Wall clock time and date at job start Tue Mar 31 2020 21:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47344 * 2 1 4 4 N 1.46500 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00018 * 89.99655 * 4 3 2 6 6 O 1.21278 * 120.00330 * 174.97709 * 5 4 3 7 7 C 1.50704 * 120.00150 * 354.97864 * 5 4 3 8 8 N 1.46499 * 109.47179 * 179.97438 * 7 5 4 9 9 N 1.40170 * 126.34989 * 269.99949 * 8 7 5 10 10 C 1.29400 * 108.14092 * 180.02562 * 9 8 7 11 11 N 1.37359 * 108.82841 * 359.73958 * 10 9 8 12 12 C 1.46503 * 125.83516 * 180.30212 * 11 10 9 13 13 C 1.34817 * 108.33495 * 0.43150 * 11 10 9 14 14 O 1.21816 * 126.30629 * 179.84057 * 13 11 10 15 15 C 1.46502 * 119.99993 * 269.99902 * 4 3 2 16 16 H 1.09001 * 110.63869 * 178.12597 * 15 4 3 17 17 C 1.55156 * 110.71829 * 54.79216 * 15 4 3 18 18 C 1.54909 * 101.58014 * 277.13500 * 17 15 4 19 19 N 1.47419 * 104.83631 * 322.99584 * 18 17 15 20 20 C 1.36934 * 125.65118 * 204.09523 * 19 18 17 21 21 H 1.08003 * 120.00349 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00112 * 0.03280 * 20 19 18 23 23 N 1.31625 * 119.99572 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00421 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47421 * 90.00215 * 24 22 20 26 26 H 1.48495 * 109.47216 * 210.00406 * 24 22 20 27 27 H 1.48505 * 109.46827 * 330.00266 * 24 22 20 28 28 C 1.47028 * 108.70352 * 24.12461 * 19 18 17 29 29 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47172 * 300.00122 * 1 2 3 31 31 H 1.08994 * 109.47460 * 60.00144 * 1 2 3 32 32 H 1.09000 * 109.47048 * 239.99343 * 2 1 3 33 33 H 1.09010 * 109.47138 * 119.99666 * 2 1 3 34 34 H 1.08999 * 109.47085 * 59.99825 * 3 2 1 35 35 H 1.08996 * 109.46632 * 299.99770 * 3 2 1 36 36 H 1.09003 * 109.47059 * 59.99811 * 7 5 4 37 37 H 1.09001 * 109.47007 * 300.00184 * 7 5 4 38 38 H 1.07995 * 125.58816 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.46838 * 270.14937 * 12 11 10 40 40 H 1.08998 * 109.46613 * 30.15474 * 12 11 10 41 41 H 1.08998 * 109.47026 * 150.15015 * 12 11 10 42 42 H 1.08995 * 111.00943 * 35.21300 * 17 15 4 43 43 H 1.09008 * 111.00143 * 159.06396 * 17 15 4 44 44 H 1.08996 * 110.36737 * 204.15062 * 18 17 15 45 45 H 1.09004 * 110.36199 * 81.83647 * 18 17 15 46 46 H 0.97002 * 119.99655 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.88492 * 239.52535 * 28 19 18 48 48 H 1.08996 * 109.88150 * 118.35646 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.4422 -1.1663 6 8 5.3887 1.5342 -1.1679 7 6 3.4308 1.3277 -2.4692 8 7 4.3823 1.3515 -3.5829 9 7 4.8360 2.4896 -4.2638 10 6 5.6648 2.1067 -5.1809 11 7 5.7832 0.7393 -5.1285 12 6 6.6307 -0.0822 -5.9964 13 6 4.9842 0.2818 -4.1437 14 8 4.8366 -0.8823 -3.8167 15 6 4.2370 1.4427 1.2697 16 1 5.3121 1.4093 1.0931 17 6 3.7865 0.2571 2.1634 18 6 2.5090 0.8332 2.8236 19 7 2.8154 2.2556 3.0610 20 6 2.2240 3.0528 4.0042 21 1 2.5194 4.0873 4.0991 22 6 1.2447 2.5314 4.8385 23 7 0.8851 1.2705 4.7232 24 14 0.4373 3.6190 6.1247 25 1 -0.7606 4.2726 5.5391 26 1 0.0303 2.7910 7.2883 27 1 1.4005 4.6582 6.5694 28 6 3.8608 2.6766 2.1167 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 2.7386 2.1643 -2.5653 37 1 2.8735 0.3911 -2.4869 38 1 6.1824 2.7563 -5.8711 39 1 6.0669 -0.3764 -6.8816 40 1 7.5067 0.4922 -6.2977 41 1 6.9490 -0.9733 -5.4555 42 1 3.5529 -0.6202 1.5602 43 1 4.5425 0.0237 2.9132 44 1 2.3078 0.3259 3.7671 45 1 1.6572 0.7359 2.1504 46 1 0.2010 0.9060 5.3064 47 1 4.7343 3.0306 2.6643 48 1 3.4801 3.4676 1.4707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714856421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:23 Heat of formation + Delta-G solvation = 60.993815 kcal Electronic energy + Delta-G solvation = -30903.766122 eV Core-core repulsion = 26804.938551 eV Total energy + Delta-G solvation = -4098.827571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53915 -40.10559 -37.66910 -37.32535 -35.37358 -35.10311 -32.94115 -32.15864 -31.64145 -29.38942 -28.51972 -27.57899 -26.83739 -25.76008 -24.35251 -23.00124 -21.82230 -21.34554 -20.58504 -20.15392 -18.72093 -17.84234 -17.48956 -17.01648 -16.63346 -16.26269 -15.85333 -15.64702 -14.95835 -14.88794 -14.67683 -14.46767 -13.98402 -13.75317 -13.44323 -13.30480 -13.07496 -13.00137 -12.63008 -12.51255 -12.26580 -12.01936 -11.95670 -11.78863 -11.61122 -11.44852 -11.30946 -11.01647 -10.88034 -10.70535 -10.61156 -10.38850 -10.23705 -10.18359 -10.10648 -9.86147 -9.56132 -9.45784 -8.66758 -8.63397 -8.29771 -6.84883 -5.67515 -3.09035 1.52768 1.81320 2.56307 2.71750 2.90639 3.30122 3.38391 3.44305 3.45654 4.22069 4.47192 4.50812 4.53051 4.72437 4.89469 4.97153 5.16512 5.18823 5.21038 5.28020 5.43244 5.46500 5.50433 5.58220 5.64620 5.68471 5.76089 5.88236 5.92190 5.97879 6.11195 6.25876 6.31341 6.34097 6.38478 6.43190 6.52686 6.63135 6.68978 6.74873 7.03860 7.45785 7.49199 7.61157 7.66982 7.83789 7.92190 8.32097 8.34687 9.20008 9.80324 10.44968 11.35730 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.002833 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.220300 B = 9881.330427 C =10232.128212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.094 3.906 4 N -0.586 5.586 5 C 0.499 3.501 6 O -0.537 6.537 7 C 0.144 3.856 8 N -0.435 5.435 9 N -0.271 5.271 10 C 0.251 3.749 11 N -0.563 5.563 12 C 0.100 3.900 13 C 0.652 3.348 14 O -0.552 6.552 15 C 0.128 3.872 16 H 0.097 0.903 17 C -0.159 4.159 18 C 0.138 3.862 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.128 3.872 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.231 0.769 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.034 0.966 46 H 0.251 0.749 47 H 0.032 0.968 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -1.436 -21.896 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.028 4.028 4 N -0.318 5.318 5 C 0.284 3.716 6 O -0.414 6.414 7 C 0.018 3.982 8 N -0.255 5.255 9 N -0.092 5.092 10 C -0.048 4.048 11 N -0.292 5.292 12 C -0.042 4.042 13 C 0.351 3.649 14 O -0.425 6.425 15 C 0.024 3.976 16 H 0.115 0.885 17 C -0.198 4.198 18 C 0.014 3.986 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.001 3.999 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.247 0.753 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.809 -1.443 -20.983 21.820 hybrid contribution -0.049 0.067 0.311 0.322 sum 5.761 -1.375 -20.671 21.503 Atomic orbital electron populations 1.21677 0.95012 1.01725 1.02160 1.22209 0.96561 0.97043 1.02942 1.22029 0.78602 0.97641 1.04558 1.47891 1.07108 1.71612 1.05177 1.20749 0.88305 0.76994 0.85525 1.90681 1.14009 1.49690 1.87043 1.21373 0.88945 1.06452 0.81381 1.48257 1.42375 1.03541 1.31326 1.76980 1.14791 1.10190 1.07212 1.25890 0.97285 0.83321 0.98293 1.45851 1.41957 1.07881 1.33512 1.21800 0.93402 0.95711 0.93251 1.16649 0.81312 0.85622 0.81300 1.91086 1.68333 1.14951 1.68173 1.22137 0.96305 0.97177 0.81950 0.88464 1.23451 1.01685 0.96399 0.98281 1.22300 0.90790 0.84582 1.00922 1.44536 1.42566 1.08038 1.37760 1.19058 1.14690 0.92754 1.08453 0.90594 1.24754 0.99410 0.96494 0.99842 1.69798 1.33902 1.12103 1.41101 0.86096 0.79273 0.79192 0.81063 1.21688 1.21725 1.20795 1.21625 0.92771 0.94079 0.91425 0.92759 0.91447 0.93291 0.92858 0.89516 0.86699 0.91570 0.85896 0.85782 0.75323 0.90940 0.89361 0.89446 0.91670 0.91147 0.87805 0.94817 0.93777 0.95024 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.89 37.16 0.37 -1.57 16 2 C -0.15 -2.12 5.09 -26.73 -0.14 -2.26 16 3 C 0.09 1.43 4.26 -4.04 -0.02 1.42 16 4 N -0.59 -9.88 2.45 -164.03 -0.40 -10.28 16 5 C 0.50 8.52 7.73 -10.98 -0.08 8.44 16 6 O -0.54 -11.09 15.82 5.56 0.09 -11.00 16 7 C 0.14 1.95 5.54 -5.19 -0.03 1.93 16 8 N -0.44 -6.30 3.11 -66.31 -0.21 -6.51 16 9 N -0.27 -3.36 12.53 29.87 0.37 -2.98 16 10 C 0.25 2.09 12.66 -89.12 -1.13 0.96 16 11 N -0.56 -5.72 3.14 -130.11 -0.41 -6.13 16 12 C 0.10 0.57 11.05 59.85 0.66 1.23 16 13 C 0.65 9.79 8.60 -86.73 -0.75 9.05 16 14 O -0.55 -10.07 17.71 5.08 0.09 -9.98 16 15 C 0.13 2.42 3.58 -66.10 -0.24 2.18 16 16 H 0.10 1.90 7.01 -51.93 -0.36 1.54 16 17 C -0.16 -3.05 6.09 -24.58 -0.15 -3.20 16 18 C 0.14 3.13 4.65 -2.53 -0.01 3.12 16 19 N -0.60 -14.69 2.97 -170.08 -0.51 -15.20 16 20 C -0.22 -5.95 10.27 -15.06 -0.15 -6.10 16 21 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -25.60 10.09 55.49 0.56 -25.04 16 24 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.13 2.71 6.25 -3.06 -0.02 2.69 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.69 6.94 -51.93 -0.36 0.33 16 33 H 0.09 1.41 4.34 -51.92 -0.23 1.18 16 34 H 0.11 2.15 5.18 -51.93 -0.27 1.88 16 35 H 0.07 0.81 6.48 -51.93 -0.34 0.48 16 36 H 0.12 1.35 7.25 -51.93 -0.38 0.97 16 37 H 0.12 1.55 6.90 -51.93 -0.36 1.19 16 38 H 0.23 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.06 1.16 6.44 -51.93 -0.33 0.83 16 43 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 44 H 0.10 2.73 5.87 -51.93 -0.30 2.42 16 45 H 0.03 0.75 3.98 -51.93 -0.21 0.55 16 46 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -36.36 377.52 -8.42 -44.78 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.90 Total: 2.55 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: -1.78 Total: 17.52 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.59 Total: -66.14 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.18 Total: -20.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.36 -8.42 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.776 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds