Wall clock time and date at job start Tue Mar 31 2020 20:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47497 * 2 1 4 4 C 1.53012 * 109.46687 * 119.99792 * 2 1 3 5 5 H 1.08999 * 109.46900 * 54.20540 * 4 2 1 6 6 C 1.52997 * 109.46847 * 294.20826 * 4 2 1 7 7 N 1.46502 * 109.46910 * 185.00319 * 6 4 2 8 8 C 1.34772 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21287 * 120.00174 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00022 * 179.72153 * 8 7 6 11 11 N 1.46499 * 109.47352 * 180.26997 * 10 8 7 12 12 C 1.36884 * 126.39691 * 89.99876 * 11 10 8 13 13 C 1.34666 * 106.82234 * 180.02562 * 12 11 10 14 14 N 1.34129 * 108.01558 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25904 * 359.72478 * 14 13 12 16 16 N 1.46893 * 109.46864 * 174.20658 * 4 2 1 17 17 C 1.46897 * 111.00201 * 276.85036 * 16 4 2 18 18 C 1.50701 * 109.47474 * 176.15513 * 17 16 4 19 19 O 1.21297 * 119.99790 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00220 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99778 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00327 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99550 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00135 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47415 * 119.99915 * 25 23 21 28 28 H 1.48507 * 109.46708 * 239.99857 * 25 23 21 29 29 H 1.08991 * 109.47054 * 305.56800 * 1 2 3 30 30 H 1.08996 * 109.46272 * 65.56698 * 1 2 3 31 31 H 1.09002 * 109.47014 * 185.56091 * 1 2 3 32 32 H 1.09001 * 109.47310 * 239.99036 * 2 1 3 33 33 H 1.08996 * 109.47204 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46491 * 299.99616 * 3 2 1 35 35 H 1.08997 * 109.46939 * 59.99378 * 3 2 1 36 36 H 1.08999 * 109.47539 * 64.99924 * 6 4 2 37 37 H 1.09004 * 109.47026 * 304.99935 * 6 4 2 38 38 H 0.96997 * 120.00082 * 359.97438 * 7 6 4 39 39 H 1.08992 * 109.47018 * 300.27463 * 10 8 7 40 40 H 1.09001 * 109.47095 * 60.27455 * 10 8 7 41 41 H 1.08001 * 126.58825 * 359.97162 * 12 11 10 42 42 H 1.07996 * 125.99461 * 179.97438 * 13 12 11 43 43 H 1.08002 * 125.65495 * 180.29252 * 15 14 13 44 44 H 1.00900 * 111.00558 * 40.80690 * 16 4 2 45 45 H 1.09006 * 109.47111 * 296.14848 * 17 16 4 46 46 H 1.08997 * 109.47462 * 56.15201 * 17 16 4 47 47 H 0.96995 * 119.99787 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00067 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 1.5944 -1.7146 1.3028 6 6 1.6522 0.0792 2.4943 7 7 2.2417 -0.5467 3.6805 8 6 2.0327 -0.0109 4.8993 9 8 1.3569 0.9897 5.0141 10 6 2.6338 -0.6583 6.1202 11 7 2.2578 0.1049 7.3129 12 6 1.1474 -0.0945 8.0881 13 6 1.1908 0.8217 9.0740 14 7 2.2972 1.5608 8.9051 15 6 2.9441 1.1336 7.8554 16 7 3.5022 -0.8436 1.1816 17 6 3.8965 -2.0065 0.3753 18 6 5.3978 -2.0453 0.2500 19 8 6.0729 -1.1881 0.7799 20 7 5.9902 -3.0318 -0.4516 21 6 7.3559 -3.0667 -0.5660 22 1 7.9571 -2.3040 -0.0935 23 6 7.9667 -4.0841 -1.2889 24 7 7.2352 -5.0125 -1.8633 25 14 9.8277 -4.1322 -1.4442 26 1 10.4154 -2.9817 -0.7119 27 1 10.3400 -5.4008 -0.8669 28 1 10.2069 -4.0519 -2.8778 29 1 -0.3633 0.5977 0.8359 30 1 -0.3632 0.4251 -0.9356 31 1 -0.3633 -1.0228 0.0996 32 1 1.8934 -0.5140 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 0.5668 0.0945 2.5930 37 1 2.0229 1.0999 2.3999 38 1 2.7819 -1.3471 3.5887 39 1 2.2627 -1.6791 6.2101 40 1 3.7197 -0.6734 6.0260 41 1 0.3829 -0.8424 7.9374 42 1 0.4620 0.9411 9.8621 43 1 3.8733 1.5373 7.4811 44 1 3.9198 0.0026 0.8240 45 1 3.5487 -2.9191 0.8596 46 1 3.4510 -1.9289 -0.6164 47 1 5.4503 -3.7170 -0.8756 48 1 7.6616 -5.7229 -2.3677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667524331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:42 Heat of formation + Delta-G solvation = -10.165033 kcal Electronic energy + Delta-G solvation = -28900.813654 eV Core-core repulsion = 24798.900403 eV Total energy + Delta-G solvation = -4101.913250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18240 -39.95840 -38.81868 -37.76770 -34.42267 -34.15836 -34.11014 -33.16973 -31.31588 -29.74725 -29.29475 -27.67682 -27.45518 -25.97955 -24.15758 -23.18733 -21.57450 -21.45810 -20.65834 -19.65579 -19.42378 -18.05765 -17.78456 -17.50299 -16.68091 -16.04749 -15.74490 -15.37691 -15.10579 -14.91278 -14.60493 -14.42009 -14.28707 -14.04295 -13.96519 -13.92323 -13.55395 -13.42142 -13.33494 -13.24786 -12.64609 -12.45271 -12.35448 -12.12298 -11.95194 -11.68580 -11.59326 -11.30737 -11.11921 -11.00324 -10.70281 -10.52889 -10.41988 -10.31692 -10.11035 -9.62846 -9.61851 -9.18036 -8.61278 -8.59714 -8.24622 -8.06806 -6.51581 -3.92701 1.84646 2.31919 2.45185 3.07143 3.09153 3.15940 3.20849 3.27484 3.78423 3.95014 4.18970 4.36241 4.41632 4.52606 4.62616 4.63479 4.69882 4.73955 4.80481 5.01066 5.02713 5.11819 5.16524 5.30506 5.34743 5.44964 5.51437 5.55575 5.65212 5.66507 5.70579 5.77754 5.83869 5.89211 6.04417 6.08585 6.10482 6.15457 6.28424 6.60377 6.97258 7.00895 7.33017 7.46067 7.47350 7.95878 7.96029 7.97985 8.49766 9.07836 9.43207 9.93644 10.65912 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.002416 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.029871 B =11584.505915 C =13579.791675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.156 4.156 4 C 0.076 3.924 5 H 0.085 0.915 6 C 0.131 3.869 7 N -0.705 5.705 8 C 0.493 3.507 9 O -0.532 6.532 10 C 0.085 3.915 11 N -0.444 5.444 12 C -0.048 4.048 13 C -0.032 4.032 14 N -0.497 5.497 15 C 0.195 3.805 16 N -0.664 5.664 17 C 0.048 3.952 18 C 0.438 3.562 19 O -0.585 6.585 20 N -0.561 5.561 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.171 0.829 42 H 0.168 0.832 43 H 0.203 0.797 44 H 0.355 0.645 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 4.117 8.836 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.213 4.213 4 C -0.035 4.035 5 H 0.103 0.897 6 C 0.007 3.993 7 N -0.358 5.358 8 C 0.277 3.723 9 O -0.408 6.408 10 C -0.042 4.042 11 N -0.127 5.127 12 C -0.181 4.181 13 C -0.179 4.179 14 N -0.215 5.215 15 C -0.088 4.088 16 N -0.298 5.298 17 C -0.084 4.084 18 C 0.223 3.777 19 O -0.469 6.469 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.247 0.753 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.188 0.812 42 H 0.185 0.815 43 H 0.220 0.780 44 H 0.177 0.823 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.625 5.491 10.138 18.623 hybrid contribution 0.380 -1.421 -2.164 2.617 sum -14.244 4.070 7.974 16.824 Atomic orbital electron populations 1.21851 0.94709 1.01861 1.02023 1.21767 0.96618 0.97277 0.98889 1.21966 1.01530 0.95603 1.02201 1.21921 0.89418 0.99135 0.93017 0.89673 1.21498 0.97467 0.97350 0.82998 1.45746 1.53155 1.31433 1.05437 1.20656 0.81642 0.85166 0.84872 1.90781 1.39042 1.24868 1.86146 1.21708 1.03429 0.96442 0.82650 1.45005 1.19592 1.27215 1.20846 1.22649 0.93454 1.05854 0.96106 1.22234 0.98318 0.96129 1.01206 1.70284 1.07351 1.26772 1.17051 1.24990 1.00353 0.89874 0.93552 1.60304 1.05653 1.07540 1.56294 1.21724 0.95719 0.94713 0.96252 1.19787 0.88606 0.84884 0.84418 1.90535 1.65069 1.40267 1.51068 1.41874 1.07790 1.24346 1.45756 1.19743 0.81748 1.10800 1.30670 0.87846 1.25275 1.00635 0.95480 0.96504 1.69612 1.36204 1.14007 1.34310 0.85806 0.82181 0.78368 0.78038 1.19186 1.20679 1.20724 0.92358 0.92593 0.92552 0.90486 0.92128 0.92393 0.91953 0.91168 0.90856 0.75265 0.86066 0.85432 0.81183 0.81495 0.78039 0.82277 0.89623 0.93629 0.77468 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.83 37.16 0.33 -0.80 16 2 C -0.12 -1.13 2.78 -90.61 -0.25 -1.39 16 3 C -0.16 -1.48 8.50 37.16 0.32 -1.16 16 4 C 0.08 0.73 1.95 -67.71 -0.13 0.60 16 5 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 6 C 0.13 1.30 4.67 -4.04 -0.02 1.28 16 7 N -0.71 -6.70 5.39 -60.29 -0.32 -7.03 16 8 C 0.49 5.24 7.90 -10.99 -0.09 5.16 16 9 O -0.53 -7.99 16.43 5.55 0.09 -7.90 16 10 C 0.08 0.64 6.63 -5.19 -0.03 0.60 16 11 N -0.44 -4.54 2.24 -119.87 -0.27 -4.81 16 12 C -0.05 -0.49 11.58 -16.56 -0.19 -0.68 16 13 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 14 N -0.50 -6.77 11.25 -14.67 -0.17 -6.93 16 15 C 0.19 2.26 12.56 -90.38 -1.14 1.13 16 16 N -0.66 -8.58 5.38 -107.99 -0.58 -9.16 16 17 C 0.05 0.72 5.97 -4.98 -0.03 0.69 16 18 C 0.44 9.36 7.81 -10.98 -0.09 9.27 16 19 O -0.58 -14.62 15.69 5.54 0.09 -14.53 16 20 N -0.56 -13.26 5.29 -10.96 -0.06 -13.32 16 21 C -0.30 -7.97 9.68 -14.93 -0.14 -8.11 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.51 13.05 55.50 0.72 -22.79 16 25 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.44 6.98 -51.93 -0.36 0.08 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.77 7.17 -51.93 -0.37 0.40 16 33 H 0.06 0.65 6.47 -51.93 -0.34 0.32 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.58 6.23 -51.93 -0.32 0.26 16 36 H 0.07 0.68 6.97 -51.93 -0.36 0.32 16 37 H 0.07 0.84 6.05 -51.93 -0.31 0.52 16 38 H 0.41 3.52 8.14 -40.82 -0.33 3.19 16 39 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.20 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.35 5.18 6.19 -39.29 -0.24 4.94 16 45 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 46 H 0.05 0.63 7.16 -51.93 -0.37 0.25 16 47 H 0.39 8.86 7.90 -40.82 -0.32 8.54 16 48 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -34.61 397.42 -8.37 -42.97 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -7.06 Total: 15.75 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.77 Total: 6.50 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.67 Total: -64.04 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.18 Total: -22.43 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.61 -8.37 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667524331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.810 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds