Wall clock time and date at job start Tue Mar 31 2020 20:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 H 1.08999 * 109.47374 * 55.37367 * 3 2 1 5 5 C 1.53004 * 109.47015 * 175.37783 * 3 2 1 6 6 N 1.46507 * 109.47195 * 174.99948 * 5 3 2 7 7 C 1.34771 * 120.00099 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99795 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00347 * 179.97438 * 7 6 5 10 10 H 1.09004 * 109.46769 * 59.99377 * 9 7 6 11 11 C 1.52996 * 109.47207 * 300.00173 * 9 7 6 12 12 N 1.46493 * 109.47442 * 179.97438 * 9 7 6 13 13 C 1.34950 * 126.03441 * 85.00495 * 12 9 7 14 14 C 1.35324 * 107.74232 * 179.97438 * 13 12 9 15 15 C 1.39869 * 107.92187 * 359.97438 * 14 13 12 16 16 N 1.30837 * 108.19958 * 359.74370 * 15 14 13 17 17 N 1.46899 * 109.47332 * 295.37109 * 3 2 1 18 18 C 1.46900 * 111.00002 * 302.89206 * 17 3 2 19 19 C 1.50707 * 109.47255 * 185.63214 * 18 17 3 20 20 O 1.21289 * 119.99739 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00054 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99938 * 179.97438 * 21 19 18 23 23 H 1.07996 * 119.99791 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99893 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99825 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00151 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47351 * 89.99327 * 26 24 22 28 28 H 1.48497 * 109.47041 * 209.99671 * 26 24 22 29 29 H 1.48502 * 109.46925 * 329.99175 * 26 24 22 30 30 H 1.08997 * 109.47211 * 178.73020 * 1 2 3 31 31 H 1.09003 * 109.47612 * 298.73744 * 1 2 3 32 32 H 1.09001 * 109.47372 * 58.73280 * 1 2 3 33 33 H 1.08998 * 109.47314 * 239.99686 * 2 1 3 34 34 H 1.09004 * 109.46712 * 119.99536 * 2 1 3 35 35 H 1.08998 * 109.46896 * 294.99515 * 5 3 2 36 36 H 1.08991 * 109.47492 * 54.99437 * 5 3 2 37 37 H 0.97002 * 119.99730 * 359.97438 * 6 5 3 38 38 H 1.09000 * 109.46897 * 299.99715 * 11 9 7 39 39 H 1.09001 * 109.47314 * 59.99056 * 11 9 7 40 40 H 1.09000 * 109.47673 * 179.97438 * 11 9 7 41 41 H 1.07992 * 126.12600 * 359.97438 * 13 12 9 42 42 H 1.08001 * 126.03364 * 180.02562 * 14 13 12 43 43 H 1.07997 * 125.89886 * 180.02562 * 15 14 13 44 44 H 1.00906 * 110.99665 * 66.84111 * 17 3 2 45 45 H 1.08995 * 109.47426 * 305.63317 * 18 17 3 46 46 H 1.09002 * 109.47278 * 65.63690 * 18 17 3 47 47 H 0.97001 * 119.99934 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00152 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6105 1.9797 0.8456 5 6 3.5655 1.4441 0.1162 6 7 4.0630 2.8169 -0.0036 7 6 5.3861 3.0629 0.0696 8 8 6.1648 2.1480 0.2352 9 6 5.8979 4.4749 -0.0543 10 1 5.4718 5.0868 0.7408 11 6 5.4900 5.0479 -1.4130 12 7 7.3585 4.4765 0.0584 13 6 8.2325 4.2584 -0.9465 14 6 9.4814 4.3457 -0.4330 15 6 9.3668 4.6273 0.9323 16 7 8.0948 4.7117 1.2267 17 7 1.6436 2.1020 -1.2514 18 6 2.1483 1.3650 -2.4176 19 6 1.8429 2.1409 -3.6730 20 8 1.2616 3.2032 -3.6030 21 7 2.2158 1.6546 -4.8733 22 6 1.9375 2.3602 -6.0153 23 1 1.4199 3.3060 -5.9530 24 6 2.3224 1.8590 -7.2528 25 7 2.0561 2.5357 -8.3474 26 14 3.2182 0.2234 -7.3605 27 1 2.2286 -0.8747 -7.5013 28 1 4.1211 0.2303 -8.5394 29 1 4.0173 0.0146 -6.1263 30 1 -0.3633 -1.0274 -0.0228 31 1 -0.3634 0.4941 0.9011 32 1 -0.3634 0.5334 -0.8784 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.8566 1.0354 1.0839 36 1 3.9912 0.8326 -0.6792 37 1 3.4401 3.5486 -0.1357 38 1 5.9161 4.4359 -2.2080 39 1 4.4032 5.0466 -1.4964 40 1 5.8598 6.0693 -1.5025 41 1 7.9803 4.0514 -1.9759 42 1 10.4038 4.2208 -0.9808 43 1 10.1867 4.7575 1.6230 44 1 0.6419 2.2135 -1.2999 45 1 3.2263 1.2329 -2.3254 46 1 1.6656 0.3890 -2.4674 47 1 2.6803 0.8049 -4.9292 48 1 2.3244 2.1857 -9.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698590321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:15 Heat of formation + Delta-G solvation = 15.693196 kcal Electronic energy + Delta-G solvation = -29754.220758 eV Core-core repulsion = 25653.428805 eV Total energy + Delta-G solvation = -4100.791953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36507 -39.87721 -38.82206 -37.50561 -34.74329 -34.26816 -33.98195 -31.97221 -31.64940 -30.20784 -29.79584 -28.64959 -26.86079 -25.09872 -24.14624 -23.44491 -21.40972 -21.09618 -20.54573 -19.77920 -19.35226 -18.51106 -17.73961 -17.21430 -16.86538 -15.91248 -15.72471 -15.48411 -15.10378 -14.72244 -14.70541 -14.43474 -14.17126 -14.03226 -13.82474 -13.61825 -13.45951 -13.22116 -12.86762 -12.76568 -12.61058 -12.58237 -12.52788 -12.32683 -11.95005 -11.92483 -11.79636 -11.53165 -11.24672 -11.03506 -10.94886 -10.75475 -10.64394 -10.18162 -10.03500 -9.62903 -9.41970 -9.16809 -8.72227 -8.62341 -8.29044 -8.23019 -6.36980 -3.88625 1.79252 2.25094 2.43209 2.84474 2.98430 3.02276 3.10765 3.11670 3.67022 3.98434 4.05479 4.27917 4.44832 4.47697 4.59395 4.71786 4.79646 4.81561 4.89840 4.92126 5.10230 5.16020 5.25901 5.31114 5.37635 5.41163 5.44880 5.50770 5.57113 5.63332 5.70381 5.72856 5.74432 5.85561 5.86282 5.94465 5.98346 6.04747 6.27971 6.59266 6.88597 6.91883 7.36973 7.41006 7.51832 7.65688 8.05170 8.08012 8.53334 8.88862 9.36418 9.76009 10.75971 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008560 B = 0.003497 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.378234 B = 8004.421439 C =10200.997627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.092 0.908 5 C 0.128 3.872 6 N -0.707 5.707 7 C 0.500 3.500 8 O -0.530 6.530 9 C 0.145 3.855 10 H 0.126 0.874 11 C -0.163 4.163 12 N -0.353 5.353 13 C 0.072 3.928 14 C -0.278 4.278 15 C 0.045 3.955 16 N -0.296 5.296 17 N -0.658 5.658 18 C 0.040 3.960 19 C 0.451 3.549 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.043 3.957 25 N -0.880 5.880 26 Si 0.877 3.123 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.171 0.829 42 H 0.146 0.854 43 H 0.181 0.819 44 H 0.355 0.645 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -1.469 18.046 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.110 0.890 5 C 0.004 3.996 6 N -0.360 5.360 7 C 0.284 3.716 8 O -0.406 6.406 9 C 0.038 3.962 10 H 0.144 0.856 11 C -0.221 4.221 12 N -0.135 5.135 13 C -0.074 4.074 14 C -0.307 4.307 15 C -0.141 4.141 16 N -0.116 5.116 17 N -0.291 5.291 18 C -0.093 4.093 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.160 4.160 25 N -0.520 5.520 26 Si 0.704 3.296 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.249 0.751 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.188 0.812 42 H 0.164 0.836 43 H 0.198 0.802 44 H 0.176 0.824 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.796 -0.727 18.880 19.763 hybrid contribution 0.489 -2.099 -1.131 2.434 sum 6.284 -2.826 17.749 19.040 Atomic orbital electron populations 1.21761 0.95104 1.02099 1.02130 1.22208 0.96893 0.97819 1.03091 1.21929 0.94093 0.93716 0.94029 0.88977 1.21422 0.92989 0.83352 1.01876 1.45732 1.06646 1.10466 1.73141 1.20693 0.82925 0.90857 0.77157 1.90753 1.55883 1.45733 1.48269 1.21098 0.77105 0.95442 1.02525 0.85591 1.22197 1.04378 1.02309 0.93235 1.48194 1.04738 1.54385 1.06198 1.22481 0.89908 0.99770 0.95234 1.21453 0.97463 1.16538 0.95262 1.23828 0.94323 0.99850 0.96123 1.77305 1.04630 1.23767 1.05933 1.60196 1.19752 1.49726 0.99444 1.21809 1.01241 0.95477 0.90755 1.19670 0.84988 0.87906 0.83811 1.90558 1.44679 1.23216 1.86216 1.42223 1.53145 1.21174 1.06409 1.19409 1.36028 1.06010 0.81970 0.86267 1.25032 0.97774 0.98114 0.95121 1.69617 1.46146 1.38228 0.97989 0.86705 0.80281 0.84072 0.78545 1.19630 1.20095 1.19521 0.92431 0.92446 0.92386 0.91099 0.91236 0.91172 0.91382 0.75085 0.90717 0.88407 0.90156 0.81203 0.83594 0.80170 0.82443 0.89519 0.93256 0.79779 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.70 37.15 0.36 -0.90 16 2 C -0.16 -1.35 5.10 -26.73 -0.14 -1.49 16 3 C 0.07 0.67 2.70 -67.71 -0.18 0.49 16 4 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 5 C 0.13 1.35 4.76 -4.04 -0.02 1.33 16 6 N -0.71 -7.71 5.28 -60.29 -0.32 -8.02 16 7 C 0.50 6.54 7.22 -10.99 -0.08 6.46 16 8 O -0.53 -9.10 16.42 5.55 0.09 -9.01 16 9 C 0.14 1.61 3.73 -69.09 -0.26 1.35 16 10 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 11 C -0.16 -1.57 8.73 37.16 0.32 -1.25 16 12 N -0.35 -4.65 3.02 -56.00 -0.17 -4.82 16 13 C 0.07 0.88 10.58 -17.22 -0.18 0.70 16 14 C -0.28 -3.18 10.80 -40.01 -0.43 -3.61 16 15 C 0.05 0.53 12.03 -17.37 -0.21 0.33 16 16 N -0.30 -4.19 12.58 30.62 0.39 -3.80 16 17 N -0.66 -8.05 5.32 -107.99 -0.57 -8.62 16 18 C 0.04 0.58 5.31 -4.97 -0.03 0.56 16 19 C 0.45 9.41 7.83 -10.98 -0.09 9.32 16 20 O -0.56 -13.90 15.90 5.55 0.09 -13.81 16 21 N -0.59 -13.38 5.09 -10.96 -0.06 -13.44 16 22 C -0.31 -8.32 10.16 -14.93 -0.15 -8.48 16 23 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.12 13.96 55.50 0.77 -24.35 16 26 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 27 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.54 6.87 -51.93 -0.36 0.19 16 33 H 0.07 0.66 6.23 -51.93 -0.32 0.34 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.82 6.61 -51.93 -0.34 0.48 16 37 H 0.41 4.02 7.56 -40.82 -0.31 3.71 16 38 H 0.07 0.79 7.16 -51.93 -0.37 0.42 16 39 H 0.10 0.91 7.56 -51.93 -0.39 0.52 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.17 1.74 7.26 -52.49 -0.38 1.36 16 42 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.35 4.52 7.29 -39.29 -0.29 4.23 16 45 H 0.09 1.23 6.22 -51.93 -0.32 0.91 16 46 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 47 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 48 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -35.36 393.99 -6.75 -42.11 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -7.02 Total: 17.69 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.17 Total: 5.86 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.04 Total: -63.06 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.36 -6.75 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698590321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.807 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds