Wall clock time and date at job start Tue Mar 31 2020 19:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47314 * 2 1 4 4 C 1.50697 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.99187 * 269.95625 * 4 3 2 6 6 N 1.39931 * 108.89964 * 180.02562 * 5 4 3 7 7 H 0.97003 * 125.75293 * 179.97438 * 6 5 4 8 8 C 1.34254 * 108.49155 * 359.75152 * 6 5 4 9 9 C 1.38038 * 107.41955 * 0.39552 * 8 6 5 10 10 C 1.47433 * 126.41804 * 179.87069 * 9 8 6 11 11 O 1.21598 * 120.00022 * 179.68284 * 10 9 8 12 12 N 1.34771 * 119.99504 * 359.68944 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47196 * 64.99810 * 14 13 12 16 16 C 1.52997 * 109.47504 * 184.99959 * 14 13 12 17 17 N 1.46905 * 109.47150 * 305.00258 * 14 13 12 18 18 C 1.46896 * 111.00168 * 155.00133 * 17 14 13 19 19 C 1.50702 * 109.47115 * 179.97438 * 18 17 14 20 20 O 1.21292 * 120.00118 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99961 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00164 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99583 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00447 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00477 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99664 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47013 * 90.00682 * 26 24 22 28 28 H 1.48504 * 109.46892 * 210.00109 * 26 24 22 29 29 H 1.48498 * 109.47317 * 330.00353 * 26 24 22 30 30 H 1.09001 * 109.47071 * 300.00282 * 1 2 3 31 31 H 1.09000 * 109.47108 * 59.99937 * 1 2 3 32 32 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47071 * 239.99718 * 2 1 3 34 34 H 1.09000 * 109.47108 * 120.00063 * 2 1 3 35 35 H 1.09001 * 109.47281 * 59.99847 * 3 2 1 36 36 H 1.09000 * 109.47085 * 300.00077 * 3 2 1 37 37 H 1.08003 * 126.28898 * 180.24265 * 8 6 5 38 38 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 40 40 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 41 41 H 1.09002 * 109.47016 * 59.99741 * 16 14 13 42 42 H 1.09000 * 109.47400 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46881 * 300.00361 * 16 14 13 44 44 H 1.00897 * 110.99919 * 31.04201 * 17 14 13 45 45 H 1.09007 * 109.46974 * 299.99418 * 18 17 14 46 46 H 1.08997 * 109.47662 * 59.99422 * 18 17 14 47 47 H 0.97003 * 119.99961 * 359.97438 * 21 19 18 48 48 H 0.96996 * 120.00366 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4430 1.0545 6 7 5.6514 1.4433 0.6427 7 1 6.4247 1.4441 1.2282 8 6 5.6836 1.4373 -0.6995 9 6 4.3768 1.4423 -1.1442 10 6 3.9305 1.4413 -2.5494 11 8 2.7428 1.4403 -2.8100 12 7 4.8390 1.4413 -3.5449 13 6 4.3955 1.4408 -4.9412 14 6 5.6158 1.4416 -5.8639 15 1 6.1683 0.5106 -5.7365 16 6 5.1560 1.5668 -7.3178 17 7 6.4848 2.5767 -5.5257 18 6 7.8744 2.3124 -5.9220 19 6 8.7337 3.4965 -5.5606 20 8 8.2373 4.4654 -5.0258 21 7 10.0538 3.4787 -5.8315 22 6 10.8357 4.5557 -5.5021 23 1 10.3937 5.4184 -5.0260 24 6 12.1966 4.5377 -5.7819 25 7 12.9460 5.5701 -5.4667 26 14 12.9610 3.0457 -6.6061 27 1 12.9130 3.2159 -8.0806 28 1 14.3738 2.9085 -6.1695 29 1 12.2041 1.8267 -6.2236 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.5692 1.4323 -1.3176 38 1 5.7864 1.4423 -3.3370 39 1 3.7960 0.5506 -5.1317 40 1 3.7955 2.3306 -5.1322 41 1 4.6035 2.4977 -7.4452 42 1 6.0254 1.5668 -7.9752 43 1 4.5112 0.7245 -7.5687 44 1 6.4248 2.7978 -4.5431 45 1 8.2384 1.4265 -5.4016 46 1 7.9199 2.1459 -6.9983 47 1 10.4509 2.7037 -6.2588 48 1 13.8961 5.5574 -5.6617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690595748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:13 Heat of formation + Delta-G solvation = -37.028942 kcal Electronic energy + Delta-G solvation = -28798.858837 eV Core-core repulsion = 24695.780680 eV Total energy + Delta-G solvation = -4103.078157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48049 -40.54006 -40.08295 -38.12021 -36.23145 -35.97601 -34.87748 -33.72801 -32.60474 -32.34321 -31.17134 -28.26286 -28.11077 -27.13885 -25.46947 -23.95679 -22.88935 -21.63201 -21.40427 -21.26991 -20.63242 -20.27539 -19.48887 -17.91081 -17.47603 -17.01591 -16.87944 -16.58953 -16.44535 -16.08030 -16.04258 -15.55027 -15.39760 -15.22644 -14.98823 -14.85037 -14.41656 -14.28007 -14.14570 -13.94471 -13.60088 -13.48513 -13.29085 -12.96263 -12.90501 -12.76057 -12.51221 -12.46691 -12.38881 -12.17314 -12.01870 -11.96069 -11.81435 -11.57209 -11.49261 -10.87596 -10.56339 -10.40389 -10.22839 -10.19193 -9.77438 -9.32266 -8.39386 -6.00303 0.49724 1.06055 1.31297 1.37925 1.46292 1.75273 1.98558 2.22941 2.24802 2.43567 2.73209 3.17441 3.38404 3.42953 3.68224 3.76488 4.09166 4.12376 4.14424 4.20135 4.25667 4.33639 4.39857 4.41039 4.47255 4.58126 4.61332 4.70669 4.83421 4.87633 4.92508 4.98430 5.00900 5.10852 5.12500 5.33235 5.36993 5.41498 5.46092 5.53001 5.55218 5.93149 6.07567 6.20342 6.38744 6.41338 6.59583 6.61839 6.90849 7.27727 7.42666 7.99686 8.78141 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.002366 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.059875 B =11829.738418 C =13182.308619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.044 4.044 4 C 0.124 3.876 5 N -0.322 5.322 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.129 3.871 9 C -0.318 4.318 10 C 0.595 3.405 11 O -0.571 6.571 12 N -0.722 5.722 13 C 0.125 3.875 14 C 0.080 3.920 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.686 5.686 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.614 6.614 21 N -0.590 5.590 22 C -0.326 4.326 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.936 5.936 26 Si 0.965 3.035 27 H -0.260 1.260 28 H -0.278 1.278 29 H -0.226 1.226 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.222 0.778 38 H 0.404 0.596 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.344 0.656 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -19.815 5.458 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.083 4.083 4 C -0.043 4.043 5 N -0.145 5.145 6 N -0.153 5.153 7 H 0.308 0.692 8 C -0.025 4.025 9 C -0.333 4.333 10 C 0.383 3.617 11 O -0.452 6.452 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.029 4.029 15 H 0.094 0.906 16 C -0.197 4.197 17 N -0.321 5.321 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.499 6.499 21 N -0.232 5.232 22 C -0.455 4.455 23 H 0.072 0.928 24 C -0.216 4.216 25 N -0.577 5.577 26 Si 0.785 3.215 27 H -0.185 1.185 28 H -0.203 1.203 29 H -0.149 1.149 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.238 0.762 38 H 0.240 0.760 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.164 0.836 45 H 0.104 0.896 46 H 0.131 0.869 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.847 -18.713 6.349 25.967 hybrid contribution 2.154 -0.372 -0.142 2.190 sum -14.694 -19.085 6.207 24.873 Atomic orbital electron populations 1.21720 0.94140 1.02338 1.02171 1.21286 0.96966 0.94542 1.01329 1.20204 0.85187 0.99213 1.03710 1.22668 0.97621 0.94977 0.89070 1.77113 0.87436 1.27129 1.22797 1.46176 1.07607 1.55622 1.05944 0.69215 1.23691 0.99208 0.93693 0.85932 1.20336 0.93301 1.25653 0.94028 1.17355 0.85268 0.74954 0.84092 1.90718 1.17487 1.52210 1.84757 1.45765 1.09749 1.75796 1.06105 1.21544 0.96642 1.02734 0.78964 1.21852 0.92341 0.92384 0.96306 0.90629 1.21762 1.01831 1.02424 0.93670 1.60079 1.06417 1.40144 1.25495 1.21732 0.87822 0.93838 1.03761 1.21027 0.82358 0.90421 0.82575 1.90566 1.73515 1.38021 1.47758 1.42026 1.07682 1.17222 1.56285 1.18983 0.90913 0.96736 1.38900 0.92759 1.26133 0.95940 1.01527 0.97967 1.69808 1.07226 1.32475 1.48158 0.85368 0.78586 0.78478 0.79091 1.18492 1.20340 1.14879 0.91819 0.92882 0.91743 0.93062 0.92131 0.89934 0.89594 0.76204 0.75999 0.89629 0.92310 0.93103 0.91902 0.90127 0.83570 0.89588 0.86851 0.77438 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.55 16 2 C -0.10 -1.96 5.92 30.59 0.18 -1.78 16 3 C -0.04 -0.95 5.25 29.85 0.16 -0.80 16 4 C 0.12 2.94 6.52 43.52 0.28 3.22 16 5 N -0.32 -7.25 12.63 -46.67 -0.59 -7.84 16 6 N -0.45 -6.95 7.29 -56.32 -0.41 -7.36 16 7 H 0.46 3.95 8.96 -213.42 -1.91 2.03 16 8 C 0.13 1.96 11.52 84.28 0.97 2.93 16 9 C -0.32 -6.98 6.13 -20.15 -0.12 -7.10 16 10 C 0.59 14.40 7.81 86.67 0.68 15.08 16 11 O -0.57 -17.27 14.92 -4.02 -0.06 -17.33 16 12 N -0.72 -13.65 4.98 -466.37 -2.32 -15.97 16 13 C 0.12 2.35 5.31 86.38 0.46 2.81 16 14 C 0.08 1.37 2.81 44.91 0.13 1.49 16 15 H 0.08 0.95 7.80 -2.39 -0.02 0.93 16 16 C -0.14 -2.23 9.41 71.98 0.68 -1.56 16 17 N -0.69 -17.15 5.92 -495.57 -2.94 -20.09 16 18 C 0.06 1.55 5.96 85.56 0.51 2.06 16 19 C 0.45 18.48 7.82 87.66 0.69 19.17 16 20 O -0.61 -32.10 15.78 -3.07 -0.05 -32.15 16 21 N -0.59 -25.82 5.09 -306.99 -1.56 -27.39 16 22 C -0.33 -18.30 10.16 84.04 0.85 -17.45 16 23 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 24 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 25 N -0.94 -55.12 13.96 21.66 0.30 -54.82 16 26 Si 0.96 36.82 27.74 68.60 1.90 38.72 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 28 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 29 H -0.23 -6.94 6.52 99.48 0.65 -6.29 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 2.14 6.55 -2.39 -0.02 2.13 16 37 H 0.22 1.55 7.46 -2.91 -0.02 1.53 16 38 H 0.40 5.95 6.29 -92.71 -0.58 5.37 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.00 7.45 -2.39 -0.02 0.99 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.34 9.11 6.41 -89.70 -0.58 8.54 16 45 H 0.09 1.57 8.06 -2.38 -0.02 1.55 16 46 H 0.11 2.47 7.44 -2.39 -0.02 2.45 16 47 H 0.39 13.83 5.76 -92.71 -0.53 13.30 16 48 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -83.82 398.38 -1.73 -85.55 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -2.64 Total: 42.61 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.64 Total: 16.07 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -7.52 Total: -133.47 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.11 Total: -49.48 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 1.90 Total: 38.72 kcal Total: -83.82 -1.73 -85.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690595748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.519 kcal (2) G-P(sol) polarization free energy of solvation -83.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds