Wall clock time and date at job start Tue Mar 31 2020 20:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46672 * 2 1 4 4 C 1.52998 * 109.46811 * 240.00034 * 2 1 3 5 5 N 1.46493 * 109.47186 * 119.99979 * 2 1 3 6 6 N 1.40452 * 126.82642 * 234.03056 * 5 2 1 7 7 C 1.30712 * 106.79354 * 180.25985 * 6 5 2 8 8 N 1.33243 * 108.94726 * 359.74197 * 7 6 5 9 9 C 1.30829 * 109.82706 * 0.02562 * 8 7 6 10 10 C 1.50709 * 125.95929 * 179.97438 * 9 8 7 11 11 N 1.46493 * 109.47083 * 83.94024 * 10 9 8 12 12 C 1.34775 * 119.99950 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99873 * 359.72560 * 12 11 10 14 14 N 1.34777 * 119.99980 * 180.02562 * 12 11 10 15 15 C 1.47423 * 125.64718 * 0.03039 * 14 12 11 16 16 C 1.54915 * 104.82810 * 204.09019 * 15 14 12 17 17 C 1.55153 * 101.58241 * 322.98797 * 16 15 14 18 18 O 1.42903 * 110.72077 * 277.13978 * 17 16 15 19 19 C 1.50704 * 110.72154 * 154.04427 * 17 16 15 20 20 H 1.07999 * 119.99769 * 359.97438 * 19 17 16 21 21 C 1.37871 * 120.00117 * 180.02562 * 19 17 16 22 22 N 1.31518 * 120.00182 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00000 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47488 * 90.00011 * 23 21 19 25 25 H 1.48505 * 109.47191 * 209.99937 * 23 21 19 26 26 H 1.48493 * 109.47388 * 329.99980 * 23 21 19 27 27 C 1.47021 * 125.64713 * 179.71382 * 14 12 11 28 28 H 1.09005 * 109.47197 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.47532 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46397 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47227 * 299.99765 * 3 2 1 33 33 H 1.08996 * 109.47338 * 60.00341 * 3 2 1 34 34 H 1.08996 * 109.47423 * 306.41709 * 4 2 1 35 35 H 1.09000 * 109.47397 * 66.42615 * 4 2 1 36 36 H 1.09011 * 109.46632 * 186.42180 * 4 2 1 37 37 H 1.07995 * 125.52079 * 179.71160 * 7 6 5 38 38 H 1.09003 * 109.46615 * 323.94025 * 10 9 8 39 39 H 1.08999 * 109.46871 * 203.94305 * 10 9 8 40 40 H 0.97001 * 119.99864 * 0.02562 * 11 10 9 41 41 H 1.08999 * 110.36723 * 322.92502 * 15 14 12 42 42 H 1.08993 * 110.37337 * 85.25290 * 15 14 12 43 43 H 1.09001 * 111.00343 * 81.06480 * 16 15 14 44 44 H 1.09004 * 110.99945 * 204.87545 * 16 15 14 45 45 H 0.96700 * 113.99932 * 180.02562 * 18 17 16 46 46 H 0.96998 * 119.99932 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.88901 * 298.40066 * 27 14 12 48 48 H 1.09002 * 109.88387 * 59.56481 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 2.9215 -0.1894 2.1478 7 6 3.0872 -1.1281 3.0422 8 7 2.3395 -2.1795 2.7095 9 6 1.6888 -1.9288 1.6026 10 6 0.7400 -2.8671 0.9019 11 7 -0.5892 -2.7600 1.5081 12 6 -1.6057 -3.5112 1.0403 13 8 -1.4206 -4.2741 0.1119 14 7 -2.8288 -3.4124 1.5977 15 6 -3.1931 -2.5271 2.7189 16 6 -4.4307 -3.1967 3.3668 17 6 -5.1749 -3.7469 2.1216 18 8 -5.9687 -2.7253 1.5147 19 6 -6.0278 -4.9332 2.4911 20 1 -6.0536 -5.2824 3.5127 21 6 -6.7742 -5.5733 1.5247 22 7 -6.7424 -5.1484 0.2804 23 14 -7.8318 -7.0433 1.9828 24 1 -9.1880 -6.5766 2.3680 25 1 -7.9359 -7.9601 0.8192 26 1 -7.2127 -7.7618 3.1253 27 6 -4.0223 -4.1648 1.1841 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.5858 -1.7103 -1.3086 35 1 1.7735 -0.1453 -2.1355 36 1 3.1239 -0.8219 -1.1936 37 1 3.7270 -1.0622 3.9098 38 1 1.1027 -3.8903 0.9997 39 1 0.6804 -2.6020 -0.1537 40 1 -0.7380 -2.1479 2.2458 41 1 -2.3748 -2.4675 3.4365 42 1 -3.4487 -1.5337 2.3504 43 1 -4.1328 -4.0061 4.0333 44 1 -5.0402 -2.4631 3.8946 45 1 -6.4549 -3.0181 0.7317 46 1 -7.2678 -5.5985 -0.3994 47 1 -4.2746 -3.9217 0.1520 48 1 -3.8379 -5.2347 1.2806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645864845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:49 Heat of formation + Delta-G solvation = 0.352197 kcal Electronic energy + Delta-G solvation = -30536.761582 eV Core-core repulsion = 26435.304393 eV Total energy + Delta-G solvation = -4101.457189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38564 -41.29496 -39.22650 -38.28756 -36.16570 -36.09762 -34.14777 -32.77164 -32.25778 -31.53904 -29.65947 -28.63810 -28.48293 -28.09860 -26.53165 -24.27622 -23.92598 -22.24000 -21.44685 -21.23221 -20.66451 -19.29986 -18.94295 -17.79687 -17.43224 -17.18224 -16.94296 -16.60038 -16.25667 -16.17867 -15.75372 -15.34776 -15.01115 -14.89741 -14.76390 -14.65860 -14.49751 -14.21134 -13.78064 -13.48763 -13.45914 -13.40929 -13.31491 -13.22818 -12.99950 -12.84522 -12.82240 -12.54617 -12.39533 -12.30104 -12.27741 -12.08727 -11.85963 -11.44884 -11.19244 -11.06383 -10.86639 -10.67243 -10.61931 -10.39807 -10.27783 -9.45719 -8.25721 -6.40888 0.31827 1.11502 1.42325 1.45318 1.53325 1.54796 1.97170 2.07159 2.39238 2.82154 3.00345 3.00950 3.28191 3.62981 3.64332 3.77173 3.80596 3.85786 4.07468 4.16233 4.29646 4.36899 4.37890 4.49898 4.53971 4.57516 4.63269 4.67954 4.72335 4.74706 4.77631 5.04380 5.04827 5.12216 5.12698 5.13549 5.17666 5.21042 5.30737 5.38010 5.43465 5.48769 5.72107 5.77330 5.96145 6.09581 6.65205 6.94416 7.00067 7.31079 7.41038 7.45568 8.80491 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002673 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.066405 B =10473.237743 C =10682.360912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.167 3.833 3 C -0.134 4.134 4 C -0.163 4.163 5 N -0.349 5.349 6 N -0.323 5.323 7 C 0.191 3.809 8 N -0.550 5.550 9 C 0.259 3.741 10 C 0.221 3.779 11 N -0.723 5.723 12 C 0.721 3.279 13 O -0.632 6.632 14 N -0.630 5.630 15 C 0.108 3.892 16 C -0.112 4.112 17 C 0.235 3.765 18 O -0.589 6.589 19 C -0.557 4.557 20 H 0.066 0.934 21 C 0.027 3.973 22 N -0.915 5.915 23 Si 0.962 3.038 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.140 3.860 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.249 0.751 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.406 0.594 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.379 0.621 46 H 0.271 0.729 47 H 0.031 0.969 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.272 13.088 0.729 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.084 3.916 3 C -0.192 4.192 4 C -0.221 4.221 5 N -0.142 5.142 6 N -0.151 5.151 7 C -0.111 4.111 8 N -0.279 5.279 9 C -0.019 4.019 10 C 0.095 3.905 11 N -0.382 5.382 12 C 0.423 3.577 13 O -0.513 6.513 14 N -0.366 5.366 15 C -0.014 4.014 16 C -0.149 4.149 17 C 0.194 3.806 18 O -0.398 6.398 19 C -0.595 4.595 20 H 0.085 0.915 21 C -0.174 4.174 22 N -0.555 5.555 23 Si 0.788 3.212 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.194 1.194 27 C 0.016 3.984 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.265 0.735 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.242 0.758 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.230 0.770 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 17.991 13.311 0.467 22.385 hybrid contribution -1.055 -1.228 -0.258 1.640 sum 16.935 12.083 0.210 20.805 Atomic orbital electron populations 1.22460 0.91747 1.03804 1.04652 1.21235 0.94916 0.94634 0.80769 1.21879 1.02016 0.91454 1.03826 1.22391 1.01947 1.01399 0.96380 1.50954 1.32180 1.11092 1.19963 1.78003 1.11580 1.23480 1.02035 1.26653 0.98478 0.86036 0.99970 1.70508 1.13462 1.30196 1.13708 1.23894 0.97999 0.86930 0.93035 1.19535 0.77961 0.97192 0.95802 1.44745 1.07656 1.46029 1.39777 1.15435 0.79784 0.80812 0.81691 1.90879 1.83412 1.44064 1.32963 1.47816 1.07689 1.44534 1.36591 1.22373 0.97885 0.93445 0.87671 1.22724 0.95080 1.00517 0.96616 1.19681 0.86400 0.85969 0.88524 1.86059 1.64887 1.40394 1.48473 1.21844 1.27494 1.14321 0.95855 0.91531 1.25784 0.97234 0.99658 0.94716 1.69667 1.41601 1.42518 1.01728 0.85483 0.79011 0.78903 0.77815 1.19813 1.21075 1.19366 1.22414 0.83979 0.93653 0.98377 0.91940 0.87798 0.92080 0.91746 0.88257 0.92327 0.91903 0.87353 0.91715 0.73546 0.88898 0.88219 0.75778 0.88863 0.90906 0.89976 0.89227 0.77044 0.91921 0.95022 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.37 71.98 0.60 -2.12 16 2 C 0.17 2.60 1.06 3.60 0.00 2.60 16 3 C -0.13 -1.71 8.05 71.98 0.58 -1.13 16 4 C -0.16 -2.15 8.51 71.98 0.61 -1.54 16 5 N -0.35 -7.12 3.47 -298.51 -1.03 -8.16 16 6 N -0.32 -6.93 11.83 -61.25 -0.72 -7.65 16 7 C 0.19 3.82 13.03 180.76 2.36 6.18 16 8 N -0.55 -13.44 11.19 -191.77 -2.15 -15.58 16 9 C 0.26 5.94 6.90 138.23 0.95 6.90 16 10 C 0.22 5.42 4.99 85.64 0.43 5.85 16 11 N -0.72 -19.91 4.41 -482.30 -2.13 -22.04 16 12 C 0.72 27.17 8.49 179.05 1.52 28.69 16 13 O -0.63 -28.86 16.67 -3.98 -0.07 -28.92 16 14 N -0.63 -24.73 3.33 -829.75 -2.76 -27.49 16 15 C 0.11 3.44 6.56 86.86 0.57 4.01 16 16 C -0.11 -4.15 6.23 31.99 0.20 -3.95 16 17 C 0.23 11.13 0.86 -10.35 -0.01 11.12 16 18 O -0.59 -29.22 13.07 -148.98 -1.95 -31.17 16 19 C -0.56 -28.80 8.12 25.60 0.21 -28.59 16 20 H 0.07 3.36 7.76 -2.91 -0.02 3.34 16 21 C 0.03 1.39 5.28 84.65 0.45 1.84 16 22 N -0.92 -48.90 10.97 21.45 0.24 -48.67 16 23 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.14 6.76 5.54 86.73 0.48 7.24 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.24 4.45 -2.38 -0.01 1.23 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.95 5.73 -2.39 -0.01 0.94 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.25 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.10 2.29 4.36 -2.39 -0.01 2.28 16 40 H 0.41 9.83 6.94 -92.71 -0.64 9.18 16 41 H 0.09 2.30 7.30 -2.39 -0.02 2.28 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 44 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.38 19.80 6.98 -74.06 -0.52 19.28 16 46 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 47 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 48 H 0.03 1.76 7.82 -2.39 -0.02 1.74 16 Total: -1.00 -67.10 382.99 0.25 -66.85 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.16 Total: 42.08 kcal Atomic # 6 Polarization: 28.14 SS G_CDS: 8.95 Total: 37.09 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -8.56 Total: -129.59 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -2.01 Total: -60.09 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -67.10 0.25 -66.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645864845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.206 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds