Wall clock time and date at job start Tue Mar 31 2020 21:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47344 * 2 1 4 4 N 1.46500 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00018 * 89.99655 * 4 3 2 6 6 O 1.21278 * 120.00330 * 174.97709 * 5 4 3 7 7 C 1.50704 * 120.00150 * 354.97864 * 5 4 3 8 8 N 1.46499 * 109.47179 * 179.97438 * 7 5 4 9 9 N 1.40170 * 126.34989 * 269.99949 * 8 7 5 10 10 C 1.29400 * 108.14092 * 180.02562 * 9 8 7 11 11 N 1.37359 * 108.82841 * 359.73958 * 10 9 8 12 12 C 1.46503 * 125.83516 * 180.30212 * 11 10 9 13 13 C 1.34817 * 108.33495 * 0.43150 * 11 10 9 14 14 O 1.21816 * 126.30629 * 179.84057 * 13 11 10 15 15 C 1.46502 * 119.99993 * 269.99902 * 4 3 2 16 16 H 1.09001 * 110.63869 * 178.12597 * 15 4 3 17 17 C 1.55156 * 110.71829 * 54.79216 * 15 4 3 18 18 C 1.54909 * 101.58014 * 277.13500 * 17 15 4 19 19 N 1.47419 * 104.83631 * 322.99584 * 18 17 15 20 20 C 1.36934 * 125.65118 * 204.09523 * 19 18 17 21 21 H 1.08003 * 120.00349 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00112 * 0.03280 * 20 19 18 23 23 N 1.31625 * 119.99572 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00421 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47421 * 90.00215 * 24 22 20 26 26 H 1.48495 * 109.47216 * 210.00406 * 24 22 20 27 27 H 1.48505 * 109.46827 * 330.00266 * 24 22 20 28 28 C 1.47028 * 108.70352 * 24.12461 * 19 18 17 29 29 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47172 * 300.00122 * 1 2 3 31 31 H 1.08994 * 109.47460 * 60.00144 * 1 2 3 32 32 H 1.09000 * 109.47048 * 239.99343 * 2 1 3 33 33 H 1.09010 * 109.47138 * 119.99666 * 2 1 3 34 34 H 1.08999 * 109.47085 * 59.99825 * 3 2 1 35 35 H 1.08996 * 109.46632 * 299.99770 * 3 2 1 36 36 H 1.09003 * 109.47059 * 59.99811 * 7 5 4 37 37 H 1.09001 * 109.47007 * 300.00184 * 7 5 4 38 38 H 1.07995 * 125.58816 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.46838 * 270.14937 * 12 11 10 40 40 H 1.08998 * 109.46613 * 30.15474 * 12 11 10 41 41 H 1.08998 * 109.47026 * 150.15015 * 12 11 10 42 42 H 1.08995 * 111.00943 * 35.21300 * 17 15 4 43 43 H 1.09008 * 111.00143 * 159.06396 * 17 15 4 44 44 H 1.08996 * 110.36737 * 204.15062 * 18 17 15 45 45 H 1.09004 * 110.36199 * 81.83647 * 18 17 15 46 46 H 0.97002 * 119.99655 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.88492 * 239.52535 * 28 19 18 48 48 H 1.08996 * 109.88150 * 118.35646 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.4422 -1.1663 6 8 5.3887 1.5342 -1.1679 7 6 3.4308 1.3277 -2.4692 8 7 4.3823 1.3515 -3.5829 9 7 4.8360 2.4896 -4.2638 10 6 5.6648 2.1067 -5.1809 11 7 5.7832 0.7393 -5.1285 12 6 6.6307 -0.0822 -5.9964 13 6 4.9842 0.2818 -4.1437 14 8 4.8366 -0.8823 -3.8167 15 6 4.2370 1.4427 1.2697 16 1 5.3121 1.4093 1.0931 17 6 3.7865 0.2571 2.1634 18 6 2.5090 0.8332 2.8236 19 7 2.8154 2.2556 3.0610 20 6 2.2240 3.0528 4.0042 21 1 2.5194 4.0873 4.0991 22 6 1.2447 2.5314 4.8385 23 7 0.8851 1.2705 4.7232 24 14 0.4373 3.6190 6.1247 25 1 -0.7606 4.2726 5.5391 26 1 0.0303 2.7910 7.2883 27 1 1.4005 4.6582 6.5694 28 6 3.8608 2.6766 2.1167 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 2.7386 2.1643 -2.5653 37 1 2.8735 0.3911 -2.4869 38 1 6.1824 2.7563 -5.8711 39 1 6.0669 -0.3764 -6.8816 40 1 7.5067 0.4922 -6.2977 41 1 6.9490 -0.9733 -5.4555 42 1 3.5529 -0.6202 1.5602 43 1 4.5425 0.0237 2.9132 44 1 2.3078 0.3259 3.7671 45 1 1.6572 0.7359 2.1504 46 1 0.2010 0.9060 5.3064 47 1 4.7343 3.0306 2.6643 48 1 3.4801 3.4676 1.4707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714856421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:23 Heat of formation + Delta-G solvation = 38.032783 kcal Electronic energy + Delta-G solvation = -30904.761787 eV Core-core repulsion = 26804.938551 eV Total energy + Delta-G solvation = -4099.823236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.42047 -41.51972 -39.22047 -38.41646 -36.64432 -36.23487 -34.53359 -33.51712 -32.81628 -31.15658 -29.69282 -28.91119 -27.68890 -27.20118 -26.12901 -23.92600 -22.90224 -22.48292 -21.98446 -21.87111 -20.12693 -19.01703 -18.89256 -18.50795 -17.76764 -17.19438 -17.03151 -16.80157 -16.65980 -16.18708 -15.96773 -15.66649 -15.49818 -14.99940 -14.67266 -14.43141 -14.34392 -14.04775 -13.74411 -13.57669 -13.48567 -13.46547 -13.36712 -13.05993 -12.97689 -12.90165 -12.81736 -12.64846 -12.63131 -12.08503 -12.00327 -11.89678 -11.77987 -11.57895 -11.42849 -11.41900 -11.32299 -10.72455 -10.63226 -9.73795 -9.65381 -8.83791 -7.73438 -5.16941 0.64316 1.09439 1.40511 1.49142 1.49882 1.54612 1.58332 1.91650 2.28507 2.51409 3.29918 3.36461 3.42733 3.70327 3.83213 3.90151 3.99295 4.03251 4.09061 4.12940 4.18705 4.25423 4.37544 4.43943 4.54145 4.60187 4.61653 4.66115 4.78210 4.80134 4.86754 4.89272 4.93947 4.98166 4.99665 5.06273 5.21960 5.34659 5.42080 5.51390 5.57926 5.69123 5.74116 5.86346 6.32864 6.35151 6.60980 6.90231 6.99814 7.14938 7.80088 8.44358 9.27239 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.002833 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.220300 B = 9881.330427 C =10232.128212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.144 4.144 3 C 0.098 3.902 4 N -0.584 5.584 5 C 0.498 3.502 6 O -0.577 6.577 7 C 0.146 3.854 8 N -0.446 5.446 9 N -0.313 5.313 10 C 0.279 3.721 11 N -0.559 5.559 12 C 0.092 3.908 13 C 0.631 3.369 14 O -0.599 6.599 15 C 0.139 3.861 16 H 0.093 0.907 17 C -0.145 4.145 18 C 0.147 3.853 19 N -0.617 5.617 20 C -0.237 4.237 21 H 0.075 0.925 22 C -0.058 4.058 23 N -0.940 5.940 24 Si 0.975 3.025 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.276 1.276 28 C 0.131 3.869 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.291 0.709 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.247 0.753 47 H 0.027 0.973 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -0.447 -24.794 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C -0.024 4.024 4 N -0.316 5.316 5 C 0.286 3.714 6 O -0.456 6.456 7 C 0.021 3.979 8 N -0.265 5.265 9 N -0.134 5.134 10 C -0.018 4.018 11 N -0.286 5.286 12 C -0.048 4.048 13 C 0.330 3.670 14 O -0.476 6.476 15 C 0.035 3.965 16 H 0.111 0.889 17 C -0.184 4.184 18 C 0.023 3.977 19 N -0.344 5.344 20 C -0.365 4.365 21 H 0.093 0.907 22 C -0.251 4.251 23 N -0.590 5.590 24 Si 0.804 3.196 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.201 1.201 28 C 0.005 3.995 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.306 0.694 39 H 0.110 0.890 40 H 0.149 0.851 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.140 -0.427 -23.931 24.710 hybrid contribution -0.056 -0.209 1.112 1.133 sum 6.084 -0.636 -22.819 23.625 Atomic orbital electron populations 1.21623 0.94004 1.02339 1.01994 1.22123 0.97338 0.96146 1.02573 1.22052 0.77412 0.98373 1.04574 1.47901 1.07721 1.71424 1.04519 1.21400 0.87994 0.75634 0.86400 1.90653 1.15872 1.51470 1.87635 1.21438 0.88844 1.08174 0.79402 1.48376 1.42538 1.04190 1.31378 1.77000 1.17478 1.09662 1.09222 1.27140 0.94910 0.82825 0.96967 1.46125 1.40981 1.09019 1.32514 1.22177 0.94563 0.95389 0.92662 1.17058 0.82149 0.85284 0.82463 1.91028 1.70006 1.16723 1.69846 1.21838 0.96287 0.95664 0.82733 0.88904 1.23297 0.99885 0.96996 0.98258 1.22083 0.92525 0.83698 0.99372 1.44710 1.43062 1.08621 1.37980 1.19331 1.14963 0.93138 1.09114 0.90728 1.25482 1.00165 0.97749 1.01697 1.70031 1.34065 1.13272 1.41593 0.85137 0.78353 0.77641 0.78499 1.21251 1.22170 1.20106 1.21642 0.91692 0.95067 0.91123 0.91813 0.94304 0.90654 0.91005 0.91985 0.90162 0.87964 0.83059 0.84664 0.69392 0.89002 0.85139 0.91446 0.90081 0.91366 0.91515 0.94419 0.94356 0.95475 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.82 16 2 C -0.14 -3.94 5.09 30.59 0.16 -3.78 16 3 C 0.10 2.89 4.26 86.38 0.37 3.25 16 4 N -0.58 -19.42 2.45 -791.25 -1.94 -21.35 16 5 C 0.50 16.64 7.73 87.66 0.68 17.32 16 6 O -0.58 -23.76 15.82 -3.02 -0.05 -23.81 16 7 C 0.15 3.74 5.54 85.63 0.47 4.22 16 8 N -0.45 -12.26 3.11 -481.77 -1.50 -13.76 16 9 N -0.31 -6.97 12.53 -59.42 -0.74 -7.71 16 10 C 0.28 3.59 12.66 179.82 2.28 5.86 16 11 N -0.56 -9.93 3.14 -683.69 -2.15 -12.08 16 12 C 0.09 0.78 11.05 127.77 1.41 2.19 16 13 C 0.63 18.36 8.60 178.99 1.54 19.90 16 14 O -0.60 -21.96 17.71 -4.72 -0.08 -22.04 16 15 C 0.14 5.32 3.58 46.18 0.17 5.49 16 16 H 0.09 3.68 7.01 -2.39 -0.02 3.66 16 17 C -0.15 -5.68 6.09 31.99 0.19 -5.49 16 18 C 0.15 6.89 4.65 86.86 0.40 7.29 16 19 N -0.62 -30.88 2.97 -692.00 -2.06 -32.93 16 20 C -0.24 -12.97 10.27 84.03 0.86 -12.11 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 23 N -0.94 -53.72 10.09 21.65 0.22 -53.50 16 24 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 C 0.13 5.65 6.25 86.73 0.54 6.19 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.18 8.11 -2.39 -0.02 1.16 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.72 6.94 -2.39 -0.02 1.71 16 33 H 0.06 2.01 4.34 -2.38 -0.01 2.00 16 34 H 0.08 3.01 5.18 -2.39 -0.01 3.00 16 35 H 0.10 2.26 6.48 -2.39 -0.02 2.24 16 36 H 0.15 2.90 7.25 -2.39 -0.02 2.89 16 37 H 0.14 3.12 6.90 -2.39 -0.02 3.10 16 38 H 0.29 -0.42 8.06 -2.91 -0.02 -0.44 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 42 H 0.08 2.91 6.44 -2.39 -0.02 2.90 16 43 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 44 H 0.07 3.66 5.87 -2.39 -0.01 3.64 16 45 H 0.04 1.74 3.98 -2.38 -0.01 1.73 16 46 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 47 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.03 1.14 8.04 -2.39 -0.02 1.12 16 Total: -1.00 -83.50 377.52 4.96 -78.54 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.99 Total: 16.89 kcal Atomic # 6 Polarization: 34.55 SS G_CDS: 10.25 Total: 44.80 kcal Atomic # 7 Polarization: -133.18 SS G_CDS: -8.17 Total: -141.34 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.13 Total: -45.85 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -83.50 4.96 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.571 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds