Wall clock time and date at job start Tue Mar 31 2020 20:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47627 * 2 1 4 4 N 1.46499 * 109.47308 * 120.00320 * 2 1 3 5 5 C 1.35038 * 124.88223 * 274.72259 * 4 2 1 6 6 C 1.35365 * 107.22383 * 179.86926 * 5 4 2 7 7 C 1.41496 * 105.50673 * 0.36926 * 6 5 4 8 8 C 1.47712 * 126.51826 * 179.76409 * 7 6 5 9 9 O 1.21565 * 120.00262 * 353.48849 * 8 7 6 10 10 N 1.34776 * 120.00234 * 173.48320 * 8 7 6 11 11 C 1.46511 * 119.99800 * 3.50649 * 10 8 7 12 12 C 1.46492 * 120.00530 * 183.50107 * 10 8 7 13 13 C 1.52998 * 109.47152 * 90.00131 * 12 10 8 14 14 N 1.46904 * 109.47440 * 180.02562 * 13 12 10 15 15 C 1.46900 * 111.00186 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47235 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99881 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00113 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00024 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00217 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00176 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99943 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00312 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47372 * 59.99869 * 23 21 19 25 25 H 1.48500 * 109.46995 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46871 * 299.99742 * 23 21 19 27 27 N 1.28474 * 124.88520 * 95.01640 * 4 2 1 28 28 H 1.08999 * 109.46676 * 300.00170 * 1 2 3 29 29 H 1.08990 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46706 * 59.99229 * 1 2 3 31 31 H 1.09008 * 109.46707 * 239.99886 * 2 1 3 32 32 H 1.08998 * 109.47150 * 59.99619 * 3 2 1 33 33 H 1.08996 * 109.47828 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47051 * 300.00513 * 3 2 1 35 35 H 1.07998 * 126.38242 * 359.97438 * 5 4 2 36 36 H 1.08004 * 127.24269 * 180.13776 * 6 5 4 37 37 H 1.09005 * 109.47047 * 84.09672 * 11 10 8 38 38 H 1.08996 * 109.46823 * 204.10211 * 11 10 8 39 39 H 1.09003 * 109.47004 * 324.09990 * 11 10 8 40 40 H 1.09001 * 109.47708 * 210.00342 * 12 10 8 41 41 H 1.09000 * 109.47230 * 330.00416 * 12 10 8 42 42 H 1.08999 * 109.47445 * 300.00403 * 13 12 10 43 43 H 1.09001 * 109.47224 * 60.00385 * 13 12 10 44 44 H 1.00899 * 110.99425 * 56.04550 * 14 13 12 45 45 H 1.09005 * 109.47014 * 300.00335 * 15 14 13 46 46 H 1.08999 * 109.47246 * 59.99667 * 15 14 13 47 47 H 0.97005 * 120.00246 * 359.97438 * 18 16 15 48 48 H 0.97000 * 120.00242 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1899 -0.1139 2.4050 6 6 2.6490 -1.0714 3.2445 7 6 2.7476 -2.2456 2.4611 8 6 3.2084 -3.5720 2.9197 9 8 3.6609 -3.7045 4.0401 10 7 3.1270 -4.6356 2.0958 11 6 2.6536 -4.4621 0.7202 12 6 3.5120 -5.9651 2.5757 13 6 2.2914 -6.6626 3.1795 14 7 2.6775 -7.9956 3.6612 15 6 1.5278 -8.6966 4.2484 16 6 1.9617 -10.0567 4.7308 17 8 3.1151 -10.4078 4.5982 18 7 1.0679 -10.8835 5.3087 19 6 1.4625 -12.1210 5.7472 20 1 2.4897 -12.4333 5.6298 21 6 0.5411 -12.9732 6.3435 22 7 -0.7086 -12.5931 6.4867 23 14 1.0789 -14.6592 6.9415 24 1 2.1412 -14.5049 7.9676 25 1 -0.0835 -15.3681 7.5345 26 1 1.6064 -15.4453 5.7973 27 7 2.3503 -1.9309 1.2445 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.9952 0.9184 2.6557 36 1 2.8926 -0.9613 4.2909 37 1 3.4838 -4.1493 0.0870 38 1 2.2516 -5.4062 0.3526 39 1 1.8730 -3.7016 0.6978 40 1 3.8929 -6.5559 1.7427 41 1 4.2870 -5.8667 3.3357 42 1 1.9104 -6.0718 4.0125 43 1 1.5162 -6.7611 2.4195 44 1 3.4395 -7.9352 4.3199 45 1 1.1409 -8.1198 5.0885 46 1 0.7478 -8.8095 3.4954 47 1 0.1453 -10.6029 5.4145 48 1 -1.3519 -13.1881 6.9027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714766033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:22 Heat of formation + Delta-G solvation = -4.312880 kcal Electronic energy + Delta-G solvation = -28143.818408 eV Core-core repulsion = 24042.158926 eV Total energy + Delta-G solvation = -4101.659482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.71103 -40.77631 -40.14921 -37.55390 -36.74489 -36.25822 -35.70998 -33.29108 -31.97284 -31.89094 -30.48045 -28.22584 -28.08502 -27.47599 -26.01335 -24.65346 -23.63769 -22.70624 -21.16507 -21.11870 -20.33844 -19.89791 -18.44957 -17.97455 -17.80908 -17.30637 -17.10283 -16.96791 -16.49178 -16.12767 -15.94092 -15.45981 -15.36443 -15.13705 -14.85711 -14.73961 -14.40869 -14.11302 -13.91942 -13.86167 -13.78409 -13.53979 -13.40084 -13.28753 -13.21947 -13.04412 -12.93235 -12.76872 -12.43668 -12.32744 -12.12386 -12.11677 -12.10780 -11.63654 -11.51026 -11.24713 -10.40590 -10.22683 -10.10119 -10.03039 -9.72869 -9.45716 -8.46977 -5.96314 0.49891 1.18151 1.40199 1.41779 1.45738 1.53290 1.90989 2.02979 2.29408 2.30565 2.94900 3.19666 3.24924 3.51286 3.66172 3.88196 3.92297 3.95627 4.05172 4.09283 4.19561 4.28126 4.36779 4.45393 4.46494 4.54763 4.64696 4.66738 4.68363 4.72817 4.76322 4.81209 4.84388 4.88470 4.91379 5.04026 5.20386 5.24833 5.30408 5.40109 5.49133 5.81072 5.92418 6.04183 6.23951 6.28060 6.58632 6.83721 7.09039 7.11086 7.53942 8.09150 8.70220 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.001614 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.999554 B =17339.568364 C =17583.165049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.272 5.272 5 C 0.003 3.997 6 C -0.206 4.206 7 C -0.047 4.047 8 C 0.592 3.408 9 O -0.576 6.576 10 N -0.599 5.599 11 C 0.077 3.923 12 C 0.122 3.878 13 C 0.057 3.943 14 N -0.674 5.674 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.571 5.571 19 C -0.338 4.338 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.996 3.004 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.271 1.271 27 N -0.260 5.260 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.218 0.782 36 H 0.157 0.843 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.087 0.913 44 H 0.344 0.656 45 H 0.061 0.939 46 H 0.109 0.891 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 33.773 -17.259 37.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 C -0.219 4.219 4 N -0.062 5.062 5 C -0.140 4.140 6 C -0.234 4.234 7 C -0.205 4.205 8 C 0.380 3.620 9 O -0.455 6.455 10 N -0.331 5.331 11 C -0.065 4.065 12 C -0.001 4.001 13 C -0.073 4.073 14 N -0.306 5.306 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.819 3.181 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.196 1.196 27 N -0.097 5.097 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.235 0.765 36 H 0.175 0.825 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.106 0.894 44 H 0.163 0.837 45 H 0.078 0.922 46 H 0.127 0.873 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.663 32.678 -18.500 37.557 hybrid contribution -0.207 -0.208 2.294 2.313 sum -0.871 32.471 -16.206 36.301 Atomic orbital electron populations 1.22226 0.91880 1.03005 1.04862 1.22004 0.96198 0.94384 0.84048 1.22219 1.02049 0.91944 1.05663 1.46408 1.43580 1.05444 1.10753 1.23230 1.04376 1.01733 0.84626 1.21947 1.08147 0.91403 1.01871 1.21742 1.10673 0.95653 0.92389 1.17441 0.77525 0.83100 0.83924 1.90765 1.47872 1.85386 1.21430 1.47733 1.64594 1.06715 1.14054 1.22261 1.00921 1.03862 0.79468 1.21341 0.96227 0.81569 1.00937 1.22234 0.98429 0.87633 0.99049 1.60034 1.08570 1.17916 1.44116 1.21530 0.94388 0.91318 0.99432 1.20768 0.86006 0.88165 0.82531 1.90488 1.20592 1.77967 1.61769 1.41910 1.11439 1.14624 1.52887 1.19671 0.96898 0.92607 1.37534 0.90213 1.26075 0.94858 1.03457 0.96846 1.69671 1.03119 1.39139 1.44146 0.84955 0.77835 0.76806 0.78515 1.19735 1.19368 1.19607 1.73614 1.16446 0.98743 1.20926 0.91400 0.93078 0.87590 0.86873 0.90154 0.91985 0.87472 0.76500 0.82529 0.91825 0.89577 0.88752 0.87616 0.91362 0.96247 0.89447 0.83735 0.92151 0.87347 0.76960 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 9.52 71.98 0.69 0.16 16 2 C 0.13 0.63 3.80 44.99 0.17 0.80 16 3 C -0.16 0.01 8.80 71.98 0.63 0.64 16 4 N -0.27 -3.45 3.22 -327.38 -1.05 -4.51 16 5 C 0.00 0.04 10.54 83.54 0.88 0.92 16 6 C -0.21 -4.13 10.81 22.41 0.24 -3.88 16 7 C -0.05 -1.14 6.82 42.46 0.29 -0.85 16 8 C 0.59 17.47 7.68 86.75 0.67 18.14 16 9 O -0.58 -21.24 16.49 -3.92 -0.06 -21.31 16 10 N -0.60 -14.86 2.87 -850.34 -2.44 -17.31 16 11 C 0.08 1.37 9.63 127.77 1.23 2.60 16 12 C 0.12 3.21 5.67 86.38 0.49 3.70 16 13 C 0.06 1.61 6.01 86.30 0.52 2.12 16 14 N -0.67 -23.59 6.13 -517.93 -3.17 -26.76 16 15 C 0.07 2.46 6.17 85.56 0.53 2.99 16 16 C 0.44 21.95 7.82 87.66 0.69 22.63 16 17 O -0.62 -35.94 15.78 -3.07 -0.05 -35.99 16 18 N -0.57 -30.53 5.29 -307.00 -1.62 -32.15 16 19 C -0.34 -19.77 9.68 84.04 0.81 -18.96 16 20 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 23 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 N -0.26 -4.94 8.50 -48.18 -0.41 -5.35 16 28 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.08 -0.14 7.05 -2.39 -0.02 -0.16 16 33 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.22 0.70 7.16 -2.91 -0.02 0.68 16 36 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 39 H 0.09 1.70 5.35 -2.39 -0.01 1.68 16 40 H 0.11 2.44 8.07 -2.39 -0.02 2.42 16 41 H 0.07 2.06 7.37 -2.39 -0.02 2.04 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.34 12.91 8.43 -89.69 -0.76 12.15 16 45 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 47 H 0.40 20.09 7.90 -92.70 -0.73 19.36 16 48 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -80.05 403.09 1.29 -78.76 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.50 Total: 38.36 kcal Atomic # 6 Polarization: 22.50 SS G_CDS: 8.30 Total: 30.80 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -8.42 Total: -136.51 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -0.11 Total: -57.30 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -80.05 1.29 -78.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714766033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.447 kcal (2) G-P(sol) polarization free energy of solvation -80.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds