Wall clock time and date at job start Tue Mar 31 2020 20:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.08997 * 109.46917 * 54.63176 * 3 2 1 5 5 C 1.53006 * 109.47071 * 174.62728 * 3 2 1 6 6 N 1.46493 * 109.47001 * 175.00350 * 5 3 2 7 7 C 1.34783 * 119.99705 * 180.02562 * 6 5 3 8 8 O 1.21677 * 120.00364 * 355.23639 * 7 6 5 9 9 C 1.46765 * 119.99872 * 175.24060 * 7 6 5 10 10 C 1.36666 * 126.84830 * 99.11585 * 9 7 6 11 11 C 1.50696 * 126.10109 * 0.02562 * 10 9 7 12 12 N 1.33316 * 107.78824 * 179.89508 * 10 9 7 13 13 C 1.30859 * 109.68455 * 0.38212 * 12 10 9 14 14 N 1.34497 * 109.16571 * 359.76691 * 13 12 10 15 15 C 1.46497 * 126.47328 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47121 * 294.62860 * 3 2 1 17 17 C 1.46898 * 111.00069 * 297.07151 * 16 3 2 18 18 C 1.50703 * 109.47117 * 184.36153 * 17 16 3 19 19 O 1.21288 * 120.00144 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99764 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99961 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99614 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00180 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99885 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00080 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47257 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47271 * 119.99687 * 25 23 21 28 28 H 1.48502 * 109.47037 * 239.99451 * 25 23 21 29 29 H 1.08992 * 109.47560 * 185.40900 * 1 2 3 30 30 H 1.08998 * 109.47332 * 305.41236 * 1 2 3 31 31 H 1.09003 * 109.46823 * 65.40737 * 1 2 3 32 32 H 1.09001 * 109.47285 * 240.00091 * 2 1 3 33 33 H 1.09004 * 109.46695 * 119.99896 * 2 1 3 34 34 H 1.09000 * 109.46889 * 54.99720 * 5 3 2 35 35 H 1.09001 * 109.46866 * 295.00411 * 5 3 2 36 36 H 0.96995 * 120.00303 * 359.97438 * 6 5 3 37 37 H 1.09005 * 109.47625 * 89.99780 * 11 10 9 38 38 H 1.09003 * 109.46713 * 209.99658 * 11 10 9 39 39 H 1.09004 * 109.47661 * 329.99406 * 11 10 9 40 40 H 1.07997 * 125.41569 * 179.77675 * 13 12 10 41 41 H 1.08998 * 109.46673 * 274.89094 * 15 14 13 42 42 H 1.09002 * 109.47355 * 34.89304 * 15 14 13 43 43 H 1.08998 * 109.47308 * 154.89312 * 15 14 13 44 44 H 1.00896 * 111.00318 * 61.03233 * 16 3 2 45 45 H 1.08997 * 109.47373 * 304.37074 * 17 16 3 46 46 H 1.09005 * 109.46800 * 64.36378 * 17 16 3 47 47 H 0.96996 * 120.00148 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99709 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9833 0.8380 5 6 3.5641 1.4445 0.1351 6 7 4.0630 2.8167 0.0155 7 6 5.3853 3.0629 0.1029 8 8 6.1563 2.1595 0.3673 9 6 5.8951 4.4209 -0.1206 10 6 6.2318 5.3377 0.8354 11 6 6.1473 5.1373 2.3266 12 7 6.6511 6.4397 0.2132 13 6 6.5875 6.2657 -1.0822 14 7 6.1245 5.0294 -1.3395 15 6 5.9057 4.4393 -2.6624 16 7 1.6591 2.0965 -1.2589 17 6 2.2913 1.4350 -2.4082 18 6 1.9649 2.1955 -3.6676 19 8 1.2740 3.1909 -3.6132 20 7 2.4407 1.7695 -4.8545 21 6 2.1442 2.4616 -6.0002 22 1 1.5290 3.3480 -5.9516 23 6 2.6351 2.0228 -7.2237 24 7 3.3840 0.9445 -7.2826 25 14 2.2306 2.9654 -8.7848 26 1 1.3766 4.1334 -8.4506 27 1 3.4881 3.4365 -9.4186 28 1 1.5049 2.0755 -9.7265 29 1 -0.3634 -1.0230 0.0969 30 1 -0.3634 0.5955 0.8375 31 1 -0.3633 0.4277 -0.9345 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.8296 -0.6526 35 1 3.8431 1.0399 1.1080 36 1 3.4419 3.5479 -0.1274 37 1 7.0894 4.7290 2.6924 38 1 5.9535 6.0943 2.8112 39 1 5.3378 4.4439 2.5548 40 1 6.8632 6.9983 -1.8263 41 1 4.9204 4.7265 -3.0297 42 1 6.6696 4.7991 -3.3517 43 1 5.9641 3.3533 -2.5900 44 1 0.6559 2.1229 -1.3637 45 1 3.3717 1.4138 -2.2661 46 1 1.9158 0.4151 -2.4920 47 1 2.9934 0.9736 -4.8980 48 1 3.7270 0.6384 -8.1367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715066687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:53 Heat of formation + Delta-G solvation = -15.812866 kcal Electronic energy + Delta-G solvation = -30146.904542 eV Core-core repulsion = 26044.746384 eV Total energy + Delta-G solvation = -4102.158159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20778 -39.64204 -38.57843 -37.33859 -34.48577 -34.19201 -33.95607 -31.91995 -31.42216 -31.26298 -29.15118 -28.08520 -26.69524 -26.03143 -24.43330 -23.81943 -22.24808 -20.72273 -20.53410 -19.72857 -19.15389 -18.03152 -17.62397 -16.91943 -16.43942 -16.02119 -15.57224 -15.51841 -15.20738 -14.99656 -14.44641 -14.33923 -14.17548 -13.94606 -13.86144 -13.55445 -13.54362 -13.21069 -13.05113 -12.67140 -12.61133 -12.41750 -12.33092 -12.24213 -12.02860 -11.86019 -11.59893 -11.45626 -11.17665 -10.93379 -10.90085 -10.49232 -10.42866 -10.31865 -9.89545 -9.61699 -9.61450 -9.11032 -8.60746 -8.42364 -8.18387 -8.06285 -6.51348 -3.92773 1.67203 2.19304 2.85951 2.95673 3.08221 3.20016 3.25854 3.27540 3.79900 4.00431 4.24629 4.45053 4.52085 4.64265 4.72236 4.81367 4.91087 5.03038 5.06108 5.15308 5.17683 5.19240 5.21356 5.33805 5.48290 5.51323 5.55360 5.62552 5.66192 5.72776 5.75556 5.81021 5.83988 5.86471 6.01151 6.11810 6.14822 6.15983 6.33745 6.54019 7.03334 7.04448 7.45362 7.45687 7.49275 7.93001 7.96162 8.10902 8.50679 9.08200 9.43935 9.94996 10.66095 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008663 B = 0.003883 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.320775 B = 7210.102137 C = 9625.427631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.092 0.908 5 C 0.124 3.876 6 N -0.701 5.701 7 C 0.597 3.403 8 O -0.531 6.531 9 C -0.078 4.078 10 C 0.054 3.946 11 C -0.069 4.069 12 N -0.495 5.495 13 C 0.201 3.799 14 N -0.431 5.431 15 C 0.067 3.933 16 N -0.659 5.659 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.900 5.900 25 Si 0.927 3.073 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.211 0.789 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.354 0.646 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 1.162 14.533 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.110 0.890 5 C 0.000 4.000 6 N -0.353 5.353 7 C 0.380 3.620 8 O -0.407 6.407 9 C -0.195 4.195 10 C -0.079 4.079 11 C -0.127 4.127 12 N -0.214 5.214 13 C -0.081 4.081 14 N -0.113 5.113 15 C -0.075 4.075 16 N -0.292 5.292 17 C -0.090 4.090 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.541 5.541 25 Si 0.754 3.246 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.227 0.773 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.175 0.825 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.641 2.194 14.815 15.207 hybrid contribution -0.848 -1.383 -1.771 2.401 sum 1.793 0.811 13.044 13.192 Atomic orbital electron populations 1.21752 0.95168 1.01967 1.02126 1.22205 0.96858 0.97821 1.03074 1.21948 0.94033 0.93629 0.94128 0.89007 1.21506 0.93136 0.83223 1.02156 1.45864 1.06891 1.10473 1.72092 1.16895 0.82384 0.85517 0.77225 1.90834 1.57058 1.44990 1.47795 1.20666 1.15911 0.96614 0.86350 1.20792 1.01974 0.89311 0.95865 1.20084 1.02359 1.02455 0.87806 1.69993 1.21538 1.25937 1.03966 1.24974 1.01997 0.86559 0.94609 1.45356 1.46762 1.12653 1.06553 1.22256 1.04492 1.00467 0.80318 1.60233 1.15655 1.53632 0.99715 1.21773 1.00334 0.95967 0.90908 1.19795 0.85626 0.87691 0.84317 1.90530 1.42024 1.27752 1.86306 1.41884 1.45968 1.26734 1.05438 1.19725 1.30072 1.09517 0.83659 0.87908 1.25253 0.96541 0.96572 0.99447 1.69616 1.34380 1.23072 1.27030 0.85835 0.78282 0.79451 0.81008 1.19212 1.20717 1.20718 0.92469 0.92446 0.92461 0.91126 0.91218 0.91204 0.90819 0.74943 0.90909 0.90664 0.91498 0.77275 0.88816 0.88805 0.89512 0.82514 0.89746 0.93476 0.77572 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.56 37.16 0.36 -0.99 16 2 C -0.16 -1.45 5.26 -26.73 -0.14 -1.59 16 3 C 0.07 0.74 2.71 -67.71 -0.18 0.56 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.12 1.38 4.56 -4.04 -0.02 1.37 16 6 N -0.70 -8.73 5.38 -61.59 -0.33 -9.06 16 7 C 0.60 8.76 6.73 -12.81 -0.09 8.68 16 8 O -0.53 -9.35 17.12 5.21 0.09 -9.26 16 9 C -0.08 -1.14 6.66 -82.14 -0.55 -1.68 16 10 C 0.05 0.77 7.15 -82.52 -0.59 0.18 16 11 C -0.07 -0.78 10.24 36.00 0.37 -0.41 16 12 N -0.50 -7.15 11.20 -10.65 -0.12 -7.27 16 13 C 0.20 2.47 12.52 -90.57 -1.13 1.34 16 14 N -0.43 -5.67 3.17 -121.97 -0.39 -6.06 16 15 C 0.07 0.79 11.07 59.85 0.66 1.45 16 16 N -0.66 -8.78 5.43 -107.99 -0.59 -9.36 16 17 C 0.04 0.67 5.38 -4.98 -0.03 0.64 16 18 C 0.44 9.47 7.83 -10.98 -0.09 9.39 16 19 O -0.58 -14.51 15.87 5.55 0.09 -14.43 16 20 N -0.56 -13.29 5.29 -10.96 -0.06 -13.35 16 21 C -0.30 -7.89 9.68 -14.94 -0.14 -8.04 16 22 H 0.10 2.86 7.16 -52.48 -0.38 2.49 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.45 13.05 55.50 0.72 -22.73 16 25 Si 0.93 20.15 29.55 -169.99 -5.02 15.13 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.58 7.06 -51.93 -0.37 0.21 16 32 H 0.07 0.71 6.30 -51.93 -0.33 0.39 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 5.18 8.12 -40.82 -0.33 4.85 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 40 H 0.21 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.12 7.80 -51.93 -0.40 0.72 16 44 H 0.35 4.94 7.17 -39.29 -0.28 4.66 16 45 H 0.08 1.29 6.12 -51.93 -0.32 0.97 16 46 H 0.05 0.68 6.49 -51.93 -0.34 0.35 16 47 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 48 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -32.64 400.49 -8.42 -41.05 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -7.18 Total: 17.91 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -1.67 Total: 11.39 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.76 Total: -67.83 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.18 Total: -23.68 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.64 -8.42 -41.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715066687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.240 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds