Wall clock time and date at job start Tue Mar 31 2020 20:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 H 1.08988 * 109.47141 * 305.00525 * 3 2 1 5 5 C 1.52996 * 109.46766 * 185.00166 * 3 2 1 6 6 N 1.46504 * 109.46681 * 185.00093 * 5 3 2 7 7 C 1.34777 * 119.99854 * 179.97438 * 6 5 3 8 8 O 1.21603 * 119.99960 * 0.02562 * 7 6 5 9 9 C 1.47523 * 120.00283 * 180.27861 * 7 6 5 10 10 C 1.36594 * 125.77370 * 179.44646 * 9 7 6 11 11 N 1.34816 * 106.84063 * 179.89993 * 10 9 7 12 12 C 1.46496 * 126.59663 * 180.09344 * 11 10 9 13 13 C 1.53000 * 109.47369 * 125.28479 * 12 11 10 14 14 H 1.08998 * 110.45674 * 52.39373 * 13 12 11 15 15 C 1.54501 * 110.51265 * 174.99746 * 13 12 11 16 16 C 1.54485 * 104.06125 * 118.64512 * 15 13 12 17 17 O 1.44424 * 104.80185 * 23.98040 * 16 15 13 18 18 C 1.44421 * 105.27400 * 319.48527 * 17 16 15 19 19 N 1.40210 * 106.80931 * 0.35270 * 11 10 9 20 20 N 1.28769 * 108.36692 * 359.77524 * 19 11 10 21 21 N 1.46503 * 109.46448 * 65.00497 * 3 2 1 22 22 C 1.36931 * 120.00128 * 274.99297 * 21 3 2 23 23 H 1.08004 * 120.00055 * 0.02562 * 22 21 3 24 24 C 1.38814 * 120.00318 * 180.02562 * 22 21 3 25 25 N 1.31617 * 120.00250 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99618 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47081 * 89.99849 * 26 24 22 28 28 H 1.48502 * 109.46987 * 209.99870 * 26 24 22 29 29 H 1.48501 * 109.47264 * 329.99993 * 26 24 22 30 30 H 1.09003 * 109.46459 * 299.99483 * 1 2 3 31 31 H 1.08992 * 109.47320 * 59.99366 * 1 2 3 32 32 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46459 * 240.00517 * 2 1 3 34 34 H 1.08992 * 109.47320 * 120.00634 * 2 1 3 35 35 H 1.08998 * 109.47328 * 65.00426 * 5 3 2 36 36 H 1.08997 * 109.47540 * 305.00173 * 5 3 2 37 37 H 0.96990 * 120.00418 * 0.02562 * 6 5 3 38 38 H 1.08000 * 126.58080 * 0.02995 * 10 9 7 39 39 H 1.08997 * 109.47014 * 245.28458 * 12 11 10 40 40 H 1.09004 * 109.47234 * 5.28605 * 12 11 10 41 41 H 1.08994 * 110.51601 * 237.28601 * 15 13 12 42 42 H 1.08997 * 110.51368 * 0.02562 * 15 13 12 43 43 H 1.09000 * 110.37188 * 142.80977 * 16 15 13 44 44 H 1.09001 * 110.37243 * 265.15033 * 16 15 13 45 45 H 1.08995 * 110.37470 * 281.68170 * 18 17 16 46 46 H 1.09007 * 110.37256 * 159.34304 * 18 17 16 47 47 H 0.97000 * 119.99835 * 95.00087 * 21 3 2 48 48 H 0.96998 * 120.00254 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3858 3.0629 -0.0858 8 8 6.1656 2.1458 -0.2578 9 6 5.8881 4.4441 0.0409 10 6 7.1988 4.8251 -0.0107 11 7 7.2228 6.1641 0.1441 12 6 8.4111 7.0209 0.1552 13 6 8.2539 8.1245 -0.8927 14 1 7.3076 8.6478 -0.7559 15 6 9.4365 9.1158 -0.8165 16 6 10.1063 9.0084 -2.2045 17 8 9.0629 8.5316 -3.0818 18 6 8.3490 7.5355 -2.3177 19 7 5.8922 6.5783 0.2985 20 7 5.1337 5.5398 0.2325 21 7 1.6526 2.0973 1.2519 22 6 0.4158 2.6734 1.3690 23 1 -0.2741 2.6446 0.5386 24 6 0.0488 3.2943 2.5551 25 7 -1.1401 3.8475 2.6678 26 14 1.2424 3.3446 3.9911 27 1 2.0773 4.5691 3.8981 28 1 0.4818 3.3598 5.2665 29 1 2.1167 2.1450 3.9504 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 3.8499 1.0377 -1.0961 36 1 3.9955 0.8310 0.6658 37 1 3.4412 3.5482 0.1316 38 1 8.0521 4.1780 -0.1509 39 1 8.5258 7.4701 1.1416 40 1 9.2924 6.4228 -0.0765 41 1 9.0748 10.1295 -0.6445 42 1 10.1334 8.8195 -0.0326 43 1 10.4599 9.9862 -2.5318 44 1 10.9311 8.2964 -2.1737 45 1 8.9043 6.5976 -2.3043 46 1 7.3526 7.3816 -2.7319 47 1 2.2721 2.1229 1.9979 48 1 -1.3965 4.2817 3.4964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698616653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:23 Heat of formation + Delta-G solvation = 23.480768 kcal Electronic energy + Delta-G solvation = -29050.585551 eV Core-core repulsion = 24950.131292 eV Total energy + Delta-G solvation = -4100.454259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.35697 -40.02625 -39.19326 -36.81617 -35.65871 -33.80636 -32.69720 -32.28398 -31.07267 -30.22036 -29.91927 -28.17042 -26.88943 -24.27079 -23.64795 -22.95164 -22.39265 -22.06409 -21.15856 -20.24198 -19.87663 -18.39697 -17.54993 -16.99784 -16.62345 -16.09663 -16.02001 -15.83414 -15.68850 -15.40100 -14.73705 -14.71318 -14.21895 -14.12480 -13.83367 -13.55541 -13.25444 -13.15266 -12.84231 -12.76747 -12.49033 -12.38023 -12.24462 -12.00360 -11.76334 -11.51400 -11.40999 -11.18677 -11.11808 -10.91439 -10.71293 -10.53962 -10.35396 -10.34956 -10.25759 -10.03067 -9.91096 -9.43627 -9.41989 -8.91864 -8.73586 -7.28426 -5.75312 -3.10963 0.97667 1.71851 1.75788 3.32038 3.35548 3.41059 3.42356 3.44437 3.49230 3.75074 3.87968 4.14046 4.16069 4.28370 4.43691 4.59809 4.61622 4.66395 4.69743 4.75095 4.88886 5.02878 5.14229 5.20994 5.23687 5.25028 5.32566 5.35440 5.49656 5.51537 5.70181 5.80996 5.92539 5.94358 6.07847 6.11839 6.20651 6.31102 6.50033 6.56319 6.61583 6.78760 6.97882 7.33136 7.68385 7.96106 8.00090 8.38139 8.42986 9.20839 9.93510 10.12355 11.42462 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.002514 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.187555 B =11135.956731 C =12128.458622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.111 3.889 6 N -0.699 5.699 7 C 0.599 3.401 8 O -0.552 6.552 9 C -0.096 4.096 10 C 0.088 3.912 11 N -0.367 5.367 12 C 0.132 3.868 13 C -0.138 4.138 14 H 0.106 0.894 15 C -0.147 4.147 16 C 0.042 3.958 17 O -0.371 6.371 18 C 0.050 3.950 19 N -0.061 5.061 20 N -0.193 5.193 21 N -0.746 5.746 22 C -0.240 4.240 23 H 0.095 0.905 24 C 0.009 3.991 25 N -0.931 5.931 26 Si 0.878 3.122 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.203 0.797 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.362 0.638 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.112 6.557 -7.885 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.349 5.349 7 C 0.383 3.617 8 O -0.431 6.431 9 C -0.235 4.235 10 C -0.068 4.068 11 N -0.152 5.152 12 C 0.010 3.990 13 C -0.158 4.158 14 H 0.124 0.876 15 C -0.185 4.185 16 C -0.035 4.035 17 O -0.289 6.289 18 C -0.027 4.027 19 N -0.041 5.041 20 N -0.067 5.067 21 N -0.389 5.389 22 C -0.369 4.369 23 H 0.113 0.887 24 C -0.187 4.187 25 N -0.579 5.579 26 Si 0.708 3.292 27 H -0.210 1.210 28 H -0.220 1.220 29 H -0.204 1.204 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.256 0.744 38 H 0.220 0.780 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.113 0.887 47 H 0.195 0.805 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 24.445 7.278 -8.049 26.746 hybrid contribution 1.293 -0.411 1.435 1.975 sum 25.739 6.867 -6.614 27.448 Atomic orbital electron populations 1.21783 0.95207 0.99663 1.03833 1.22038 0.97369 0.97802 1.00076 1.20554 0.89710 0.93043 0.90928 0.91806 1.21801 0.95753 0.82075 1.01653 1.45855 1.06767 1.11343 1.70956 1.16769 0.82898 0.85104 0.76976 1.90774 1.56401 1.44315 1.51572 1.21572 0.90570 0.95103 1.16230 1.23329 1.00073 0.85031 0.98388 1.50536 1.09231 1.06037 1.49356 1.22120 0.83360 0.91808 1.01664 1.22924 1.01950 0.95925 0.94988 0.87606 1.22957 0.96568 1.00339 0.98633 1.23464 0.90899 1.00375 0.88729 1.89188 1.45780 1.56379 1.37555 1.23506 0.97993 0.91540 0.89677 1.82044 0.82590 1.17383 1.22110 1.74780 1.26269 0.96533 1.09071 1.42824 1.16966 1.67627 1.11533 1.19036 0.90709 1.27372 0.99822 0.88724 1.24630 0.96318 1.00278 0.97516 1.69686 1.19320 1.42128 1.26746 0.86655 0.81078 0.77889 0.83543 1.20977 1.21952 1.20441 0.89325 0.93855 0.94897 0.93543 0.92663 0.91113 0.91584 0.74351 0.78000 0.87849 0.87525 0.89590 0.89822 0.88715 0.92013 0.92045 0.88734 0.80526 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.18 37.16 0.34 -2.33 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 3.02 2.59 -67.93 -0.18 2.85 16 4 H 0.06 1.19 8.08 -51.94 -0.42 0.77 16 5 C 0.11 1.80 5.23 -4.04 -0.02 1.78 16 6 N -0.70 -11.77 5.39 -61.35 -0.33 -12.10 16 7 C 0.60 9.79 7.82 -12.48 -0.10 9.69 16 8 O -0.55 -9.75 16.86 5.27 0.09 -9.66 16 9 C -0.10 -1.39 6.99 -83.55 -0.58 -1.97 16 10 C 0.09 0.92 11.27 -16.83 -0.19 0.73 16 11 N -0.37 -3.51 3.58 -61.06 -0.22 -3.73 16 12 C 0.13 0.67 5.69 -4.04 -0.02 0.64 16 13 C -0.14 -0.80 3.24 -89.06 -0.29 -1.09 16 14 H 0.11 0.81 8.06 -51.93 -0.42 0.39 16 15 C -0.15 -0.56 6.74 -25.16 -0.17 -0.73 16 16 C 0.04 0.21 7.63 37.94 0.29 0.50 16 17 O -0.37 -3.23 11.65 -35.23 -0.41 -3.64 16 18 C 0.05 0.36 7.08 37.93 0.27 0.63 16 19 N -0.06 -0.85 13.58 60.35 0.82 -0.03 16 20 N -0.19 -3.11 12.04 32.85 0.40 -2.71 16 21 N -0.75 -16.51 4.31 -53.43 -0.23 -16.74 16 22 C -0.24 -6.33 8.24 -15.06 -0.12 -6.46 16 23 H 0.10 2.67 7.55 -52.48 -0.40 2.28 16 24 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 25 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 26 Si 0.88 22.11 27.74 -169.99 -4.71 17.39 16 27 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 30 H 0.09 1.94 5.99 -51.93 -0.31 1.62 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.42 7.57 7.82 -40.82 -0.32 7.25 16 38 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.23 7.90 -51.93 -0.41 -0.18 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.15 7.73 -51.93 -0.40 -0.25 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.37 7.74 -51.93 -0.40 -0.03 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -34.30 395.13 -6.44 -40.74 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.55 Total: 10.38 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.02 Total: 2.03 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 1.21 Total: -63.20 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.32 Total: -13.30 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.30 -6.44 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698616653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.220 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds