Wall clock time and date at job start Tue Mar 31 2020 20:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46672 * 2 1 4 4 C 1.52998 * 109.46811 * 240.00034 * 2 1 3 5 5 N 1.46493 * 109.47186 * 119.99979 * 2 1 3 6 6 N 1.40452 * 126.82642 * 234.03056 * 5 2 1 7 7 C 1.30712 * 106.79354 * 180.25985 * 6 5 2 8 8 N 1.33243 * 108.94726 * 359.74197 * 7 6 5 9 9 C 1.30829 * 109.82706 * 0.02562 * 8 7 6 10 10 C 1.50709 * 125.95929 * 179.97438 * 9 8 7 11 11 N 1.46493 * 109.47083 * 83.94024 * 10 9 8 12 12 C 1.34775 * 119.99950 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99873 * 359.72560 * 12 11 10 14 14 N 1.34777 * 119.99980 * 180.02562 * 12 11 10 15 15 C 1.47423 * 125.64718 * 0.03039 * 14 12 11 16 16 C 1.54915 * 104.82810 * 204.09019 * 15 14 12 17 17 C 1.55153 * 101.58241 * 322.98797 * 16 15 14 18 18 O 1.42903 * 110.72077 * 277.13978 * 17 16 15 19 19 C 1.50704 * 110.72154 * 154.04427 * 17 16 15 20 20 H 1.07999 * 119.99769 * 359.97438 * 19 17 16 21 21 C 1.37871 * 120.00117 * 180.02562 * 19 17 16 22 22 N 1.31518 * 120.00182 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00000 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47488 * 90.00011 * 23 21 19 25 25 H 1.48505 * 109.47191 * 209.99937 * 23 21 19 26 26 H 1.48493 * 109.47388 * 329.99980 * 23 21 19 27 27 C 1.47021 * 125.64713 * 179.71382 * 14 12 11 28 28 H 1.09005 * 109.47197 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.47532 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46397 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47227 * 299.99765 * 3 2 1 33 33 H 1.08996 * 109.47338 * 60.00341 * 3 2 1 34 34 H 1.08996 * 109.47423 * 306.41709 * 4 2 1 35 35 H 1.09000 * 109.47397 * 66.42615 * 4 2 1 36 36 H 1.09011 * 109.46632 * 186.42180 * 4 2 1 37 37 H 1.07995 * 125.52079 * 179.71160 * 7 6 5 38 38 H 1.09003 * 109.46615 * 323.94025 * 10 9 8 39 39 H 1.08999 * 109.46871 * 203.94305 * 10 9 8 40 40 H 0.97001 * 119.99864 * 0.02562 * 11 10 9 41 41 H 1.08999 * 110.36723 * 322.92502 * 15 14 12 42 42 H 1.08993 * 110.37337 * 85.25290 * 15 14 12 43 43 H 1.09001 * 111.00343 * 81.06480 * 16 15 14 44 44 H 1.09004 * 110.99945 * 204.87545 * 16 15 14 45 45 H 0.96700 * 113.99932 * 180.02562 * 18 17 16 46 46 H 0.96998 * 119.99932 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.88901 * 298.40066 * 27 14 12 48 48 H 1.09002 * 109.88387 * 59.56481 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 2.9215 -0.1894 2.1478 7 6 3.0872 -1.1281 3.0422 8 7 2.3395 -2.1795 2.7095 9 6 1.6888 -1.9288 1.6026 10 6 0.7400 -2.8671 0.9019 11 7 -0.5892 -2.7600 1.5081 12 6 -1.6057 -3.5112 1.0403 13 8 -1.4206 -4.2741 0.1119 14 7 -2.8288 -3.4124 1.5977 15 6 -3.1931 -2.5271 2.7189 16 6 -4.4307 -3.1967 3.3668 17 6 -5.1749 -3.7469 2.1216 18 8 -5.9687 -2.7253 1.5147 19 6 -6.0278 -4.9332 2.4911 20 1 -6.0536 -5.2824 3.5127 21 6 -6.7742 -5.5733 1.5247 22 7 -6.7424 -5.1484 0.2804 23 14 -7.8318 -7.0433 1.9828 24 1 -9.1880 -6.5766 2.3680 25 1 -7.9359 -7.9601 0.8192 26 1 -7.2127 -7.7618 3.1253 27 6 -4.0223 -4.1648 1.1841 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.5858 -1.7103 -1.3086 35 1 1.7735 -0.1453 -2.1355 36 1 3.1239 -0.8219 -1.1936 37 1 3.7270 -1.0622 3.9098 38 1 1.1027 -3.8903 0.9997 39 1 0.6804 -2.6020 -0.1537 40 1 -0.7380 -2.1479 2.2458 41 1 -2.3748 -2.4675 3.4365 42 1 -3.4487 -1.5337 2.3504 43 1 -4.1328 -4.0061 4.0333 44 1 -5.0402 -2.4631 3.8946 45 1 -6.4549 -3.0181 0.7317 46 1 -7.2678 -5.5985 -0.3994 47 1 -4.2746 -3.9217 0.1520 48 1 -3.8379 -5.2347 1.2806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645864845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:49 Heat of formation + Delta-G solvation = 20.736491 kcal Electronic energy + Delta-G solvation = -30535.877652 eV Core-core repulsion = 26435.304393 eV Total energy + Delta-G solvation = -4100.573260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51243 -39.75728 -37.71280 -37.39564 -34.87582 -34.32768 -32.17726 -31.70623 -31.36950 -30.01139 -28.06078 -27.87512 -27.78155 -26.90163 -24.78827 -23.19836 -22.62441 -21.36246 -20.03899 -19.76111 -19.44970 -17.79165 -17.16089 -16.78873 -16.32365 -15.87981 -15.66700 -15.18267 -15.00659 -14.72300 -14.38253 -14.34151 -14.08682 -13.74544 -13.44286 -13.07412 -12.94823 -12.89485 -12.80606 -12.71321 -12.59988 -12.22306 -12.18511 -12.11533 -11.72471 -11.65788 -11.48191 -11.11828 -11.07262 -10.84856 -10.67988 -10.50062 -10.18813 -10.17137 -10.04446 -9.93216 -9.64715 -9.36544 -9.06105 -8.68129 -8.34543 -7.84832 -6.30887 -4.39175 1.24453 1.92553 2.59369 3.14523 3.21620 3.28549 3.31401 3.59101 3.77073 3.98935 4.24619 4.29176 4.36612 4.40599 4.49657 4.62040 4.96758 5.07472 5.13898 5.19370 5.25278 5.31102 5.33482 5.35027 5.41039 5.46977 5.66789 5.69035 5.76404 5.76694 5.83691 5.98182 6.04407 6.09738 6.22366 6.42592 6.47454 6.55636 6.68938 6.84370 6.91511 7.18798 7.29055 7.51317 7.72409 7.87221 7.99461 8.39802 8.64052 8.97506 9.29615 9.41684 10.76957 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002673 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.066405 B =10473.237743 C =10682.360912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.174 3.826 3 C -0.141 4.141 4 C -0.166 4.166 5 N -0.354 5.354 6 N -0.313 5.313 7 C 0.193 3.807 8 N -0.527 5.527 9 C 0.264 3.736 10 C 0.218 3.782 11 N -0.746 5.746 12 C 0.720 3.280 13 O -0.593 6.593 14 N -0.625 5.625 15 C 0.102 3.898 16 C -0.116 4.116 17 C 0.249 3.751 18 O -0.587 6.587 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.121 3.879 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.218 0.782 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.397 0.603 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.386 0.614 46 H 0.271 0.729 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.280 11.743 -0.163 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.091 3.909 3 C -0.198 4.198 4 C -0.224 4.224 5 N -0.147 5.147 6 N -0.140 5.140 7 C -0.110 4.110 8 N -0.255 5.255 9 C -0.013 4.013 10 C 0.091 3.909 11 N -0.406 5.406 12 C 0.422 3.578 13 O -0.471 6.471 14 N -0.362 5.362 15 C -0.021 4.021 16 C -0.154 4.154 17 C 0.208 3.792 18 O -0.397 6.397 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.001 4.001 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.231 0.769 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.238 0.762 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.965 11.912 -0.460 20.734 hybrid contribution -0.805 -0.852 0.039 1.173 sum 16.160 11.060 -0.422 19.587 Atomic orbital electron populations 1.22492 0.91650 1.04986 1.03934 1.20960 0.95015 0.93833 0.81124 1.21905 1.02407 0.92390 1.03116 1.22386 1.02261 1.01642 0.96094 1.50766 1.32715 1.11509 1.19694 1.78016 1.11250 1.23024 1.01737 1.25998 0.98723 0.86919 0.99347 1.70523 1.12718 1.29093 1.13167 1.24172 0.97775 0.86506 0.92827 1.19528 0.78958 0.97213 0.95219 1.45019 1.08059 1.47316 1.40162 1.15367 0.79450 0.80861 0.82151 1.90908 1.82746 1.42294 1.31185 1.47921 1.08258 1.44312 1.35679 1.22259 0.97620 0.94073 0.88150 1.22736 0.94529 0.99936 0.98211 1.19487 0.86647 0.86103 0.86917 1.86070 1.64784 1.40059 1.48789 1.21517 1.26870 1.13314 0.95790 0.91473 1.25071 0.96095 0.97379 0.94710 1.69571 1.41128 1.41681 1.01120 0.86383 0.80412 0.81779 0.78235 1.20398 1.20977 1.19686 1.22942 0.82112 0.95136 0.99950 0.91483 0.89629 0.90109 0.91246 0.90620 0.91399 0.90981 0.89604 0.91471 0.76606 0.88144 0.89184 0.76883 0.92614 0.91984 0.90476 0.90545 0.76175 0.91890 0.91889 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 8.37 37.16 0.31 -1.24 16 2 C 0.17 1.52 1.06 -131.82 -0.14 1.38 16 3 C -0.14 -1.05 8.05 37.16 0.30 -0.75 16 4 C -0.17 -1.24 8.51 37.16 0.32 -0.93 16 5 N -0.35 -3.89 3.47 -45.70 -0.16 -4.04 16 6 N -0.31 -3.63 11.83 29.29 0.35 -3.28 16 7 C 0.19 2.12 13.03 -91.81 -1.20 0.92 16 8 N -0.53 -6.83 11.19 -11.97 -0.13 -6.96 16 9 C 0.26 3.20 6.90 -155.69 -1.07 2.13 16 10 C 0.22 2.74 4.99 -5.19 -0.03 2.72 16 11 N -0.75 -10.67 4.41 -66.42 -0.29 -10.96 16 12 C 0.72 13.63 8.49 -86.92 -0.74 12.89 16 13 O -0.59 -13.28 16.67 5.29 0.09 -13.19 16 14 N -0.63 -12.36 3.33 -176.24 -0.59 -12.94 16 15 C 0.10 1.73 6.56 -2.53 -0.02 1.71 16 16 C -0.12 -2.25 6.23 -24.58 -0.15 -2.40 16 17 C 0.25 5.87 0.86 -89.93 -0.08 5.79 16 18 O -0.59 -14.44 13.07 -35.23 -0.46 -14.90 16 19 C -0.54 -13.76 8.12 -34.44 -0.28 -14.04 16 20 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 21 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 22 N -0.90 -23.39 10.97 55.43 0.61 -22.78 16 23 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.12 2.84 5.54 -3.06 -0.02 2.82 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.88 4.45 -51.93 -0.23 0.65 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.59 5.73 -51.93 -0.30 0.29 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.05 4.36 -51.93 -0.23 0.83 16 40 H 0.40 5.21 6.94 -40.82 -0.28 4.92 16 41 H 0.06 0.78 7.30 -51.93 -0.38 0.41 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.39 9.83 6.98 45.56 0.32 10.15 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 47 H 0.06 1.62 8.07 -51.93 -0.42 1.20 16 48 H 0.06 1.67 7.82 -51.93 -0.41 1.27 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -30.58 382.99 -9.26 -39.84 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.53 Total: 15.56 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -2.89 Total: 12.71 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.22 Total: -60.97 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.37 Total: -28.09 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.58 -9.26 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645864845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.573 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds