G solvation = 34.484832 kcal Electronic energy + Delta-G solvation = -30601.644369 eV Core-core repulsion = 26501.667282 eV Total energy + Delta-G solvation = -4099.977087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58681 -40.02449 -37.96369 -37.56766 -35.05784 -34.59272 -32.46537 -31.80986 -31.45345 -30.22970 -28.49785 -27.98368 -27.86408 -27.08753 -24.89541 -23.24846 -22.65655 -21.44846 -20.22127 -20.02991 -19.58086 -18.14715 -17.43647 -16.90514 -16.44204 -15.97649 -15.73949 -15.37576 -14.97228 -14.87103 -14.60570 -14.44194 -14.24443 -13.96456 -13.59585 -13.33591 -13.14807 -12.97986 -12.88780 -12.79343 -12.65681 -12.54377 -12.27539 -12.21711 -12.16107 -11.78544 -11.69448 -11.39450 -11.18883 -11.17966 -10.63525 -10.34432 -10.24267 -10.23382 -10.06624 -9.98436 -9.76225 -9.23776 -9.07218 -8.78375 -8.55187 -8.14597 -6.25398 -4.37583 1.16615 1.85773 2.48914 2.97275 3.24700 3.36027 3.38621 3.55979 3.67261 3.92720 4.11293 4.24499 4.34742 4.37456 4.42022 4.54467 5.00794 5.03510 5.07839 5.08668 5.10754 5.18762 5.24651 5.26085 5.28567 5.34411 5.38841 5.52606 5.62736 5.67684 5.71372 5.76765 5.78794 6.02319 6.05267 6.15747 6.25892 6.41502 6.45269 6.49001 6.55652 6.61682 7.03879 7.18572 7.44822 7.80179 8.11646 8.17034 8.69910 8.73059 8.86110 9.37420 10.84980 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.002869 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.978253 B = 9757.301334 C = 9861.405395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.174 3.826 3 C -0.165 4.165 4 C -0.173 4.173 5 N -0.354 5.354 6 N -0.311 5.311 7 C 0.193 3.807 8 N -0.527 5.527 9 C 0.262 3.738 10 C 0.218 3.782 11 N -0.744 5.744 12 C 0.724 3.276 13 O -0.592 6.592 14 N -0.624 5.624 15 C 0.102 3.898 16 C -0.124 4.124 17 C 0.216 3.784 18 O -0.573 6.573 19 C -0.551 4.551 20 H 0.079 0.921 21 C 0.089 3.911 22 N -0.886 5.886 23 Si 0.875 3.125 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.228 1.228 27 C 0.115 3.885 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.218 0.782 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.366 0.634 46 H 0.267 0.733 47 H 0.074 0.926 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 9.231 15.128 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.090 3.910 3 C -0.223 4.223 4 C -0.231 4.231 5 N -0.146 5.146 6 N -0.139 5.139 7 C -0.109 4.109 8 N -0.255 5.255 9 C -0.015 4.015 10 C 0.091 3.909 11 N -0.403 5.403 12 C 0.426 3.574 13 O -0.470 6.470 14 N -0.361 5.361 15 C -0.021 4.021 16 C -0.162 4.162 17 C 0.176 3.824 18 O -0.380 6.380 19 C -0.588 4.588 20 H 0.097 0.903 21 C -0.116 4.116 22 N -0.522 5.522 23 Si 0.703 3.297 24 H -0.210 1.210 25 H -0.227 1.227 26 H -0.151 1.151 27 C -0.007 4.007 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.213 0.787 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.818 9.618 15.276 23.354 hybrid contribution -0.175 -0.976 0.076 0.995 sum -14.992 8.641 15.352 23.133 Atomic orbital electron populations 1.21911 0.91152 1.03655 1.03161 1.20972 0.96782 0.92050 0.81150 1.22379 1.02585 0.93523 1.03857 1.22502 1.03601 1.01275 0.95724 1.50771 1.04768 1.42608 1.16472 1.78028 1.19327 1.19101 0.97411 1.26006 0.86238 0.98536 1.00168 1.70517 1.24215 1.21576 1.09142 1.24131 0.87405 0.96270 0.93713 1.19538 0.91362 0.88768 0.91191 1.44996 1.34088 1.17005 1.44251 1.15280 0.80460 0.82971 0.78710 1.90914 1.53119 1.31445 1.71567 1.47660 1.34018 1.12060 1.42319 1.22367 0.95007 0.84987 0.99755 1.23113 0.98144 1.00463 0.94515 1.19983 0.87044 0.83649 0.91719 1.86496 1.19865 1.52715 1.78899 1.21182 1.49129 0.98409 0.90119 0.90255 1.24948 0.93242 0.99089 0.94330 1.69925 1.45801 1.30095 1.06396 0.87076 0.78510 0.82208 0.81884 1.21028 1.22726 1.15127 1.22703 0.87652 1.00646 0.89750 0.91195 0.90565 0.91399 0.91085 0.89553 0.91440 0.91463 0.89524 0.90181 0.76567 0.89053 0.88033 0.76697 0.91474 0.92333 0.89305 0.90670 0.78652 0.92300 0.90802 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.05 37.16 0.30 -0.70 16 2 C 0.17 1.41 1.06 -131.82 -0.14 1.27 16 3 C -0.17 -1.13 8.53 37.16 0.32 -0.81 16 4 C -0.17 -1.43 8.36 37.16 0.31 -1.12 16 5 N -0.35 -3.64 3.46 -45.70 -0.16 -3.80 16 6 N -0.31 -3.45 11.82 29.29 0.35 -3.10 16 7 C 0.19 2.02 13.03 -91.82 -1.20 0.82 16 8 N -0.53 -6.44 11.19 -11.97 -0.13 -6.57 16 9 C 0.26 2.95 6.91 -155.70 -1.08 1.87 16 10 C 0.22 2.47 4.98 -5.19 -0.03 2.45 16 11 N -0.74 -9.57 4.39 -66.42 -0.29 -9.86 16 12 C 0.72 12.16 8.49 -86.91 -0.74 11.42 16 13 O -0.59 -11.76 16.67 5.29 0.09 -11.67 16 14 N -0.62 -10.90 3.32 -176.11 -0.59 -11.48 16 15 C 0.10 1.62 6.58 -2.41 -0.02 1.60 16 16 C -0.12 -2.40 4.81 -24.46 -0.12 -2.52 16 17 C 0.22 4.63 0.67 -89.94 -0.06 4.57 16 18 O -0.57 -12.01 10.49 -35.23 -0.37 -12.38 16 19 C -0.55 -14.23 8.82 -34.44 -0.30 -14.53 16 20 H 0.08 2.24 7.82 -52.49 -0.41 1.83 16 21 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 22 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 23 Si 0.88 20.55 23.88 -169.99 -4.06 16.49 16 24 H -0.28 -6.44 7.09 56.52 0.40 -6.03 16 25 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.23 -5.23 5.50 56.52 0.31 -4.91 16 27 C 0.12 2.28 6.21 -3.07 -0.02 2.26 16 28 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.52 5.74 -51.93 -0.30 0.22 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.79 4.38 -51.93 -0.23 0.56 16 37 H 0.22 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.09 0.95 4.40 -51.94 -0.23 0.72 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.40 4.75 6.94 -40.82 -0.28 4.47 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.76 7.29 -51.93 -0.38 0.38 16 43 H 0.09 1.73 8.04 -51.93 -0.42 1.32 16 44 H 0.07 1.49 4.97 -51.93 -0.26 1.23 16 45 H 0.37 6.70 9.08 45.56 0.41 7.12 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 47 H 0.07 1.56 7.66 -51.93 -0.40 1.16 16 48 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -32.86 374.85 -7.96 -40.82 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.36 Total: 11.94 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -2.86 Total: 8.89 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.05 Total: -59.74 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.28 Total: -24.05 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.06 Total: 16.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.86 -7.96 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645864844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.302 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds