Wall clock time and date at job start Tue Mar 31 2020 19:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 C 1.50697 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.99187 * 269.95625 * 4 3 2 6 6 N 1.39931 * 108.89964 * 180.02562 * 5 4 3 7 7 H 0.97003 * 125.75293 * 179.97438 * 6 5 4 8 8 C 1.34254 * 108.49155 * 359.75152 * 6 5 4 9 9 C 1.38038 * 107.41955 * 0.39552 * 8 6 5 10 10 C 1.47433 * 126.41804 * 179.87069 * 9 8 6 11 11 O 1.21598 * 120.00022 * 179.68284 * 10 9 8 12 12 N 1.34771 * 119.99504 * 359.68944 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47196 * 64.99810 * 14 13 12 16 16 C 1.52997 * 109.47504 * 184.99959 * 14 13 12 17 17 N 1.46905 * 109.47150 * 305.00258 * 14 13 12 18 18 C 1.46896 * 111.00168 * 155.00133 * 17 14 13 19 19 C 1.50702 * 109.47115 * 179.97438 * 18 17 14 20 20 O 1.21292 * 120.00118 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99961 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00164 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99583 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00447 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00477 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99664 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47013 * 90.00682 * 26 24 22 28 28 H 1.48504 * 109.46892 * 210.00109 * 26 24 22 29 29 H 1.48498 * 109.47317 * 330.00353 * 26 24 22 30 30 H 1.09001 * 109.47071 * 300.00282 * 1 2 3 31 31 H 1.09000 * 109.47108 * 59.99937 * 1 2 3 32 32 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47071 * 239.99718 * 2 1 3 34 34 H 1.09000 * 109.47108 * 120.00063 * 2 1 3 35 35 H 1.09001 * 109.47281 * 59.99847 * 3 2 1 36 36 H 1.09000 * 109.47085 * 300.00077 * 3 2 1 37 37 H 1.08003 * 126.28898 * 180.24265 * 8 6 5 38 38 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 40 40 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 41 41 H 1.09002 * 109.47016 * 59.99741 * 16 14 13 42 42 H 1.09000 * 109.47400 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46881 * 300.00361 * 16 14 13 44 44 H 1.00897 * 110.99919 * 31.04201 * 17 14 13 45 45 H 1.09007 * 109.46974 * 299.99418 * 18 17 14 46 46 H 1.08997 * 109.47662 * 59.99422 * 18 17 14 47 47 H 0.97003 * 119.99961 * 359.97438 * 21 19 18 48 48 H 0.96996 * 120.00366 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4430 1.0545 6 7 5.6514 1.4433 0.6427 7 1 6.4247 1.4441 1.2282 8 6 5.6836 1.4373 -0.6995 9 6 4.3768 1.4423 -1.1442 10 6 3.9305 1.4413 -2.5494 11 8 2.7428 1.4403 -2.8100 12 7 4.8390 1.4413 -3.5449 13 6 4.3955 1.4408 -4.9412 14 6 5.6158 1.4416 -5.8639 15 1 6.1683 0.5106 -5.7365 16 6 5.1560 1.5668 -7.3178 17 7 6.4848 2.5767 -5.5257 18 6 7.8744 2.3124 -5.9220 19 6 8.7337 3.4965 -5.5606 20 8 8.2373 4.4654 -5.0258 21 7 10.0538 3.4787 -5.8315 22 6 10.8357 4.5557 -5.5021 23 1 10.3937 5.4184 -5.0260 24 6 12.1966 4.5377 -5.7819 25 7 12.9460 5.5701 -5.4667 26 14 12.9610 3.0457 -6.6061 27 1 12.9130 3.2159 -8.0806 28 1 14.3738 2.9085 -6.1695 29 1 12.2041 1.8267 -6.2236 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.5692 1.4323 -1.3176 38 1 5.7864 1.4423 -3.3370 39 1 3.7960 0.5506 -5.1317 40 1 3.7955 2.3306 -5.1322 41 1 4.6035 2.4977 -7.4452 42 1 6.0254 1.5668 -7.9752 43 1 4.5112 0.7245 -7.5687 44 1 6.4248 2.7978 -4.5431 45 1 8.2384 1.4265 -5.4016 46 1 7.9199 2.1459 -6.9983 47 1 10.4509 2.7037 -6.2588 48 1 13.8961 5.5574 -5.6617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690595748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:14 Heat of formation + Delta-G solvation = -7.836635 kcal Electronic energy + Delta-G solvation = -28797.592963 eV Core-core repulsion = 24695.780680 eV Total energy + Delta-G solvation = -4101.812283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69704 -39.49780 -38.57513 -37.04430 -35.44567 -34.18805 -33.79001 -31.84718 -31.77599 -31.33576 -30.33717 -27.38951 -26.89008 -26.12753 -23.86935 -23.14049 -22.14480 -20.78396 -20.55493 -19.81141 -19.47739 -18.81298 -18.34950 -16.81956 -16.31614 -16.03930 -15.55429 -15.48855 -15.27812 -15.20651 -14.85043 -14.64471 -14.29530 -14.14683 -13.89397 -13.52069 -13.26960 -13.18079 -12.92500 -12.71633 -12.57082 -12.25046 -12.18443 -12.08193 -11.86612 -11.73347 -11.61100 -11.45855 -11.26100 -11.21315 -10.96371 -10.78815 -10.66193 -10.04239 -9.94465 -9.77402 -9.64454 -9.29888 -8.98393 -8.66946 -8.29773 -8.24018 -6.37644 -3.89524 1.23779 1.92676 2.41261 2.95308 3.01147 3.06072 3.09580 3.31880 3.65262 3.95470 4.03930 4.18489 4.35876 4.57184 4.70617 4.80838 4.89891 4.94300 5.03203 5.08570 5.13923 5.14848 5.18656 5.32210 5.48569 5.49604 5.57408 5.61835 5.63564 5.70431 5.72487 5.78236 5.84740 5.85033 5.90022 6.08249 6.12869 6.17347 6.25184 6.32577 6.79710 6.98358 7.21225 7.39643 7.43304 7.51085 8.07341 8.15715 8.52426 8.88091 9.35207 9.74866 10.75311 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.002366 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.059875 B =11829.738418 C =13182.308619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.045 4.045 4 C 0.139 3.861 5 N -0.298 5.298 6 N -0.459 5.459 7 H 0.445 0.555 8 C 0.110 3.890 9 C -0.289 4.289 10 C 0.597 3.403 11 O -0.538 6.538 12 N -0.731 5.731 13 C 0.121 3.879 14 C 0.071 3.929 15 H 0.048 0.952 16 C -0.138 4.138 17 N -0.664 5.664 18 C 0.046 3.954 19 C 0.447 3.553 20 O -0.564 6.564 21 N -0.589 5.589 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.186 0.814 38 H 0.394 0.606 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.348 0.652 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 -15.999 6.549 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.029 4.029 5 N -0.120 5.120 6 N -0.163 5.163 7 H 0.290 0.710 8 C -0.044 4.044 9 C -0.304 4.304 10 C 0.385 3.615 11 O -0.415 6.415 12 N -0.384 5.384 13 C -0.003 4.003 14 C -0.039 4.039 15 H 0.066 0.934 16 C -0.197 4.197 17 N -0.299 5.299 18 C -0.086 4.086 19 C 0.233 3.767 20 O -0.445 6.445 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.707 3.293 27 H -0.195 1.195 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.203 0.797 38 H 0.229 0.771 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.170 0.830 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.558 -14.867 7.433 24.177 hybrid contribution 2.436 -1.685 -0.542 3.011 sum -15.121 -16.552 6.890 23.454 Atomic orbital electron populations 1.21738 0.95330 1.01601 1.02014 1.21359 0.95976 0.95443 1.02071 1.20232 0.85273 0.98652 1.04299 1.22459 0.97071 0.94787 0.88608 1.77178 0.86199 1.26212 1.22455 1.46128 1.07920 1.56712 1.05493 0.70965 1.23217 0.99069 0.96250 0.85864 1.20270 0.92089 1.23476 0.94575 1.17162 0.85499 0.75435 0.83385 1.90740 1.16095 1.50480 1.84234 1.45872 1.09504 1.76623 1.06413 1.21582 0.96496 1.03232 0.78953 1.21825 0.93127 0.92663 0.96277 0.93376 1.21738 1.01533 1.02255 0.94142 1.60093 1.06426 1.37788 1.25598 1.21797 0.88652 0.96275 1.01915 1.19703 0.82511 0.89344 0.85151 1.90581 1.72550 1.35319 1.46083 1.42211 1.07370 1.17806 1.55496 1.19425 0.89734 0.96553 1.37768 0.86275 1.25051 0.96021 0.97348 0.97753 1.69616 1.06602 1.29278 1.46457 0.86671 0.79868 0.82337 0.80463 1.19545 1.20189 1.19583 0.92803 0.92224 0.92786 0.91557 0.92350 0.90573 0.87951 0.79728 0.77130 0.90700 0.90159 0.91373 0.92095 0.92405 0.83031 0.93809 0.89228 0.79706 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.11 -1.04 5.92 -26.73 -0.16 -1.20 16 3 C -0.05 -0.48 5.25 -27.89 -0.15 -0.62 16 4 C 0.14 1.64 6.52 -82.02 -0.53 1.10 16 5 N -0.30 -3.43 12.63 33.90 0.43 -3.00 16 6 N -0.46 -3.92 7.29 30.85 0.22 -3.69 16 7 H 0.45 2.34 8.96 -182.72 -1.64 0.70 16 8 C 0.11 0.94 11.52 -16.57 -0.19 0.75 16 9 C -0.29 -3.25 6.13 -105.06 -0.64 -3.90 16 10 C 0.60 7.34 7.81 -12.52 -0.10 7.24 16 11 O -0.54 -7.95 14.92 5.28 0.08 -7.87 16 12 N -0.73 -7.52 4.98 -61.38 -0.31 -7.82 16 13 C 0.12 1.24 5.31 -4.04 -0.02 1.22 16 14 C 0.07 0.73 2.81 -67.71 -0.19 0.54 16 15 H 0.05 0.44 7.80 -51.93 -0.40 0.03 16 16 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 17 N -0.66 -9.17 5.92 -107.99 -0.64 -9.81 16 18 C 0.05 0.69 5.96 -4.98 -0.03 0.66 16 19 C 0.45 9.52 7.82 -10.99 -0.09 9.43 16 20 O -0.56 -14.44 15.78 5.55 0.09 -14.35 16 21 N -0.59 -13.31 5.09 -10.96 -0.06 -13.37 16 22 C -0.31 -8.36 10.16 -14.93 -0.15 -8.52 16 23 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.09 13.96 55.50 0.77 -24.32 16 26 Si 0.88 18.66 27.74 -169.99 -4.71 13.94 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 29 H -0.27 -5.14 6.52 56.52 0.37 -4.77 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.20 6.55 -51.93 -0.34 0.86 16 37 H 0.19 0.97 7.46 -52.48 -0.39 0.58 16 38 H 0.39 3.43 6.29 -40.82 -0.26 3.17 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.35 4.95 6.41 -39.29 -0.25 4.70 16 45 H 0.04 0.54 8.06 -51.92 -0.42 0.12 16 46 H 0.09 1.21 7.44 -51.93 -0.39 0.82 16 47 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 48 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -35.35 398.38 -8.24 -43.59 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -8.49 Total: 14.77 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.63 Total: 5.93 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.43 Total: -62.02 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.35 -8.24 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690595748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.758 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds