Wall clock time and date at job start Tue Mar 31 2020 20:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47487 * 2 1 4 4 N 1.46899 * 109.47424 * 174.89195 * 3 2 1 5 5 C 1.46895 * 111.00398 * 76.02245 * 4 3 2 6 6 C 1.52996 * 109.47191 * 199.54928 * 5 4 3 7 7 N 1.46505 * 109.47049 * 174.88745 * 6 5 4 8 8 C 1.34777 * 120.00088 * 180.27661 * 7 6 5 9 9 O 1.21601 * 119.99813 * 359.71808 * 8 7 6 10 10 C 1.47428 * 120.00150 * 179.72665 * 8 7 6 11 11 C 1.41289 * 126.41478 * 359.67769 * 10 8 7 12 12 N 1.30447 * 108.02325 * 179.85860 * 11 10 8 13 13 N 1.39929 * 108.89651 * 0.41207 * 12 11 10 14 14 C 1.46504 * 125.75679 * 179.73923 * 13 12 11 15 15 C 1.34261 * 108.49474 * 359.73741 * 13 12 11 16 16 C 1.46904 * 111.00112 * 199.97954 * 4 3 2 17 17 C 1.50702 * 109.47278 * 66.04171 * 16 4 3 18 18 O 1.21297 * 119.99930 * 359.97438 * 17 16 4 19 19 N 1.34777 * 119.99808 * 180.02562 * 17 16 4 20 20 C 1.37096 * 119.99783 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00027 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00195 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99489 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00120 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47453 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47140 * 120.00268 * 24 22 20 27 27 H 1.48502 * 109.47040 * 239.99836 * 24 22 20 28 28 H 1.09001 * 109.47632 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47184 * 300.00580 * 1 2 3 30 30 H 1.09002 * 109.46747 * 59.99961 * 1 2 3 31 31 H 1.08997 * 109.46749 * 239.99733 * 2 1 3 32 32 H 1.09002 * 109.46747 * 120.00039 * 2 1 3 33 33 H 1.09001 * 109.47191 * 54.88791 * 3 2 1 34 34 H 1.09006 * 109.47015 * 294.89007 * 3 2 1 35 35 H 1.09000 * 109.47122 * 79.54384 * 5 4 3 36 36 H 1.09006 * 109.47092 * 319.54514 * 5 4 3 37 37 H 1.08995 * 109.47247 * 54.88562 * 6 5 4 38 38 H 1.08999 * 109.46851 * 294.87913 * 6 5 4 39 39 H 0.97003 * 120.00004 * 359.97438 * 7 6 5 40 40 H 1.08002 * 125.98928 * 0.02562 * 11 10 8 41 41 H 1.09007 * 109.46495 * 269.99684 * 14 13 12 42 42 H 1.08997 * 109.46925 * 29.98966 * 14 13 12 43 43 H 1.08998 * 109.47529 * 150.00097 * 14 13 12 44 44 H 1.07993 * 126.29610 * 179.97438 * 15 13 12 45 45 H 1.08999 * 109.46787 * 186.04312 * 16 4 3 46 46 H 1.09003 * 109.46807 * 306.04096 * 16 4 3 47 47 H 0.96991 * 120.00159 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99400 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5039 1.4442 0.1233 5 6 4.1398 1.0743 -1.1481 6 6 5.5752 0.6144 -0.8856 7 7 6.1691 0.1306 -2.1344 8 6 7.4346 -0.3330 -2.1436 9 8 8.0852 -0.3450 -1.1163 10 6 8.0302 -0.8255 -3.3990 11 6 7.3994 -0.8792 -4.6621 12 7 8.2515 -1.3718 -5.5182 13 7 9.4474 -1.6614 -4.8518 14 6 10.6502 -2.2339 -5.4615 15 6 9.3066 -1.3262 -3.5594 16 6 3.9908 2.7471 0.5960 17 6 3.5119 2.9811 2.0056 18 8 2.8315 2.1450 2.5616 19 7 3.8388 4.1199 2.6480 20 6 3.4036 4.3326 3.9306 21 1 2.7985 3.5877 4.4259 22 6 3.7411 5.5064 4.5931 23 7 4.4779 6.4124 3.9905 24 14 3.1475 5.7964 6.3404 25 1 2.3412 4.6328 6.7889 26 1 4.3176 5.9632 7.2394 27 1 2.3123 7.0236 6.3821 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6039 1.9820 0.8407 34 1 1.7534 1.9291 -0.9323 35 1 4.1508 1.9375 -1.8136 36 1 3.5781 0.2641 -1.6132 37 1 5.5702 -0.1900 -0.1501 38 1 6.1609 1.4511 -0.5050 39 1 5.6501 0.1398 -2.9538 40 1 6.3897 -0.5647 -4.8811 41 1 10.6037 -3.3215 -5.4049 42 1 10.7097 -1.9267 -6.5056 43 1 11.5320 -1.8798 -4.9276 44 1 10.0544 -1.4297 -2.7870 45 1 5.0806 2.7566 0.5762 46 1 3.6087 3.5350 -0.0531 47 1 4.3826 4.7887 2.2033 48 1 4.7131 7.2320 4.4529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714643671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:26 Heat of formation + Delta-G solvation = -19.960385 kcal Electronic energy + Delta-G solvation = -28358.258034 eV Core-core repulsion = 24255.920026 eV Total energy + Delta-G solvation = -4102.338009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33171 -40.58027 -40.09006 -38.37961 -36.01779 -35.70175 -34.41433 -33.99248 -33.19996 -31.56077 -30.34459 -28.93387 -27.80584 -26.66665 -25.31843 -23.69070 -22.86495 -21.89885 -21.86738 -21.09623 -20.82133 -19.84194 -18.97353 -17.89042 -17.13097 -16.89583 -16.80255 -16.61126 -16.37896 -16.11723 -15.92864 -15.81164 -15.48992 -15.34771 -15.11518 -14.70102 -14.46696 -14.23829 -13.88685 -13.77895 -13.55336 -13.48061 -13.44183 -13.40651 -13.03982 -12.79343 -12.65114 -12.45385 -12.38283 -12.17663 -12.11459 -12.06977 -11.71818 -11.50890 -11.30799 -10.96341 -10.58726 -10.22809 -10.15024 -9.96610 -9.63210 -9.19045 -8.44603 -5.92623 0.53306 1.17055 1.36964 1.41653 1.44242 1.55995 2.08917 2.15472 2.31699 2.48404 2.92319 3.22569 3.39960 3.54988 3.81392 3.92555 4.05487 4.12355 4.15439 4.17874 4.25619 4.37849 4.42848 4.45143 4.52308 4.57596 4.57636 4.61585 4.67506 4.70754 4.74343 4.87287 5.00563 5.00828 5.07795 5.25005 5.39420 5.43151 5.44070 5.47882 5.48792 5.86006 5.93105 6.12593 6.25478 6.49148 6.63370 6.67382 7.15850 7.33691 7.59867 8.15856 8.73247 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002115 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.658210 B =13236.898502 C =14964.237975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.534 5.534 5 C 0.053 3.947 6 C 0.131 3.869 7 N -0.708 5.708 8 C 0.592 3.408 9 O -0.597 6.597 10 C -0.317 4.317 11 C 0.089 3.911 12 N -0.326 5.326 13 N -0.362 5.362 14 C 0.086 3.914 15 C 0.129 3.871 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.610 6.610 19 N -0.577 5.577 20 C -0.328 4.328 21 H 0.079 0.921 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.270 1.270 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.416 0.584 40 H 0.220 0.780 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.204 0.796 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -14.197 -23.973 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.259 5.259 5 C -0.075 4.075 6 C 0.007 3.993 7 N -0.360 5.360 8 C 0.381 3.619 9 O -0.479 6.479 10 C -0.332 4.332 11 C -0.098 4.098 12 N -0.146 5.146 13 N -0.140 5.140 14 C -0.054 4.054 15 C -0.024 4.024 16 C -0.076 4.076 17 C 0.229 3.771 18 O -0.495 6.495 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.097 0.903 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.236 0.764 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.220 0.780 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.692 -15.331 -23.792 29.331 hybrid contribution -0.367 1.587 1.049 1.937 sum 7.325 -13.744 -22.744 27.565 Atomic orbital electron populations 1.21694 0.94974 1.02169 1.01512 1.21382 0.95873 0.95390 1.01823 1.22163 0.86032 0.98462 1.00037 1.61317 1.07063 1.28317 1.29167 1.22267 0.93419 1.01817 0.89962 1.21092 0.93404 0.98803 0.86031 1.45442 1.13675 1.64489 1.12444 1.17552 0.81224 0.76052 0.87057 1.90781 1.62764 1.58571 1.35770 1.20204 0.97400 1.20704 0.94864 1.24515 1.00504 0.95771 0.89032 1.77143 0.92667 1.22768 1.22028 1.48778 1.12609 1.46602 1.06047 1.22393 0.81810 1.00068 1.01090 1.23322 0.97853 0.93387 0.87815 1.21786 1.01479 0.91815 0.92471 1.20773 0.84259 0.82410 0.89641 1.90488 1.43309 1.45986 1.69737 1.41954 1.47808 1.17815 1.13934 1.19676 1.31308 1.03776 0.91016 0.90335 1.26034 0.96776 0.94897 1.03827 1.69687 1.37702 1.09344 1.39609 0.84880 0.78144 0.78186 0.77179 1.19814 1.19809 1.19528 0.91426 0.94578 0.91502 0.90321 0.93787 0.92846 0.93296 0.91787 0.87723 0.92775 0.93053 0.74699 0.76369 0.88825 0.88222 0.86560 0.77969 0.88022 0.91097 0.77172 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.91 71.98 0.71 -2.62 16 2 C -0.11 -2.79 5.98 30.59 0.18 -2.61 16 3 C 0.06 1.83 4.46 86.30 0.39 2.21 16 4 N -0.53 -16.55 4.10 -900.80 -3.70 -20.25 16 5 C 0.05 1.12 4.92 86.30 0.42 1.54 16 6 C 0.13 3.23 5.70 86.38 0.49 3.72 16 7 N -0.71 -13.59 5.55 -466.38 -2.59 -16.18 16 8 C 0.59 14.56 7.81 86.66 0.68 15.23 16 9 O -0.60 -20.38 16.90 -4.03 -0.07 -20.45 16 10 C -0.32 -6.00 6.13 -20.15 -0.12 -6.12 16 11 C 0.09 1.31 11.50 85.65 0.99 2.30 16 12 N -0.33 -5.58 12.50 -56.27 -0.70 -6.29 16 13 N -0.36 -4.96 3.98 -367.77 -1.46 -6.43 16 14 C 0.09 0.38 11.44 127.77 1.46 1.84 16 15 C 0.13 2.07 11.30 84.28 0.95 3.02 16 16 C 0.06 1.94 5.28 85.56 0.45 2.40 16 17 C 0.44 21.36 7.29 87.66 0.64 22.00 16 18 O -0.61 -33.84 14.12 -3.08 -0.04 -33.89 16 19 N -0.58 -30.29 5.29 -306.98 -1.62 -31.91 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 23 N -0.92 -50.85 13.05 21.66 0.28 -50.56 16 24 Si 0.99 43.99 29.55 68.60 2.03 46.02 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.60 6.91 -2.39 -0.02 1.58 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 2.11 5.85 -2.39 -0.01 2.10 16 34 H 0.05 1.21 8.00 -2.38 -0.02 1.19 16 35 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 36 H 0.10 1.72 6.58 -2.38 -0.02 1.70 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.46 6.95 -2.39 -0.02 1.44 16 39 H 0.42 4.60 7.43 -92.71 -0.69 3.91 16 40 H 0.22 1.46 7.50 -2.91 -0.02 1.44 16 41 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.10 3.33 6.71 -2.39 -0.02 3.31 16 46 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 47 H 0.39 19.78 7.90 -92.71 -0.73 19.05 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -82.37 401.87 0.22 -82.15 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.43 Total: 33.47 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 8.52 Total: 24.31 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -9.79 Total: -131.62 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.11 Total: -54.34 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -82.37 0.22 -82.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714643671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.190 kcal (2) G-P(sol) polarization free energy of solvation -82.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds