Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.08997 * 109.46917 * 54.63176 * 3 2 1 5 5 C 1.53006 * 109.47071 * 174.62728 * 3 2 1 6 6 N 1.46493 * 109.47001 * 175.00350 * 5 3 2 7 7 C 1.34783 * 119.99705 * 180.02562 * 6 5 3 8 8 O 1.21677 * 120.00364 * 355.23639 * 7 6 5 9 9 C 1.46765 * 119.99872 * 175.24060 * 7 6 5 10 10 C 1.36666 * 126.84830 * 99.11585 * 9 7 6 11 11 C 1.50696 * 126.10109 * 0.02562 * 10 9 7 12 12 N 1.33316 * 107.78824 * 179.89508 * 10 9 7 13 13 C 1.30859 * 109.68455 * 0.38212 * 12 10 9 14 14 N 1.34497 * 109.16571 * 359.76691 * 13 12 10 15 15 C 1.46497 * 126.47328 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47121 * 294.62860 * 3 2 1 17 17 C 1.46898 * 111.00069 * 297.07151 * 16 3 2 18 18 C 1.50703 * 109.47117 * 184.36153 * 17 16 3 19 19 O 1.21288 * 120.00144 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99764 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99961 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99614 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00180 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99885 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00080 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47257 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47271 * 119.99687 * 25 23 21 28 28 H 1.48502 * 109.47037 * 239.99451 * 25 23 21 29 29 H 1.08992 * 109.47560 * 185.40900 * 1 2 3 30 30 H 1.08998 * 109.47332 * 305.41236 * 1 2 3 31 31 H 1.09003 * 109.46823 * 65.40737 * 1 2 3 32 32 H 1.09001 * 109.47285 * 240.00091 * 2 1 3 33 33 H 1.09004 * 109.46695 * 119.99896 * 2 1 3 34 34 H 1.09000 * 109.46889 * 54.99720 * 5 3 2 35 35 H 1.09001 * 109.46866 * 295.00411 * 5 3 2 36 36 H 0.96995 * 120.00303 * 359.97438 * 6 5 3 37 37 H 1.09005 * 109.47625 * 89.99780 * 11 10 9 38 38 H 1.09003 * 109.46713 * 209.99658 * 11 10 9 39 39 H 1.09004 * 109.47661 * 329.99406 * 11 10 9 40 40 H 1.07997 * 125.41569 * 179.77675 * 13 12 10 41 41 H 1.08998 * 109.46673 * 274.89094 * 15 14 13 42 42 H 1.09002 * 109.47355 * 34.89304 * 15 14 13 43 43 H 1.08998 * 109.47308 * 154.89312 * 15 14 13 44 44 H 1.00896 * 111.00318 * 61.03233 * 16 3 2 45 45 H 1.08997 * 109.47373 * 304.37074 * 17 16 3 46 46 H 1.09005 * 109.46800 * 64.36378 * 17 16 3 47 47 H 0.96996 * 120.00148 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99709 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9833 0.8380 5 6 3.5641 1.4445 0.1351 6 7 4.0630 2.8167 0.0155 7 6 5.3853 3.0629 0.1029 8 8 6.1563 2.1595 0.3673 9 6 5.8951 4.4209 -0.1206 10 6 6.2318 5.3377 0.8354 11 6 6.1473 5.1373 2.3266 12 7 6.6511 6.4397 0.2132 13 6 6.5875 6.2657 -1.0822 14 7 6.1245 5.0294 -1.3395 15 6 5.9057 4.4393 -2.6624 16 7 1.6591 2.0965 -1.2589 17 6 2.2913 1.4350 -2.4082 18 6 1.9649 2.1955 -3.6676 19 8 1.2740 3.1909 -3.6132 20 7 2.4407 1.7695 -4.8545 21 6 2.1442 2.4616 -6.0002 22 1 1.5290 3.3480 -5.9516 23 6 2.6351 2.0228 -7.2237 24 7 3.3840 0.9445 -7.2826 25 14 2.2306 2.9654 -8.7848 26 1 1.3766 4.1334 -8.4506 27 1 3.4881 3.4365 -9.4186 28 1 1.5049 2.0755 -9.7265 29 1 -0.3634 -1.0230 0.0969 30 1 -0.3634 0.5955 0.8375 31 1 -0.3633 0.4277 -0.9345 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.8296 -0.6526 35 1 3.8431 1.0399 1.1080 36 1 3.4419 3.5479 -0.1274 37 1 7.0894 4.7290 2.6924 38 1 5.9535 6.0943 2.8112 39 1 5.3378 4.4439 2.5548 40 1 6.8632 6.9983 -1.8263 41 1 4.9204 4.7265 -3.0297 42 1 6.6696 4.7991 -3.3517 43 1 5.9641 3.3533 -2.5900 44 1 0.6559 2.1229 -1.3637 45 1 3.3717 1.4138 -2.2661 46 1 1.9158 0.4151 -2.4920 47 1 2.9934 0.9736 -4.8980 48 1 3.7270 0.6384 -8.1367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715066687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -39.435123 kcal Electronic energy + Delta-G solvation = -30147.928880 eV Core-core repulsion = 26044.746384 eV Total energy + Delta-G solvation = -4103.182497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.22172 -40.79141 -40.08878 -38.62129 -35.95821 -35.48627 -35.16708 -33.31548 -32.82030 -32.40684 -30.13039 -29.11932 -28.08563 -27.02456 -26.08055 -24.76940 -23.18902 -21.82519 -21.63233 -21.00499 -20.42439 -19.85561 -18.67253 -18.32219 -17.52027 -17.16498 -16.86712 -16.55351 -16.48138 -16.31368 -15.88623 -15.80262 -15.34665 -15.08240 -15.05270 -14.72413 -14.49526 -14.33141 -14.05913 -13.98282 -13.62489 -13.56237 -13.53323 -13.26377 -13.19850 -13.10717 -12.92598 -12.72362 -12.39257 -12.33610 -12.12622 -11.86394 -11.70232 -11.61773 -11.50211 -10.98277 -10.64787 -10.34535 -10.16262 -10.00400 -9.45747 -9.34547 -8.46203 -5.94459 0.63955 1.12186 1.35838 1.42483 1.55292 1.81856 1.94613 2.05939 2.23275 2.29131 2.93339 3.21335 3.48104 3.55533 3.67921 3.69739 3.77901 3.99655 4.11763 4.15509 4.22619 4.26429 4.27005 4.33460 4.46159 4.50467 4.56144 4.57843 4.71556 4.75877 4.79045 4.84443 4.92198 4.96500 5.11952 5.14694 5.24311 5.31219 5.38054 5.41957 5.54650 5.87305 6.08148 6.08423 6.35671 6.40373 6.60248 6.91267 7.01365 7.13885 7.57233 8.12054 8.71104 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008663 B = 0.003883 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.320775 B = 7210.102137 C = 9625.427631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.084 3.916 4 H 0.112 0.888 5 C 0.122 3.878 6 N -0.690 5.690 7 C 0.600 3.400 8 O -0.566 6.566 9 C -0.105 4.105 10 C 0.045 3.955 11 C -0.068 4.068 12 N -0.521 5.521 13 C 0.208 3.792 14 N -0.436 5.436 15 C 0.071 3.929 16 N -0.666 5.666 17 C 0.062 3.938 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.327 4.327 22 H 0.080 0.920 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.987 3.013 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.415 0.585 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.352 0.648 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 1.203 15.065 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C -0.026 4.026 4 H 0.130 0.870 5 C -0.001 4.001 6 N -0.341 5.341 7 C 0.384 3.616 8 O -0.445 6.445 9 C -0.221 4.221 10 C -0.089 4.089 11 C -0.126 4.126 12 N -0.241 5.241 13 C -0.074 4.074 14 N -0.118 5.118 15 C -0.071 4.071 16 N -0.299 5.299 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.457 4.457 22 H 0.098 0.902 23 C -0.210 4.210 24 N -0.562 5.562 25 Si 0.812 3.188 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.264 0.736 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.173 0.827 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.227 0.773 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.514 2.214 15.365 15.726 hybrid contribution -0.840 -1.362 -1.875 2.465 sum 1.674 0.852 13.490 13.620 Atomic orbital electron populations 1.21740 0.94835 1.02539 1.01732 1.22160 0.97018 0.96739 1.03535 1.21985 0.93224 0.94591 0.92844 0.87038 1.21628 0.93690 0.82299 1.02516 1.45848 1.06231 1.11092 1.70900 1.16942 0.82666 0.85303 0.76682 1.90807 1.57897 1.46016 1.49734 1.20776 1.17357 0.96840 0.87158 1.21273 1.01323 0.89193 0.97068 1.20158 1.02805 1.03273 0.86357 1.70022 1.22702 1.26333 1.05019 1.25777 1.00107 0.86625 0.94887 1.45473 1.46852 1.12981 1.06482 1.22248 1.04833 0.99583 0.80391 1.60204 1.15408 1.54250 1.00046 1.21532 1.00885 0.95778 0.88865 1.20770 0.83784 0.87134 0.85368 1.90503 1.43239 1.29427 1.87083 1.41941 1.46625 1.26875 1.05659 1.19650 1.31009 1.09692 0.85307 0.90224 1.25950 0.96095 0.97264 1.01701 1.69678 1.34737 1.23842 1.27909 0.84946 0.78252 0.78105 0.77537 1.19682 1.19696 1.20030 0.91762 0.91277 0.94109 0.92160 0.89271 0.92327 0.89431 0.74838 0.90607 0.89582 0.90777 0.73619 0.89999 0.86022 0.91019 0.82720 0.89085 0.91812 0.77324 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.56 71.98 0.69 -1.65 16 2 C -0.15 -2.44 5.26 30.59 0.16 -2.28 16 3 C 0.08 1.51 2.71 44.92 0.12 1.63 16 4 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 5 C 0.12 2.55 4.56 86.38 0.39 2.94 16 6 N -0.69 -16.68 5.38 -467.00 -2.51 -19.19 16 7 C 0.60 17.53 6.73 86.47 0.58 18.11 16 8 O -0.57 -19.97 17.12 -4.28 -0.07 -20.05 16 9 C -0.10 -3.01 6.66 40.01 0.27 -2.74 16 10 C 0.04 1.25 7.15 41.96 0.30 1.55 16 11 C -0.07 -1.48 10.24 71.23 0.73 -0.75 16 12 N -0.52 -14.56 11.20 -187.59 -2.10 -16.66 16 13 C 0.21 4.84 12.52 180.33 2.26 7.10 16 14 N -0.44 -11.20 3.17 -539.81 -1.71 -12.91 16 15 C 0.07 1.66 11.07 127.77 1.41 3.07 16 16 N -0.67 -17.00 5.43 -495.58 -2.69 -19.69 16 17 C 0.06 1.89 5.38 85.56 0.46 2.35 16 18 C 0.44 19.21 7.83 87.66 0.69 19.90 16 19 O -0.62 -31.25 15.87 -3.05 -0.05 -31.30 16 20 N -0.57 -27.51 5.29 -306.98 -1.62 -29.14 16 21 C -0.33 -17.52 9.68 84.04 0.81 -16.71 16 22 H 0.08 4.58 7.16 -2.91 -0.02 4.55 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 24 N -0.92 -47.83 13.05 21.66 0.28 -47.55 16 25 Si 0.99 41.16 29.55 68.60 2.03 43.18 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.77 7.06 -2.39 -0.02 0.75 16 32 H 0.06 1.10 6.30 -2.39 -0.02 1.08 16 33 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.06 1.39 6.55 -2.39 -0.02 1.37 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 10.05 8.12 -92.71 -0.75 9.30 16 37 H 0.08 1.58 8.14 -2.38 -0.02 1.57 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.46 7.94 -2.39 -0.02 1.44 16 40 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 1.89 7.80 -2.39 -0.02 1.87 16 44 H 0.35 9.49 7.17 -89.70 -0.64 8.84 16 45 H 0.09 2.72 6.12 -2.39 -0.01 2.71 16 46 H 0.06 1.78 6.49 -2.38 -0.02 1.76 16 47 H 0.39 18.28 7.90 -92.71 -0.73 17.55 16 48 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -71.03 400.49 -0.22 -71.26 By element: Atomic # 1 Polarization: 50.69 SS G_CDS: -1.11 Total: 49.58 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 9.34 Total: 32.47 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -10.36 Total: -145.14 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.12 Total: -51.35 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -71.03 -0.22 -71.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715066687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.821 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds