Wall clock time and date at job start Tue Mar 31 2020 20:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46898 * 55.00725 * 3 2 1 5 5 C 1.53005 * 109.46748 * 174.99700 * 3 2 1 6 6 N 1.46505 * 109.46904 * 175.00140 * 5 3 2 7 7 C 1.34773 * 120.00095 * 180.02562 * 6 5 3 8 8 O 1.21603 * 119.99887 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.00175 * 179.72702 * 7 6 5 10 10 C 1.36596 * 125.77041 * 179.97438 * 9 7 6 11 11 N 1.34816 * 106.83598 * 179.83903 * 10 9 7 12 12 C 1.46502 * 126.59239 * 180.15057 * 11 10 9 13 13 C 1.53001 * 109.47403 * 125.28214 * 12 11 10 14 14 H 1.08998 * 110.45169 * 52.39443 * 13 12 11 15 15 C 1.54509 * 110.51198 * 175.00047 * 13 12 11 16 16 C 1.54477 * 104.06126 * 118.64876 * 15 13 12 17 17 O 1.44418 * 104.80495 * 23.97627 * 16 15 13 18 18 C 1.44419 * 105.27590 * 319.48936 * 17 16 15 19 19 N 1.40204 * 106.81508 * 0.40840 * 11 10 9 20 20 N 1.28764 * 108.36495 * 359.73750 * 19 11 10 21 21 N 1.46500 * 109.47415 * 295.00122 * 3 2 1 22 22 C 1.36935 * 119.99823 * 85.00116 * 21 3 2 23 23 H 1.08002 * 120.00075 * 0.02562 * 22 21 3 24 24 C 1.38813 * 119.99657 * 180.02562 * 22 21 3 25 25 N 1.31616 * 120.00363 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47237 * 89.99749 * 26 24 22 28 28 H 1.48491 * 109.47067 * 210.00204 * 26 24 22 29 29 H 1.48506 * 109.46934 * 329.99790 * 26 24 22 30 30 H 1.09001 * 109.47222 * 59.99591 * 1 2 3 31 31 H 1.08996 * 109.47572 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46863 * 300.00226 * 1 2 3 33 33 H 1.08998 * 109.47032 * 240.00492 * 2 1 3 34 34 H 1.08994 * 109.46999 * 120.00082 * 2 1 3 35 35 H 1.09003 * 109.46946 * 55.00899 * 5 3 2 36 36 H 1.08993 * 109.47679 * 295.00442 * 5 3 2 37 37 H 0.97000 * 119.99792 * 0.02562 * 6 5 3 38 38 H 1.08003 * 126.57934 * 359.97438 * 10 9 7 39 39 H 1.09001 * 109.46894 * 245.28796 * 12 11 10 40 40 H 1.09006 * 109.47251 * 5.28250 * 12 11 10 41 41 H 1.09008 * 110.50895 * 237.29495 * 15 13 12 42 42 H 1.09006 * 110.51027 * 359.97438 * 15 13 12 43 43 H 1.08999 * 110.36831 * 142.81072 * 16 15 13 44 44 H 1.08997 * 110.36919 * 265.14344 * 16 15 13 45 45 H 1.09004 * 110.37129 * 281.68055 * 18 17 16 46 46 H 1.09000 * 110.37280 * 159.34399 * 18 17 16 47 47 H 0.96996 * 119.99542 * 264.99808 * 21 3 2 48 48 H 0.96999 * 120.00252 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0630 0.0860 8 8 6.1655 2.1459 0.2579 9 6 5.8880 4.4443 -0.0406 10 6 7.1978 4.8265 0.0222 11 7 7.2225 6.1643 -0.1427 12 6 8.4107 7.0213 -0.1525 13 6 8.4368 7.8423 -1.4433 14 1 7.4906 8.3654 -1.5812 15 6 9.6120 8.8452 -1.4234 16 6 10.4847 8.4247 -2.6267 17 8 9.5797 7.7344 -3.5156 18 6 8.7386 6.9345 -2.6562 19 7 5.8920 6.5786 -0.2969 20 7 5.1336 5.5401 -0.2316 21 7 1.6524 2.0976 -1.2518 22 6 0.4156 2.6736 -1.3687 23 1 -0.2740 2.6453 -0.5379 24 6 0.0482 3.2938 -2.5550 25 7 0.8887 3.3287 -3.5672 26 14 -1.6387 4.0802 -2.7143 27 1 -1.5657 5.4997 -2.2843 28 1 -2.0841 4.0138 -4.1293 29 1 -2.6073 3.3521 -1.8558 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9954 0.8312 -0.6659 36 1 3.8499 1.0377 1.0960 37 1 3.4410 3.5484 -0.1307 38 1 8.0503 4.1806 0.1726 39 1 8.3811 7.6934 0.7051 40 1 9.3060 6.4018 -0.0978 41 1 9.2469 9.8640 -1.5538 42 1 10.1742 8.7564 -0.4937 43 1 10.9025 9.3035 -3.1179 44 1 11.2816 7.7557 -2.3020 45 1 9.2678 6.0369 -2.3361 46 1 7.8150 6.6685 -3.1702 47 1 2.2719 2.1233 -1.9977 48 1 0.6321 3.7624 -4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698616650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:11 Heat of formation + Delta-G solvation = 19.823060 kcal Electronic energy + Delta-G solvation = -29024.026929 eV Core-core repulsion = 24923.414060 eV Total energy + Delta-G solvation = -4100.612869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24891 -39.93271 -39.04390 -36.62518 -35.56337 -33.67255 -32.60922 -32.28334 -30.96578 -29.88773 -29.62032 -27.91949 -26.78113 -24.22427 -23.56608 -23.14227 -22.33247 -22.00896 -21.06393 -20.10281 -19.71559 -18.20373 -17.25712 -16.88198 -16.51616 -16.01603 -15.94087 -15.71871 -15.54403 -15.20535 -14.67122 -14.62529 -14.15818 -13.89234 -13.79725 -13.49643 -13.20551 -13.08705 -12.92088 -12.59627 -12.36579 -12.14486 -12.08568 -11.91488 -11.66668 -11.39617 -11.30954 -11.09557 -10.90674 -10.80683 -10.69861 -10.43748 -10.39295 -10.25727 -10.13756 -9.98210 -9.81592 -9.46765 -9.30785 -8.88158 -8.57549 -6.95555 -5.73150 -3.02174 1.07790 1.84251 1.85394 3.41937 3.46314 3.49062 3.51949 3.53413 3.56580 3.84063 3.96250 4.23147 4.26147 4.36381 4.51439 4.61615 4.68690 4.76770 4.79084 4.82592 5.00655 5.10467 5.22433 5.30378 5.35982 5.43673 5.45520 5.51118 5.59006 5.62420 5.81669 5.98014 6.01094 6.01573 6.19618 6.21714 6.30566 6.47841 6.58938 6.63002 6.64683 6.91641 7.07207 7.29804 7.74054 7.82108 8.09567 8.43672 8.53395 9.55880 10.10626 10.46297 11.48760 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.002592 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.456396 B =10798.515767 C =12311.198515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.693 5.693 7 C 0.599 3.401 8 O -0.556 6.556 9 C -0.092 4.092 10 C 0.086 3.914 11 N -0.368 5.368 12 C 0.133 3.867 13 C -0.139 4.139 14 H 0.106 0.894 15 C -0.146 4.146 16 C 0.042 3.958 17 O -0.370 6.370 18 C 0.049 3.951 19 N -0.063 5.063 20 N -0.190 5.190 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.203 0.797 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.385 0.615 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.620 7.609 8.609 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.343 5.343 7 C 0.382 3.618 8 O -0.434 6.434 9 C -0.231 4.231 10 C -0.070 4.070 11 N -0.153 5.153 12 C 0.011 3.989 13 C -0.158 4.158 14 H 0.124 0.876 15 C -0.185 4.185 16 C -0.035 4.035 17 O -0.288 6.288 18 C -0.028 4.028 19 N -0.043 5.043 20 N -0.064 5.064 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.208 1.208 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.219 0.781 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.052 8.252 8.288 23.214 hybrid contribution -0.262 0.028 -0.105 0.284 sum 19.790 8.280 8.183 22.960 Atomic orbital electron populations 1.21771 0.95734 0.99565 1.03313 1.22068 0.96973 0.98370 0.99986 1.20570 0.89791 0.92861 0.91578 0.92783 1.21745 0.95844 0.82158 1.01245 1.45812 1.06685 1.11306 1.70541 1.16757 0.82948 0.85058 0.77023 1.90765 1.56451 1.44338 1.51890 1.21578 0.90558 0.95128 1.15866 1.23318 1.00113 0.84984 0.98585 1.50519 1.09156 1.06123 1.49471 1.22097 0.83624 0.93514 0.99619 1.22928 1.01902 0.96911 0.94068 0.87617 1.22956 0.95789 0.99976 0.99739 1.23453 0.92661 0.97035 0.90344 1.89195 1.48562 1.61200 1.29878 1.23519 0.95509 0.93279 0.90472 1.82027 0.82535 1.17477 1.22303 1.74780 1.26198 0.96505 1.08910 1.42434 1.16815 1.65798 1.11209 1.19177 0.91850 1.27836 0.97884 0.90937 1.24719 0.97988 1.01493 0.96432 1.69657 1.35145 1.48819 1.03958 0.86275 0.84191 0.79458 0.76766 1.21724 1.21958 1.20820 0.89608 0.94937 0.94135 0.92507 0.93864 0.91553 0.91612 0.74291 0.78073 0.87955 0.87598 0.89655 0.89881 0.88775 0.92057 0.92034 0.88578 0.78075 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.07 2.59 -67.93 -0.18 2.90 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.98 5.23 -4.04 -0.02 1.96 16 6 N -0.69 -12.45 5.38 -61.35 -0.33 -12.78 16 7 C 0.60 10.40 7.82 -12.48 -0.10 10.31 16 8 O -0.56 -10.38 16.86 5.27 0.09 -10.30 16 9 C -0.09 -1.42 6.99 -83.55 -0.58 -2.00 16 10 C 0.09 0.96 11.27 -16.83 -0.19 0.77 16 11 N -0.37 -3.75 3.58 -61.06 -0.22 -3.97 16 12 C 0.13 0.74 5.69 -4.04 -0.02 0.72 16 13 C -0.14 -0.93 3.24 -89.05 -0.29 -1.21 16 14 H 0.11 0.91 8.06 -51.93 -0.42 0.49 16 15 C -0.15 -0.65 6.74 -25.16 -0.17 -0.82 16 16 C 0.04 0.24 7.63 37.93 0.29 0.53 16 17 O -0.37 -3.68 11.65 -35.23 -0.41 -4.09 16 18 C 0.05 0.43 7.08 37.93 0.27 0.69 16 19 N -0.06 -0.92 13.58 60.35 0.82 -0.10 16 20 N -0.19 -3.21 12.04 32.85 0.40 -2.82 16 21 N -0.72 -16.91 4.51 -53.42 -0.24 -17.15 16 22 C -0.24 -6.17 7.75 -15.06 -0.12 -6.29 16 23 H 0.07 1.85 7.33 -52.49 -0.38 1.46 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 26 Si 0.90 22.17 29.55 -169.99 -5.02 17.15 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.09 1.84 5.99 -51.93 -0.31 1.53 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.42 8.12 7.82 -40.82 -0.32 7.80 16 38 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.29 7.90 -51.93 -0.41 -0.12 16 41 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.08 0.18 7.73 -51.93 -0.40 -0.22 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.45 7.74 -51.93 -0.40 0.05 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -33.28 398.25 -6.80 -40.08 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.59 Total: 12.36 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.01 Total: 2.41 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 1.15 Total: -63.62 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.32 Total: -14.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.28 -6.80 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698616650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.905 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds