Wall clock time and date at job start Tue Mar 31 2020 21:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 N 1.46495 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99734 * 90.00390 * 4 3 2 6 6 O 1.21287 * 119.99628 * 180.02562 * 5 4 3 7 7 C 1.50697 * 120.00267 * 359.97438 * 5 4 3 8 8 N 1.46496 * 109.47161 * 180.02562 * 7 5 4 9 9 N 1.40177 * 126.34683 * 270.02473 * 8 7 5 10 10 C 1.29404 * 108.13718 * 179.97438 * 9 8 7 11 11 N 1.37358 * 108.83252 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.83144 * 179.97438 * 11 10 9 13 13 C 1.34819 * 108.33069 * 359.97438 * 11 10 9 14 14 O 1.21816 * 126.29620 * 180.02562 * 13 11 10 15 15 C 1.46501 * 120.00329 * 269.99531 * 4 3 2 16 16 H 1.09000 * 110.88424 * 356.12723 * 15 4 3 17 17 C 1.55154 * 110.99928 * 120.00116 * 15 4 3 18 18 C 1.54324 * 102.94018 * 153.58390 * 17 15 4 19 19 N 1.47019 * 107.26906 * 337.80217 * 18 17 15 20 20 C 1.36943 * 125.65108 * 178.91899 * 19 18 17 21 21 H 1.07991 * 120.00339 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99487 * 0.03047 * 20 19 18 23 23 N 1.31618 * 120.00261 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99694 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47271 * 59.99824 * 24 22 20 26 26 H 1.48498 * 109.47076 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46875 * 299.99947 * 24 22 20 28 28 C 1.47420 * 108.70495 * 358.94630 * 19 18 17 29 29 H 1.08995 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47199 * 300.00668 * 1 2 3 31 31 H 1.09005 * 109.46957 * 59.99655 * 1 2 3 32 32 H 1.09000 * 109.46875 * 240.00040 * 2 1 3 33 33 H 1.09001 * 109.46784 * 119.99598 * 2 1 3 34 34 H 1.08997 * 109.47146 * 59.99729 * 3 2 1 35 35 H 1.08999 * 109.47071 * 300.00009 * 3 2 1 36 36 H 1.08995 * 109.46836 * 60.00038 * 7 5 4 37 37 H 1.09004 * 109.47124 * 300.00238 * 7 5 4 38 38 H 1.08000 * 125.57939 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47153 * 0.02562 * 12 11 10 40 40 H 1.08993 * 109.47019 * 120.02313 * 12 11 10 41 41 H 1.08999 * 109.46712 * 240.02014 * 12 11 10 42 42 H 1.09006 * 110.72422 * 271.93934 * 17 15 4 43 43 H 1.08996 * 110.72663 * 35.03872 * 17 15 4 44 44 H 1.08993 * 109.88625 * 97.22424 * 18 17 15 45 45 H 1.09005 * 109.88193 * 218.39281 * 18 17 15 46 46 H 0.96998 * 119.99579 * 179.97438 * 23 22 20 47 47 H 1.09002 * 110.37020 * 265.28468 * 28 19 18 48 48 H 1.09000 * 110.37211 * 142.96639 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.4424 -1.1664 6 8 5.3922 1.4419 -1.1658 7 6 3.4264 1.4417 -2.4718 8 7 4.3788 1.4411 -3.5849 9 7 4.9193 2.5698 -4.2164 10 6 5.7188 2.1649 -5.1499 11 7 5.7278 0.7914 -5.1610 12 6 6.5057 -0.0538 -6.0704 13 6 4.8986 0.3540 -4.1922 14 8 4.6623 -0.8086 -3.9158 15 6 4.2370 1.4428 1.2696 16 1 3.5510 1.5118 2.1139 17 6 5.1422 0.1883 1.3896 18 6 6.2650 0.6617 2.3365 19 7 6.3047 2.1297 2.2669 20 6 7.1509 2.9399 2.9761 21 1 7.1008 4.0117 2.8541 22 6 8.0730 2.3832 3.8518 23 7 8.1338 1.0769 4.0007 24 14 9.2278 3.4882 4.8187 25 1 8.4336 4.4088 5.6714 26 1 10.1076 2.6547 5.6768 27 1 10.0596 4.2797 3.8770 28 6 5.2823 2.5853 1.3075 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.7995 2.3314 -2.5300 37 1 2.8000 0.5515 -2.5295 38 1 6.2854 2.8025 -5.8123 39 1 7.0846 0.5760 -6.7459 40 1 7.1817 -0.6836 -5.4921 41 1 5.8296 -0.6826 -6.6496 42 1 4.5921 -0.6436 1.8295 43 1 5.5464 -0.0901 0.4165 44 1 6.0481 0.3447 3.3565 45 1 7.2209 0.2494 2.0133 46 1 8.7784 0.6880 4.6123 47 1 5.7241 2.7281 0.3214 48 1 4.8212 3.5099 1.6549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714856422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:27 Heat of formation + Delta-G solvation = 28.496161 kcal Electronic energy + Delta-G solvation = -30730.248931 eV Core-core repulsion = 26630.012156 eV Total energy + Delta-G solvation = -4100.236775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.41646 -41.43359 -38.64698 -38.41210 -37.18490 -36.22875 -34.61889 -33.35614 -32.83568 -31.12519 -29.82703 -28.80825 -27.72362 -26.92533 -26.21396 -23.92750 -23.03678 -22.44825 -22.19491 -21.93711 -20.18145 -18.99005 -18.68789 -18.35877 -17.53977 -17.30008 -17.02563 -16.79333 -16.57223 -16.08130 -15.93272 -15.62825 -15.51221 -15.18540 -14.67084 -14.46484 -14.32557 -14.19099 -13.94052 -13.70717 -13.55373 -13.52449 -13.42544 -13.00980 -12.97204 -12.92895 -12.75282 -12.69193 -12.39351 -12.13666 -12.09630 -12.01891 -11.88685 -11.74271 -11.48864 -11.40851 -11.31408 -10.74146 -10.52166 -9.69302 -9.63843 -8.89045 -7.86879 -5.23682 0.65975 1.09131 1.41854 1.47380 1.51387 1.53472 1.55184 1.92569 2.28226 2.48817 3.28705 3.37166 3.43452 3.66788 3.87220 3.92246 4.00427 4.04526 4.08304 4.11499 4.19741 4.21310 4.38702 4.43714 4.46630 4.57856 4.60844 4.69165 4.73419 4.76727 4.85734 4.89861 4.95512 4.96404 5.03444 5.08603 5.27303 5.30555 5.38461 5.51066 5.58088 5.63919 5.67924 5.71865 6.15007 6.38228 6.60334 6.91417 7.05428 7.14623 7.73035 8.39597 9.23716 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003631 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.635563 B = 7708.777190 C = 9474.289219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.144 4.144 3 C 0.099 3.901 4 N -0.595 5.595 5 C 0.486 3.514 6 O -0.561 6.561 7 C 0.147 3.853 8 N -0.445 5.445 9 N -0.310 5.310 10 C 0.276 3.724 11 N -0.560 5.560 12 C 0.094 3.906 13 C 0.630 3.370 14 O -0.599 6.599 15 C 0.155 3.845 16 H 0.117 0.883 17 C -0.136 4.136 18 C 0.198 3.802 19 N -0.623 5.623 20 C -0.247 4.247 21 H 0.082 0.918 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.986 3.014 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.124 3.876 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.289 0.711 39 H 0.143 0.857 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.021 0.979 45 H -0.010 1.010 46 H 0.247 0.753 47 H 0.026 0.974 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 1.722 -21.929 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C -0.022 4.022 4 N -0.327 5.327 5 C 0.273 3.727 6 O -0.439 6.439 7 C 0.022 3.978 8 N -0.264 5.264 9 N -0.131 5.131 10 C -0.022 4.022 11 N -0.288 5.288 12 C -0.046 4.046 13 C 0.329 3.671 14 O -0.476 6.476 15 C 0.050 3.950 16 H 0.135 0.865 17 C -0.175 4.175 18 C 0.073 3.927 19 N -0.349 5.349 20 C -0.376 4.376 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.813 3.187 25 H -0.195 1.195 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.304 0.696 39 H 0.161 0.839 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.008 0.992 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.001 1.694 -21.089 26.526 hybrid contribution 1.622 -0.679 0.636 1.870 sum -14.379 1.015 -20.453 25.022 Atomic orbital electron populations 1.21665 0.92934 1.02401 1.03111 1.21972 0.97778 0.96455 1.02040 1.22152 0.76081 0.97964 1.05989 1.47967 1.08139 1.72514 1.04061 1.21547 0.88243 0.76127 0.86752 1.90764 1.16141 1.49452 1.87497 1.21517 0.88504 1.08503 0.79245 1.48403 1.42796 1.03541 1.31619 1.76980 1.15714 1.10209 1.10245 1.27139 0.95999 0.82394 0.96634 1.46133 1.41354 1.08655 1.32618 1.22146 0.95218 0.95401 0.91829 1.17078 0.82302 0.85322 0.82373 1.91019 1.68310 1.17008 1.71309 1.22053 0.92837 0.94380 0.85757 0.86495 1.22964 0.97369 0.98024 0.99183 1.20714 0.93473 0.83455 0.95077 1.44627 1.39948 1.02511 1.47832 1.19450 1.11359 0.89989 1.16752 0.90059 1.25752 1.01412 0.97507 1.01404 1.70216 1.38936 1.10525 1.40610 0.85057 0.78252 0.77385 0.78044 1.19520 1.21767 1.20600 1.21967 0.89717 0.95641 0.92890 0.92582 0.91694 0.90912 0.92643 0.92800 0.88065 0.87141 0.82356 0.84629 0.69563 0.83899 0.92106 0.90023 0.90158 0.93365 0.96097 0.99199 0.94374 0.95633 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.14 -2.39 6.26 30.60 0.19 -2.20 16 3 C 0.10 1.67 5.21 86.38 0.45 2.12 16 4 N -0.59 -17.14 2.56 -790.15 -2.02 -19.17 16 5 C 0.49 16.26 7.02 87.66 0.62 16.87 16 6 O -0.56 -25.71 12.47 -3.05 -0.04 -25.75 16 7 C 0.15 3.54 5.42 85.63 0.46 4.01 16 8 N -0.44 -12.71 3.11 -481.80 -1.50 -14.21 16 9 N -0.31 -7.52 12.53 -59.42 -0.74 -8.26 16 10 C 0.28 4.32 12.61 179.82 2.27 6.59 16 11 N -0.56 -11.61 3.14 -683.69 -2.15 -13.76 16 12 C 0.09 1.10 11.08 127.77 1.42 2.52 16 13 C 0.63 19.72 8.60 178.99 1.54 21.26 16 14 O -0.60 -23.21 17.76 -4.72 -0.08 -23.29 16 15 C 0.15 5.78 3.55 46.38 0.16 5.95 16 16 H 0.12 3.84 7.86 -2.39 -0.02 3.82 16 17 C -0.14 -6.07 6.33 31.78 0.20 -5.87 16 18 C 0.20 11.23 5.37 86.73 0.47 11.70 16 19 N -0.62 -36.00 3.39 -692.02 -2.35 -38.35 16 20 C -0.25 -15.10 10.28 84.03 0.86 -14.24 16 21 H 0.08 4.73 7.83 -2.91 -0.02 4.71 16 22 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 23 N -0.95 -61.62 10.31 21.65 0.22 -61.40 16 24 Si 0.99 48.43 29.55 68.60 2.03 50.45 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 28 C 0.12 5.86 6.58 86.85 0.57 6.43 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 1.03 7.22 -2.39 -0.02 1.01 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.44 7.93 -2.39 -0.02 1.42 16 35 H 0.11 1.13 6.44 -2.39 -0.02 1.11 16 36 H 0.16 2.49 7.40 -2.39 -0.02 2.47 16 37 H 0.14 2.80 7.15 -2.39 -0.02 2.78 16 38 H 0.29 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.14 0.19 8.07 -2.39 -0.02 0.17 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 43 H 0.05 2.38 6.25 -2.39 -0.01 2.36 16 44 H 0.02 1.26 7.38 -2.39 -0.02 1.24 16 45 H -0.01 -0.67 7.51 -2.38 -0.02 -0.69 16 46 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.03 1.36 5.53 -2.39 -0.01 1.35 16 48 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -99.40 387.96 4.72 -94.69 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.96 Total: 8.47 kcal Atomic # 6 Polarization: 40.17 SS G_CDS: 10.39 Total: 50.56 kcal Atomic # 7 Polarization: -146.60 SS G_CDS: -8.54 Total: -155.14 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.12 Total: -49.04 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.45 kcal Total: -99.40 4.72 -94.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.185 kcal (2) G-P(sol) polarization free energy of solvation -99.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds