Wall clock time and date at job start Tue Mar 31 2020 20:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46898 * 55.00725 * 3 2 1 5 5 C 1.53005 * 109.46748 * 174.99700 * 3 2 1 6 6 N 1.46505 * 109.46904 * 175.00140 * 5 3 2 7 7 C 1.34773 * 120.00095 * 180.02562 * 6 5 3 8 8 O 1.21603 * 119.99887 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.00175 * 179.72702 * 7 6 5 10 10 C 1.36596 * 125.77041 * 179.97438 * 9 7 6 11 11 N 1.34816 * 106.83598 * 179.83903 * 10 9 7 12 12 C 1.46502 * 126.59239 * 180.15057 * 11 10 9 13 13 C 1.53001 * 109.47403 * 125.28214 * 12 11 10 14 14 H 1.08998 * 110.45169 * 52.39443 * 13 12 11 15 15 C 1.54509 * 110.51198 * 175.00047 * 13 12 11 16 16 C 1.54477 * 104.06126 * 118.64876 * 15 13 12 17 17 O 1.44418 * 104.80495 * 23.97627 * 16 15 13 18 18 C 1.44419 * 105.27590 * 319.48936 * 17 16 15 19 19 N 1.40204 * 106.81508 * 0.40840 * 11 10 9 20 20 N 1.28764 * 108.36495 * 359.73750 * 19 11 10 21 21 N 1.46500 * 109.47415 * 295.00122 * 3 2 1 22 22 C 1.36935 * 119.99823 * 85.00116 * 21 3 2 23 23 H 1.08002 * 120.00075 * 0.02562 * 22 21 3 24 24 C 1.38813 * 119.99657 * 180.02562 * 22 21 3 25 25 N 1.31616 * 120.00363 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47237 * 89.99749 * 26 24 22 28 28 H 1.48491 * 109.47067 * 210.00204 * 26 24 22 29 29 H 1.48506 * 109.46934 * 329.99790 * 26 24 22 30 30 H 1.09001 * 109.47222 * 59.99591 * 1 2 3 31 31 H 1.08996 * 109.47572 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46863 * 300.00226 * 1 2 3 33 33 H 1.08998 * 109.47032 * 240.00492 * 2 1 3 34 34 H 1.08994 * 109.46999 * 120.00082 * 2 1 3 35 35 H 1.09003 * 109.46946 * 55.00899 * 5 3 2 36 36 H 1.08993 * 109.47679 * 295.00442 * 5 3 2 37 37 H 0.97000 * 119.99792 * 0.02562 * 6 5 3 38 38 H 1.08003 * 126.57934 * 359.97438 * 10 9 7 39 39 H 1.09001 * 109.46894 * 245.28796 * 12 11 10 40 40 H 1.09006 * 109.47251 * 5.28250 * 12 11 10 41 41 H 1.09008 * 110.50895 * 237.29495 * 15 13 12 42 42 H 1.09006 * 110.51027 * 359.97438 * 15 13 12 43 43 H 1.08999 * 110.36831 * 142.81072 * 16 15 13 44 44 H 1.08997 * 110.36919 * 265.14344 * 16 15 13 45 45 H 1.09004 * 110.37129 * 281.68055 * 18 17 16 46 46 H 1.09000 * 110.37280 * 159.34399 * 18 17 16 47 47 H 0.96996 * 119.99542 * 264.99808 * 21 3 2 48 48 H 0.96999 * 120.00252 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0630 0.0860 8 8 6.1655 2.1459 0.2579 9 6 5.8880 4.4443 -0.0406 10 6 7.1978 4.8265 0.0222 11 7 7.2225 6.1643 -0.1427 12 6 8.4107 7.0213 -0.1525 13 6 8.4368 7.8423 -1.4433 14 1 7.4906 8.3654 -1.5812 15 6 9.6120 8.8452 -1.4234 16 6 10.4847 8.4247 -2.6267 17 8 9.5797 7.7344 -3.5156 18 6 8.7386 6.9345 -2.6562 19 7 5.8920 6.5786 -0.2969 20 7 5.1336 5.5401 -0.2316 21 7 1.6524 2.0976 -1.2518 22 6 0.4156 2.6736 -1.3687 23 1 -0.2740 2.6453 -0.5379 24 6 0.0482 3.2938 -2.5550 25 7 0.8887 3.3287 -3.5672 26 14 -1.6387 4.0802 -2.7143 27 1 -1.5657 5.4997 -2.2843 28 1 -2.0841 4.0138 -4.1293 29 1 -2.6073 3.3521 -1.8558 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9954 0.8312 -0.6659 36 1 3.8499 1.0377 1.0960 37 1 3.4410 3.5484 -0.1307 38 1 8.0503 4.1806 0.1726 39 1 8.3811 7.6934 0.7051 40 1 9.3060 6.4018 -0.0978 41 1 9.2469 9.8640 -1.5538 42 1 10.1742 8.7564 -0.4937 43 1 10.9025 9.3035 -3.1179 44 1 11.2816 7.7557 -2.3020 45 1 9.2678 6.0369 -2.3361 46 1 7.8150 6.6685 -3.1702 47 1 2.2719 2.1233 -1.9977 48 1 0.6321 3.7624 -4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698616650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:10 Heat of formation + Delta-G solvation = -5.741442 kcal Electronic energy + Delta-G solvation = -29025.135489 eV Core-core repulsion = 24923.414060 eV Total energy + Delta-G solvation = -4101.721429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24144 -40.59611 -40.31902 -38.22087 -36.32302 -35.21439 -34.11781 -33.32394 -32.01362 -31.45275 -30.41327 -29.39158 -27.53176 -25.82571 -24.79303 -24.16652 -23.39480 -23.00446 -21.82659 -21.53690 -20.87878 -19.42668 -18.91408 -17.74176 -17.32530 -17.07958 -17.02506 -16.74940 -16.49543 -16.32119 -16.00559 -15.64128 -15.52937 -15.32493 -14.92229 -14.77219 -14.50211 -14.11947 -14.02329 -13.73923 -13.70099 -13.08404 -12.98200 -12.94896 -12.78391 -12.73290 -12.42957 -12.36721 -12.30497 -12.14331 -12.09595 -11.84667 -11.61506 -11.59285 -11.31568 -11.27065 -11.19325 -10.86060 -10.83803 -10.39120 -9.94382 -8.94656 -7.85527 -5.11974 0.16246 0.65163 1.10407 1.49402 1.50698 1.57600 2.20793 2.31363 2.61221 2.90555 3.21564 3.27435 3.47271 3.49687 3.74210 3.75372 3.92017 3.94457 3.98022 3.99697 4.07117 4.19193 4.30617 4.38503 4.42253 4.50592 4.52382 4.60834 4.66760 4.67765 4.78869 4.82575 4.89505 4.90805 5.01384 5.11777 5.13125 5.16653 5.23630 5.47006 5.47927 5.59841 5.63038 5.76213 5.77986 6.34549 6.49457 6.93665 7.17030 7.42336 8.15248 8.39105 9.37594 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.002592 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.456396 B =10798.515767 C =12311.198515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.162 3.838 4 H 0.056 0.944 5 C 0.122 3.878 6 N -0.701 5.701 7 C 0.600 3.400 8 O -0.572 6.572 9 C -0.127 4.127 10 C 0.114 3.886 11 N -0.348 5.348 12 C 0.123 3.877 13 C -0.134 4.134 14 H 0.078 0.922 15 C -0.135 4.135 16 C 0.034 3.966 17 O -0.406 6.406 18 C 0.045 3.955 19 N -0.089 5.089 20 N -0.231 5.231 21 N -0.728 5.728 22 C -0.213 4.213 23 H 0.080 0.920 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.958 3.042 27 H -0.294 1.294 28 H -0.303 1.303 29 H -0.268 1.268 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.411 0.589 38 H 0.244 0.756 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.371 0.629 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.839 7.427 11.208 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.074 0.926 5 C -0.002 4.002 6 N -0.350 5.350 7 C 0.385 3.615 8 O -0.452 6.452 9 C -0.267 4.267 10 C -0.044 4.044 11 N -0.133 5.133 12 C 0.005 3.995 13 C -0.154 4.154 14 H 0.096 0.904 15 C -0.173 4.173 16 C -0.042 4.042 17 O -0.325 6.325 18 C -0.031 4.031 19 N -0.069 5.069 20 N -0.104 5.104 21 N -0.368 5.368 22 C -0.345 4.345 23 H 0.098 0.902 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.789 3.211 27 H -0.221 1.221 28 H -0.230 1.230 29 H -0.193 1.193 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.247 0.753 38 H 0.260 0.740 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.203 0.797 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 22.274 8.078 10.946 26.100 hybrid contribution -0.798 0.087 -0.848 1.168 sum 21.475 8.165 10.098 25.096 Atomic orbital electron populations 1.21703 0.96100 1.00589 1.01719 1.21968 0.96530 0.97011 1.01264 1.20757 0.91058 0.93500 0.89351 0.92629 1.21682 0.94376 0.82081 1.02068 1.45874 1.07061 1.11109 1.70991 1.16991 0.82442 0.85904 0.76196 1.90736 1.56529 1.45080 1.52823 1.21559 0.92304 0.94083 1.18709 1.23851 0.99558 0.85387 0.95616 1.50818 1.09010 1.06417 1.47028 1.22680 0.83033 0.94142 0.99673 1.22820 1.01662 0.97069 0.93819 0.90386 1.22938 0.94673 0.98960 1.00748 1.23729 0.92665 0.97493 0.90356 1.89157 1.49602 1.61904 1.31841 1.23522 0.94369 0.94426 0.90823 1.81920 0.84491 1.17239 1.23262 1.74749 1.27906 0.97405 1.10357 1.42565 1.15760 1.66097 1.12379 1.19489 0.92421 1.25279 0.97313 0.90217 1.25384 1.01045 1.03558 0.96755 1.69812 1.36844 1.51031 1.04288 0.85351 0.81192 0.78427 0.76119 1.22126 1.23049 1.19306 0.93411 0.92727 0.93320 0.93406 0.90298 0.92413 0.89349 0.75302 0.74021 0.85390 0.83256 0.89811 0.86403 0.88120 0.90086 0.90261 0.92033 0.79685 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.18 71.98 0.66 -4.29 16 2 C -0.13 -4.20 5.61 30.60 0.17 -4.02 16 3 C 0.16 6.01 2.59 44.99 0.12 6.13 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 4.14 5.23 86.38 0.45 4.59 16 6 N -0.70 -25.46 5.38 -466.26 -2.51 -27.97 16 7 C 0.60 20.77 7.82 86.69 0.68 21.44 16 8 O -0.57 -20.78 16.86 -4.04 -0.07 -20.85 16 9 C -0.13 -3.87 6.99 40.82 0.29 -3.58 16 10 C 0.11 2.28 11.27 83.85 0.95 3.22 16 11 N -0.35 -6.42 3.58 -347.08 -1.24 -7.66 16 12 C 0.12 0.93 5.69 86.38 0.49 1.42 16 13 C -0.13 -1.57 3.24 -9.78 -0.03 -1.60 16 14 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 15 C -0.14 -0.81 6.74 31.61 0.21 -0.60 16 16 C 0.03 0.32 7.63 72.48 0.55 0.87 16 17 O -0.41 -7.93 11.65 -148.98 -1.74 -9.67 16 18 C 0.05 0.77 7.08 72.48 0.51 1.28 16 19 N -0.09 -2.60 13.58 37.02 0.50 -2.10 16 20 N -0.23 -8.02 12.04 -50.00 -0.60 -8.62 16 21 N -0.73 -34.69 4.51 -322.92 -1.46 -36.15 16 22 C -0.21 -11.24 7.75 84.03 0.65 -10.59 16 23 H 0.08 4.04 7.33 -2.91 -0.02 4.01 16 24 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 25 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 26 Si 0.96 46.66 29.55 68.60 2.03 48.69 16 27 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 30 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.41 16.45 7.82 -92.71 -0.73 15.73 16 38 H 0.24 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.15 -0.06 7.90 -2.38 -0.02 -0.08 16 41 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.12 -0.08 7.73 -2.38 -0.02 -0.10 16 43 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.08 1.01 7.74 -2.39 -0.02 0.99 16 46 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.37 19.79 7.80 -92.71 -0.72 19.06 16 48 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -76.86 398.25 0.90 -75.96 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.47 Total: 37.28 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.17 Total: 10.44 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -5.03 Total: -141.85 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.80 Total: -30.52 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.86 0.90 -75.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698616650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -76.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds