Wall clock time and date at job start Tue Mar 31 2020 20:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47627 * 2 1 4 4 N 1.46499 * 109.47308 * 120.00320 * 2 1 3 5 5 C 1.35038 * 124.88223 * 274.72259 * 4 2 1 6 6 C 1.35365 * 107.22383 * 179.86926 * 5 4 2 7 7 C 1.41496 * 105.50673 * 0.36926 * 6 5 4 8 8 C 1.47712 * 126.51826 * 179.76409 * 7 6 5 9 9 O 1.21565 * 120.00262 * 353.48849 * 8 7 6 10 10 N 1.34776 * 120.00234 * 173.48320 * 8 7 6 11 11 C 1.46511 * 119.99800 * 3.50649 * 10 8 7 12 12 C 1.46492 * 120.00530 * 183.50107 * 10 8 7 13 13 C 1.52998 * 109.47152 * 90.00131 * 12 10 8 14 14 N 1.46904 * 109.47440 * 180.02562 * 13 12 10 15 15 C 1.46900 * 111.00186 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47235 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99881 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00113 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00024 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00217 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00176 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99943 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00312 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47372 * 59.99869 * 23 21 19 25 25 H 1.48500 * 109.46995 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46871 * 299.99742 * 23 21 19 27 27 N 1.28474 * 124.88520 * 95.01640 * 4 2 1 28 28 H 1.08999 * 109.46676 * 300.00170 * 1 2 3 29 29 H 1.08990 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46706 * 59.99229 * 1 2 3 31 31 H 1.09008 * 109.46707 * 239.99886 * 2 1 3 32 32 H 1.08998 * 109.47150 * 59.99619 * 3 2 1 33 33 H 1.08996 * 109.47828 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47051 * 300.00513 * 3 2 1 35 35 H 1.07998 * 126.38242 * 359.97438 * 5 4 2 36 36 H 1.08004 * 127.24269 * 180.13776 * 6 5 4 37 37 H 1.09005 * 109.47047 * 84.09672 * 11 10 8 38 38 H 1.08996 * 109.46823 * 204.10211 * 11 10 8 39 39 H 1.09003 * 109.47004 * 324.09990 * 11 10 8 40 40 H 1.09001 * 109.47708 * 210.00342 * 12 10 8 41 41 H 1.09000 * 109.47230 * 330.00416 * 12 10 8 42 42 H 1.08999 * 109.47445 * 300.00403 * 13 12 10 43 43 H 1.09001 * 109.47224 * 60.00385 * 13 12 10 44 44 H 1.00899 * 110.99425 * 56.04550 * 14 13 12 45 45 H 1.09005 * 109.47014 * 300.00335 * 15 14 13 46 46 H 1.08999 * 109.47246 * 59.99667 * 15 14 13 47 47 H 0.97005 * 120.00246 * 359.97438 * 18 16 15 48 48 H 0.97000 * 120.00242 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1899 -0.1139 2.4050 6 6 2.6490 -1.0714 3.2445 7 6 2.7476 -2.2456 2.4611 8 6 3.2084 -3.5720 2.9197 9 8 3.6609 -3.7045 4.0401 10 7 3.1270 -4.6356 2.0958 11 6 2.6536 -4.4621 0.7202 12 6 3.5120 -5.9651 2.5757 13 6 2.2914 -6.6626 3.1795 14 7 2.6775 -7.9956 3.6612 15 6 1.5278 -8.6966 4.2484 16 6 1.9617 -10.0567 4.7308 17 8 3.1151 -10.4078 4.5982 18 7 1.0679 -10.8835 5.3087 19 6 1.4625 -12.1210 5.7472 20 1 2.4897 -12.4333 5.6298 21 6 0.5411 -12.9732 6.3435 22 7 -0.7086 -12.5931 6.4867 23 14 1.0789 -14.6592 6.9415 24 1 2.1412 -14.5049 7.9676 25 1 -0.0835 -15.3681 7.5345 26 1 1.6064 -15.4453 5.7973 27 7 2.3503 -1.9309 1.2445 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.9952 0.9184 2.6557 36 1 2.8926 -0.9613 4.2909 37 1 3.4838 -4.1493 0.0870 38 1 2.2516 -5.4062 0.3526 39 1 1.8730 -3.7016 0.6978 40 1 3.8929 -6.5559 1.7427 41 1 4.2870 -5.8667 3.3357 42 1 1.9104 -6.0718 4.0125 43 1 1.5162 -6.7611 2.4195 44 1 3.4395 -7.9352 4.3199 45 1 1.1409 -8.1198 5.0885 46 1 0.7478 -8.8095 3.4954 47 1 0.1453 -10.6029 5.4145 48 1 -1.3519 -13.1881 6.9027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714766033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:23 Heat of formation + Delta-G solvation = 22.380313 kcal Electronic energy + Delta-G solvation = -28142.660904 eV Core-core repulsion = 24042.158926 eV Total energy + Delta-G solvation = -4100.501978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05417 -39.72915 -38.21011 -36.43552 -36.21142 -34.86704 -33.75536 -31.26820 -31.25280 -31.03844 -29.39981 -28.04542 -26.91892 -26.14142 -24.51059 -23.64505 -22.76530 -21.69633 -20.61942 -19.56761 -19.08405 -17.85356 -17.79441 -17.08024 -16.49168 -16.16606 -16.15789 -15.47630 -15.24991 -14.97939 -14.53440 -14.34953 -14.17137 -13.95660 -13.67600 -13.59019 -13.51082 -13.23849 -13.06753 -13.00515 -12.92693 -12.81394 -12.60550 -12.14992 -12.09162 -11.94854 -11.87577 -11.46301 -11.43143 -11.04072 -10.90802 -10.84865 -10.39899 -10.19552 -10.15716 -9.55900 -9.44632 -9.38438 -8.78655 -8.38027 -8.00135 -7.90150 -6.36271 -3.76986 1.32800 1.85036 1.98887 2.84311 3.24601 3.26012 3.29581 3.34507 3.75923 3.97439 4.10396 4.17329 4.24238 4.30177 4.38104 4.51953 4.71743 4.76003 4.92603 4.96378 5.07704 5.08841 5.15342 5.20637 5.25522 5.27137 5.32854 5.40703 5.42552 5.44825 5.50831 5.60724 5.73031 5.83564 5.93663 6.00960 6.06863 6.11122 6.31271 6.39597 6.50694 7.21725 7.26215 7.58248 7.60237 7.72965 8.07140 8.11837 8.67285 9.23267 9.60203 10.12019 10.81502 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.001614 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.999554 B =17339.568364 C =17583.165049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 C -0.165 4.165 4 N -0.281 5.281 5 C -0.017 4.017 6 C -0.178 4.178 7 C -0.014 4.014 8 C 0.600 3.400 9 O -0.531 6.531 10 N -0.602 5.602 11 C 0.076 3.924 12 C 0.117 3.883 13 C 0.046 3.954 14 N -0.667 5.667 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 N -0.257 5.257 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 32.049 -15.656 35.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.223 4.223 4 N -0.069 5.069 5 C -0.159 4.159 6 C -0.206 4.206 7 C -0.173 4.173 8 C 0.386 3.614 9 O -0.405 6.405 10 N -0.335 5.335 11 C -0.067 4.067 12 C -0.005 4.005 13 C -0.085 4.085 14 N -0.300 5.300 15 C -0.080 4.080 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.093 5.093 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.196 0.804 36 H 0.179 0.821 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.171 0.829 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.702 30.934 -16.847 35.231 hybrid contribution -0.579 0.204 1.899 1.996 sum 0.123 31.138 -14.948 34.541 Atomic orbital electron populations 1.22236 0.92736 1.03823 1.03608 1.21601 0.95593 0.93390 0.85384 1.22199 1.02561 0.93477 1.04081 1.45920 1.45307 1.06144 1.09578 1.22749 1.06816 1.00788 0.85596 1.21776 1.06507 0.90966 1.01378 1.21927 1.08302 0.96091 0.91009 1.17021 0.78135 0.81934 0.84335 1.90809 1.45669 1.84501 1.19532 1.47647 1.65208 1.07483 1.13162 1.22129 1.00572 1.02931 0.81111 1.21461 0.97236 0.80951 1.00900 1.22263 0.97560 0.89448 0.99188 1.60012 1.09179 1.16225 1.44537 1.21653 0.93606 0.94554 0.98221 1.19803 0.86816 0.86644 0.83993 1.90519 1.18910 1.76677 1.60555 1.41850 1.11003 1.14800 1.52449 1.19668 0.97303 0.90811 1.35126 0.87953 1.25259 0.94965 1.00168 0.97568 1.69608 1.02504 1.37874 1.44436 0.85909 0.77788 0.81380 0.79075 1.19923 1.21019 1.19906 1.73690 1.16417 0.97280 1.21944 0.91544 0.91256 0.89938 0.87221 0.91168 0.91208 0.89569 0.80414 0.82096 0.92667 0.91119 0.88883 0.89124 0.89519 0.95124 0.91102 0.82941 0.93817 0.89644 0.77457 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.48 9.52 37.16 0.35 -0.13 16 2 C 0.14 0.51 3.80 -67.93 -0.26 0.26 16 3 C -0.17 -0.27 8.80 37.15 0.33 0.06 16 4 N -0.28 -2.03 3.22 -54.83 -0.18 -2.20 16 5 C -0.02 -0.12 10.54 -17.17 -0.18 -0.30 16 6 C -0.18 -1.78 10.81 -39.37 -0.43 -2.21 16 7 C -0.01 -0.16 6.82 -82.77 -0.56 -0.73 16 8 C 0.60 8.50 7.68 -12.39 -0.10 8.40 16 9 O -0.53 -9.19 16.49 5.31 0.09 -9.10 16 10 N -0.60 -7.44 2.87 -182.74 -0.53 -7.96 16 11 C 0.08 0.71 9.63 59.85 0.58 1.29 16 12 C 0.12 1.53 5.67 -4.05 -0.02 1.51 16 13 C 0.05 0.67 6.01 -3.82 -0.02 0.64 16 14 N -0.67 -11.73 6.13 -115.06 -0.70 -12.43 16 15 C 0.05 1.00 6.17 -4.98 -0.03 0.97 16 16 C 0.44 10.93 7.82 -10.99 -0.09 10.84 16 17 O -0.58 -16.42 15.78 5.55 0.09 -16.33 16 18 N -0.56 -14.84 5.29 -10.97 -0.06 -14.90 16 19 C -0.30 -8.60 9.68 -14.94 -0.14 -8.75 16 20 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 23 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 N -0.26 -2.54 8.50 33.42 0.28 -2.26 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.08 7.05 -51.93 -0.37 -0.29 16 33 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 35 H 0.18 0.60 7.16 -52.49 -0.38 0.22 16 36 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 39 H 0.09 0.88 5.35 -51.93 -0.28 0.60 16 40 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 41 H 0.09 1.25 7.37 -51.93 -0.38 0.86 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.35 6.44 8.43 -39.29 -0.33 6.11 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.39 9.86 7.90 -40.82 -0.32 9.53 16 48 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -35.90 403.09 -7.38 -43.28 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.48 Total: 11.35 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -0.67 Total: 12.36 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -0.46 Total: -64.15 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.18 Total: -25.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.90 -7.38 -43.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714766033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.661 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds