Wall clock time and date at job start Tue Mar 31 2020 21:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 N 1.46495 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99734 * 90.00390 * 4 3 2 6 6 O 1.21287 * 119.99628 * 180.02562 * 5 4 3 7 7 C 1.50697 * 120.00267 * 359.97438 * 5 4 3 8 8 N 1.46496 * 109.47161 * 180.02562 * 7 5 4 9 9 N 1.40177 * 126.34683 * 270.02473 * 8 7 5 10 10 C 1.29404 * 108.13718 * 179.97438 * 9 8 7 11 11 N 1.37358 * 108.83252 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.83144 * 179.97438 * 11 10 9 13 13 C 1.34819 * 108.33069 * 359.97438 * 11 10 9 14 14 O 1.21816 * 126.29620 * 180.02562 * 13 11 10 15 15 C 1.46501 * 120.00329 * 269.99531 * 4 3 2 16 16 H 1.09000 * 110.88424 * 356.12723 * 15 4 3 17 17 C 1.55154 * 110.99928 * 120.00116 * 15 4 3 18 18 C 1.54324 * 102.94018 * 153.58390 * 17 15 4 19 19 N 1.47019 * 107.26906 * 337.80217 * 18 17 15 20 20 C 1.36943 * 125.65108 * 178.91899 * 19 18 17 21 21 H 1.07991 * 120.00339 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99487 * 0.03047 * 20 19 18 23 23 N 1.31618 * 120.00261 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99694 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47271 * 59.99824 * 24 22 20 26 26 H 1.48498 * 109.47076 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46875 * 299.99947 * 24 22 20 28 28 C 1.47420 * 108.70495 * 358.94630 * 19 18 17 29 29 H 1.08995 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47199 * 300.00668 * 1 2 3 31 31 H 1.09005 * 109.46957 * 59.99655 * 1 2 3 32 32 H 1.09000 * 109.46875 * 240.00040 * 2 1 3 33 33 H 1.09001 * 109.46784 * 119.99598 * 2 1 3 34 34 H 1.08997 * 109.47146 * 59.99729 * 3 2 1 35 35 H 1.08999 * 109.47071 * 300.00009 * 3 2 1 36 36 H 1.08995 * 109.46836 * 60.00038 * 7 5 4 37 37 H 1.09004 * 109.47124 * 300.00238 * 7 5 4 38 38 H 1.08000 * 125.57939 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47153 * 0.02562 * 12 11 10 40 40 H 1.08993 * 109.47019 * 120.02313 * 12 11 10 41 41 H 1.08999 * 109.46712 * 240.02014 * 12 11 10 42 42 H 1.09006 * 110.72422 * 271.93934 * 17 15 4 43 43 H 1.08996 * 110.72663 * 35.03872 * 17 15 4 44 44 H 1.08993 * 109.88625 * 97.22424 * 18 17 15 45 45 H 1.09005 * 109.88193 * 218.39281 * 18 17 15 46 46 H 0.96998 * 119.99579 * 179.97438 * 23 22 20 47 47 H 1.09002 * 110.37020 * 265.28468 * 28 19 18 48 48 H 1.09000 * 110.37211 * 142.96639 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.4424 -1.1664 6 8 5.3922 1.4419 -1.1658 7 6 3.4264 1.4417 -2.4718 8 7 4.3788 1.4411 -3.5849 9 7 4.9193 2.5698 -4.2164 10 6 5.7188 2.1649 -5.1499 11 7 5.7278 0.7914 -5.1610 12 6 6.5057 -0.0538 -6.0704 13 6 4.8986 0.3540 -4.1922 14 8 4.6623 -0.8086 -3.9158 15 6 4.2370 1.4428 1.2696 16 1 3.5510 1.5118 2.1139 17 6 5.1422 0.1883 1.3896 18 6 6.2650 0.6617 2.3365 19 7 6.3047 2.1297 2.2669 20 6 7.1509 2.9399 2.9761 21 1 7.1008 4.0117 2.8541 22 6 8.0730 2.3832 3.8518 23 7 8.1338 1.0769 4.0007 24 14 9.2278 3.4882 4.8187 25 1 8.4336 4.4088 5.6714 26 1 10.1076 2.6547 5.6768 27 1 10.0596 4.2797 3.8770 28 6 5.2823 2.5853 1.3075 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.7995 2.3314 -2.5300 37 1 2.8000 0.5515 -2.5295 38 1 6.2854 2.8025 -5.8123 39 1 7.0846 0.5760 -6.7459 40 1 7.1817 -0.6836 -5.4921 41 1 5.8296 -0.6826 -6.6496 42 1 4.5921 -0.6436 1.8295 43 1 5.5464 -0.0901 0.4165 44 1 6.0481 0.3447 3.3565 45 1 7.2209 0.2494 2.0133 46 1 8.7784 0.6880 4.6123 47 1 5.7241 2.7281 0.3214 48 1 4.8212 3.5099 1.6549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714856422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:28 Heat of formation + Delta-G solvation = 57.157283 kcal Electronic energy + Delta-G solvation = -30729.006092 eV Core-core repulsion = 26630.012156 eV Total energy + Delta-G solvation = -4098.993936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48084 -40.07843 -37.27798 -36.88646 -35.97050 -35.25895 -33.00517 -32.14726 -31.56602 -29.21195 -28.52018 -27.46644 -26.80694 -25.74404 -24.32422 -22.91008 -22.05817 -21.45822 -20.82479 -19.93744 -18.87941 -17.75504 -17.28502 -16.80630 -16.43888 -16.22238 -15.96428 -15.52232 -14.95672 -14.72734 -14.61262 -14.41650 -14.22601 -13.83454 -13.59221 -13.36628 -13.03682 -12.95978 -12.59482 -12.52096 -12.37577 -12.30672 -12.09081 -11.98336 -11.77255 -11.63171 -11.41249 -10.88664 -10.83628 -10.76927 -10.59194 -10.52017 -10.31607 -10.14058 -10.03746 -9.82014 -9.56273 -9.14613 -8.56560 -8.51567 -8.29436 -6.65521 -5.58632 -2.91009 1.57285 1.87870 2.61942 2.76889 2.95022 3.22333 3.47816 3.51444 3.53302 4.23854 4.42469 4.57876 4.61493 4.70124 4.73584 4.86262 4.97778 5.00086 5.11743 5.23249 5.26526 5.26908 5.44351 5.50686 5.53544 5.63782 5.67361 5.69922 5.85806 5.87389 5.92567 5.94540 5.99733 6.14626 6.29339 6.39590 6.57315 6.67613 6.74686 6.82159 7.29599 7.51259 7.59339 7.68647 7.79728 7.94962 7.97520 8.37073 8.41991 9.34530 9.95187 10.62703 11.53064 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003631 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.635563 B = 7708.777190 C = 9474.289219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.106 3.894 4 N -0.601 5.601 5 C 0.492 3.508 6 O -0.498 6.498 7 C 0.144 3.856 8 N -0.436 5.436 9 N -0.272 5.272 10 C 0.254 3.746 11 N -0.562 5.562 12 C 0.103 3.897 13 C 0.653 3.347 14 O -0.552 6.552 15 C 0.133 3.867 16 H 0.092 0.908 17 C -0.152 4.152 18 C 0.186 3.814 19 N -0.602 5.602 20 C -0.223 4.223 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.125 3.875 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.041 0.959 46 H 0.251 0.749 47 H 0.048 0.952 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 -0.267 -20.351 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C -0.018 4.018 4 N -0.335 5.335 5 C 0.277 3.723 6 O -0.372 6.372 7 C 0.018 3.982 8 N -0.256 5.256 9 N -0.093 5.093 10 C -0.046 4.046 11 N -0.291 5.291 12 C -0.039 4.039 13 C 0.352 3.648 14 O -0.425 6.425 15 C 0.030 3.970 16 H 0.110 0.890 17 C -0.191 4.191 18 C 0.061 3.939 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.247 0.753 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.058 -0.334 -19.462 24.011 hybrid contribution 0.986 -0.070 0.254 1.021 sum -13.072 -0.404 -19.208 23.238 Atomic orbital electron populations 1.21704 0.95108 1.02003 1.01870 1.22028 0.96020 0.97222 1.03320 1.21731 0.79718 0.96971 1.03347 1.47940 1.06099 1.73524 1.05966 1.20723 0.88688 0.77721 0.85161 1.90789 1.13273 1.46602 1.86507 1.21345 0.88939 1.06016 0.81874 1.48204 1.42627 1.03227 1.31525 1.76980 1.13371 1.10561 1.08348 1.25914 0.97925 0.82895 0.97820 1.45850 1.42405 1.07438 1.33425 1.21785 0.95344 0.94676 0.92145 1.16624 0.81399 0.85540 0.81228 1.91081 1.66549 1.15231 1.69663 1.22434 0.93347 0.98388 0.82869 0.88988 1.23210 0.98307 0.95892 1.01689 1.21032 0.93955 0.83510 0.95395 1.44310 1.38962 1.02206 1.47379 1.19007 1.10500 0.89285 1.16348 0.90641 1.24787 0.99686 0.95954 1.00180 1.69968 1.38398 1.08621 1.40118 0.86199 0.80654 0.79257 0.79651 1.21258 1.21652 1.21273 1.21909 0.89593 0.93523 0.95171 0.92474 0.92436 0.92668 0.91728 0.90982 0.89759 0.90698 0.86147 0.86219 0.75321 0.88893 0.90417 0.90583 0.92731 0.91148 0.93774 0.94127 0.93850 0.93426 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.15 -1.39 6.26 -26.73 -0.17 -1.55 16 3 C 0.11 1.05 5.21 -4.04 -0.02 1.03 16 4 N -0.60 -9.04 2.56 -163.68 -0.42 -9.46 16 5 C 0.49 8.27 7.02 -10.98 -0.08 8.19 16 6 O -0.50 -10.99 12.47 5.55 0.07 -10.92 16 7 C 0.14 1.83 5.42 -5.20 -0.03 1.80 16 8 N -0.44 -6.35 3.11 -66.31 -0.21 -6.56 16 9 N -0.27 -3.50 12.53 29.87 0.37 -3.13 16 10 C 0.25 2.32 12.61 -89.12 -1.12 1.19 16 11 N -0.56 -6.18 3.14 -130.11 -0.41 -6.59 16 12 C 0.10 0.68 11.08 59.85 0.66 1.35 16 13 C 0.65 10.13 8.60 -86.74 -0.75 9.39 16 14 O -0.55 -10.30 17.76 5.09 0.09 -10.21 16 15 C 0.13 2.51 3.55 -65.79 -0.23 2.28 16 16 H 0.09 1.60 7.86 -51.93 -0.41 1.20 16 17 C -0.15 -3.27 6.33 -24.90 -0.16 -3.43 16 18 C 0.19 4.99 5.37 -3.07 -0.02 4.97 16 19 N -0.60 -16.80 3.39 -170.08 -0.58 -17.37 16 20 C -0.22 -6.65 10.28 -15.05 -0.15 -6.81 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -28.64 10.31 55.49 0.57 -28.07 16 24 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.12 2.91 6.58 -2.54 -0.02 2.89 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.65 7.22 -51.93 -0.37 0.28 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 35 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 36 H 0.12 1.13 7.40 -51.93 -0.38 0.75 16 37 H 0.12 1.32 7.15 -51.93 -0.37 0.95 16 38 H 0.23 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.09 0.25 8.07 -51.93 -0.42 -0.17 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.65 6.25 -51.93 -0.32 1.32 16 44 H 0.04 1.26 7.38 -51.93 -0.38 0.88 16 45 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 46 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.05 1.22 5.53 -51.93 -0.29 0.93 16 48 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -41.49 387.96 -8.93 -50.42 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.44 Total: -2.32 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: -1.81 Total: 20.21 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -0.67 Total: -71.18 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.16 Total: -21.13 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -41.49 -8.93 -50.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.576 kcal (2) G-P(sol) polarization free energy of solvation -41.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds