Wall clock time and date at job start Tue Mar 31 2020 20:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46705 * 2 1 4 4 C 1.53000 * 109.47516 * 240.00318 * 2 1 3 5 5 N 1.46499 * 109.47282 * 120.00246 * 2 1 3 6 6 N 1.40445 * 126.82209 * 353.17166 * 5 2 1 7 7 C 1.30709 * 106.79224 * 180.02562 * 6 5 2 8 8 N 1.33241 * 108.94653 * 0.02562 * 7 6 5 9 9 C 1.30831 * 109.82858 * 0.02562 * 8 7 6 10 10 C 1.50705 * 125.95886 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.46784 * 84.06773 * 10 9 8 12 12 C 1.34780 * 119.99929 * 179.97438 * 11 10 9 13 13 O 1.21581 * 119.99713 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99882 * 180.02562 * 12 11 10 15 15 C 1.47418 * 125.64689 * 359.68930 * 14 12 11 16 16 C 1.55134 * 104.72203 * 155.81703 * 15 14 12 17 17 C 1.55158 * 101.47968 * 37.29479 * 16 15 14 18 18 O 1.42907 * 110.71946 * 82.69756 * 17 16 15 19 19 C 1.50705 * 110.87244 * 205.89688 * 17 16 15 20 20 H 1.07995 * 120.00372 * 118.95307 * 19 17 16 21 21 C 1.37881 * 119.99714 * 298.95846 * 19 17 16 22 22 N 1.31514 * 119.99662 * 183.52399 * 21 19 17 23 23 Si 1.86803 * 120.00334 * 3.51601 * 21 19 17 24 24 H 1.48502 * 109.46817 * 84.79441 * 23 21 19 25 25 H 1.48492 * 109.47159 * 204.79394 * 23 21 19 26 26 H 1.48500 * 109.47056 * 324.79703 * 23 21 19 27 27 C 1.47016 * 125.64451 * 179.97438 * 14 12 11 28 28 H 1.08994 * 109.47304 * 299.99768 * 1 2 3 29 29 H 1.08997 * 109.46993 * 60.00177 * 1 2 3 30 30 H 1.09003 * 109.46511 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46890 * 183.91744 * 3 2 1 32 32 H 1.08991 * 109.47219 * 303.92167 * 3 2 1 33 33 H 1.09004 * 109.47060 * 63.92193 * 3 2 1 34 34 H 1.09004 * 109.46582 * 300.00066 * 4 2 1 35 35 H 1.09003 * 109.46911 * 59.99231 * 4 2 1 36 36 H 1.09000 * 109.47421 * 179.97438 * 4 2 1 37 37 H 1.07998 * 125.52692 * 179.97438 * 7 6 5 38 38 H 1.08989 * 109.46870 * 204.06622 * 10 9 8 39 39 H 1.09000 * 109.47109 * 324.07169 * 10 9 8 40 40 H 0.97005 * 120.00335 * 0.02562 * 11 10 9 41 41 H 1.08997 * 110.37153 * 274.74905 * 15 14 12 42 42 H 1.09001 * 110.37038 * 37.07477 * 15 14 12 43 43 H 1.08996 * 111.19593 * 279.19506 * 16 15 14 44 44 H 1.09001 * 110.90562 * 155.27075 * 16 15 14 45 45 H 0.96703 * 113.99927 * 185.02130 * 18 17 16 46 46 H 0.97003 * 120.00010 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.88392 * 300.43780 * 27 14 12 48 48 H 1.09001 * 109.88169 * 61.45292 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2466 -1.1578 2.2725 7 6 2.0751 -1.7082 3.1204 8 7 3.3139 -1.6122 2.6392 9 6 3.2945 -1.0013 1.4824 10 6 4.4936 -0.6996 0.6209 11 7 4.8144 -1.8719 -0.1971 12 6 5.8564 -1.8329 -1.0512 13 8 6.5302 -0.8250 -1.1424 14 7 6.1512 -2.9112 -1.8041 15 6 5.4251 -4.1941 -1.7892 16 6 5.7091 -4.8240 -3.1782 17 6 7.1860 -4.4084 -3.4096 18 8 8.0747 -5.3094 -2.7457 19 6 7.5004 -4.3407 -4.8819 20 1 7.8149 -3.4072 -5.3246 21 6 7.3863 -5.4706 -5.6638 22 7 7.7268 -5.4288 -6.9334 23 14 6.7483 -7.0609 -4.9199 24 1 5.2635 -7.0596 -4.9475 25 1 7.2570 -8.2139 -5.7053 26 1 7.2171 -7.1733 -3.5153 27 6 7.2539 -3.0047 -2.7720 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1277 1.4434 -0.0702 32 1 1.6204 1.9762 -0.8527 33 1 1.7351 1.9357 0.9231 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 1.8003 -2.1658 4.0593 38 1 4.2704 0.1466 -0.0287 39 1 5.3452 -0.4557 1.2559 40 1 4.2766 -2.6759 -0.1247 41 1 5.8048 -4.8358 -0.9942 42 1 4.3561 -4.0235 -1.6621 43 1 5.0594 -4.3997 -3.9436 44 1 5.6097 -5.9088 -3.1409 45 1 9.0053 -5.0512 -2.7945 46 1 7.6469 -6.2237 -7.4835 47 1 7.1374 -2.2418 -3.5416 48 1 8.2078 -2.8731 -2.2611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645864844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:45 Heat of formation + Delta-G solvation = 10.448275 kcal Electronic energy + Delta-G solvation = -30602.686672 eV Core-core repulsion = 26501.667282 eV Total energy + Delta-G solvation = -4101.019390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38879 -41.39615 -39.42602 -38.29347 -36.20401 -36.15804 -34.49128 -32.80380 -32.26998 -31.66478 -30.02120 -28.67528 -28.48037 -28.16682 -26.54903 -24.19324 -23.94048 -22.25842 -21.68554 -21.22450 -20.71891 -19.63228 -19.01349 -17.82518 -17.42400 -17.11997 -16.90833 -16.66370 -16.54150 -16.17772 -15.76806 -15.44652 -15.02840 -15.00031 -14.91695 -14.79764 -14.55380 -14.16113 -14.04318 -13.89992 -13.52738 -13.41059 -13.24287 -13.21809 -13.09734 -13.00286 -12.84273 -12.82064 -12.40234 -12.37465 -12.15459 -11.85660 -11.84271 -11.41862 -11.06555 -10.94899 -10.86550 -10.78251 -10.67300 -10.41806 -10.33767 -9.53691 -8.34467 -6.49975 0.31826 1.11544 1.38610 1.48060 1.49034 1.69620 1.94429 2.03644 2.41139 2.80728 2.94171 3.01679 3.27924 3.55322 3.62683 3.64527 3.75087 3.77854 3.86072 4.03193 4.21798 4.29189 4.37197 4.45143 4.49776 4.52208 4.54823 4.63357 4.68264 4.74286 4.77538 4.81644 4.93772 5.04030 5.05687 5.07416 5.12359 5.12830 5.16823 5.30108 5.42725 5.43830 5.52674 5.72628 5.92797 6.09135 6.61483 6.85122 6.99886 7.14574 7.31592 7.40892 8.79715 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.002869 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.978253 B = 9757.301334 C = 9861.405395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 C -0.163 4.163 4 C -0.169 4.169 5 N -0.350 5.350 6 N -0.325 5.325 7 C 0.190 3.810 8 N -0.550 5.550 9 C 0.257 3.743 10 C 0.222 3.778 11 N -0.725 5.725 12 C 0.726 3.274 13 O -0.625 6.625 14 N -0.627 5.627 15 C 0.111 3.889 16 C -0.127 4.127 17 C 0.217 3.783 18 O -0.573 6.573 19 C -0.550 4.550 20 H 0.038 0.962 21 C 0.037 3.963 22 N -0.937 5.937 23 Si 0.937 3.063 24 H -0.267 1.267 25 H -0.310 1.310 26 H -0.214 1.214 27 C 0.124 3.876 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.406 0.594 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.377 0.623 46 H 0.268 0.732 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.353 8.765 17.165 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.085 3.915 3 C -0.221 4.221 4 C -0.227 4.227 5 N -0.142 5.142 6 N -0.152 5.152 7 C -0.112 4.112 8 N -0.278 5.278 9 C -0.020 4.020 10 C 0.096 3.904 11 N -0.383 5.383 12 C 0.428 3.572 13 O -0.506 6.506 14 N -0.363 5.363 15 C -0.011 4.011 16 C -0.165 4.165 17 C 0.176 3.824 18 O -0.381 6.381 19 C -0.588 4.588 20 H 0.056 0.944 21 C -0.163 4.163 22 N -0.575 5.575 23 Si 0.763 3.237 24 H -0.192 1.192 25 H -0.239 1.239 26 H -0.137 1.137 27 C 0.001 3.999 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.242 0.758 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.226 0.774 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.965 9.161 17.350 25.937 hybrid contribution 0.506 -0.713 -0.566 1.042 sum -16.459 8.448 16.783 24.979 Atomic orbital electron populations 1.21885 0.90237 1.03207 1.03972 1.21233 0.97503 0.92481 0.80323 1.22384 1.02222 0.92818 1.04664 1.22476 1.02480 1.01299 0.96481 1.50951 1.04379 1.42139 1.16735 1.78011 1.19872 1.19521 0.97825 1.26635 0.85511 0.98060 1.00976 1.70505 1.25315 1.22319 1.09710 1.23954 0.87611 0.96706 0.93689 1.19557 0.91409 0.88375 0.91091 1.44779 1.32673 1.17791 1.43102 1.15305 0.80841 0.82156 0.78879 1.90895 1.54491 1.32632 1.72616 1.47556 1.33659 1.13018 1.42096 1.22408 0.97062 0.83901 0.97766 1.23056 0.95999 1.00850 0.96618 1.19813 0.88581 0.84895 0.89066 1.86443 1.20762 1.52577 1.78306 1.21420 1.47932 0.96631 0.92782 0.94381 1.25761 0.93521 1.02556 0.94461 1.70064 1.48211 1.31116 1.08151 0.86118 0.78793 0.77511 0.81318 1.19211 1.23884 1.13661 1.22342 0.88764 0.99016 0.89818 0.91797 0.88335 0.92424 0.91715 0.87458 0.91749 0.91971 0.87834 0.91726 0.73677 0.88028 0.88590 0.75757 0.90244 0.88680 0.89878 0.90412 0.77445 0.92329 0.93083 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.05 71.98 0.58 -1.04 16 2 C 0.17 2.35 1.06 3.61 0.00 2.36 16 3 C -0.16 -1.88 8.53 71.98 0.61 -1.27 16 4 C -0.17 -2.42 8.36 71.98 0.60 -1.81 16 5 N -0.35 -6.56 3.46 -298.51 -1.03 -7.60 16 6 N -0.32 -6.60 11.82 -61.25 -0.72 -7.32 16 7 C 0.19 3.59 13.03 180.77 2.36 5.94 16 8 N -0.55 -12.47 11.19 -191.78 -2.15 -14.62 16 9 C 0.26 5.36 6.91 138.23 0.95 6.32 16 10 C 0.22 4.71 4.98 85.63 0.43 5.14 16 11 N -0.73 -17.18 4.39 -482.30 -2.12 -19.29 16 12 C 0.73 23.32 8.49 179.05 1.52 24.84 16 13 O -0.63 -24.49 16.67 -3.97 -0.07 -24.55 16 14 N -0.63 -20.81 3.32 -829.35 -2.76 -23.57 16 15 C 0.11 3.15 6.58 86.94 0.57 3.72 16 16 C -0.13 -4.62 4.81 32.07 0.15 -4.46 16 17 C 0.22 9.11 0.67 -10.35 -0.01 9.10 16 18 O -0.57 -22.96 10.49 -148.98 -1.56 -24.52 16 19 C -0.55 -29.00 8.82 25.60 0.23 -28.78 16 20 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 21 C 0.04 2.04 5.47 84.66 0.46 2.50 16 22 N -0.94 -55.87 13.96 21.45 0.30 -55.57 16 23 Si 0.94 41.93 23.88 68.60 1.64 43.57 16 24 H -0.27 -11.12 7.09 99.48 0.71 -10.41 16 25 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.21 -9.03 5.50 99.48 0.55 -8.49 16 27 C 0.12 4.90 6.21 86.73 0.54 5.44 16 28 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.84 5.74 -2.39 -0.01 0.82 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.14 4.38 -2.39 -0.01 1.12 16 37 H 0.25 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.10 1.98 4.40 -2.39 -0.01 1.97 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.41 8.51 6.94 -92.70 -0.64 7.87 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.10 2.04 7.29 -2.39 -0.02 2.03 16 43 H 0.08 3.09 8.04 -2.39 -0.02 3.08 16 44 H 0.08 2.80 4.97 -2.39 -0.01 2.79 16 45 H 0.38 13.33 9.08 -74.06 -0.67 12.65 16 46 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.05 2.22 7.66 -2.39 -0.02 2.20 16 48 H 0.06 2.28 8.06 -2.39 -0.02 2.26 16 Total: -1.00 -71.96 374.85 0.06 -71.90 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.47 Total: 33.58 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 9.00 Total: 28.00 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -8.48 Total: -127.97 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.63 Total: -49.07 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.64 Total: 43.57 kcal Total: -71.96 0.06 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645864844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.344 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds