Wall clock time and date at job start Tue Mar 31 2020 20:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.52994 * 109.47005 * 120.00679 * 2 1 3 5 5 H 1.09000 * 109.47449 * 55.95963 * 4 2 1 6 6 C 1.53006 * 109.47089 * 295.95511 * 4 2 1 7 7 N 1.46497 * 109.46829 * 185.00013 * 6 4 2 8 8 C 1.34781 * 119.99430 * 179.97438 * 7 6 4 9 9 O 1.21681 * 120.00287 * 4.39187 * 8 7 6 10 10 C 1.46768 * 119.99789 * 184.38983 * 8 7 6 11 11 C 1.36657 * 126.84496 * 354.79717 * 10 8 7 12 12 N 1.33324 * 107.78750 * 179.97438 * 11 10 8 13 13 C 1.30860 * 109.68100 * 0.02562 * 12 11 10 14 14 N 1.34496 * 109.16513 * 359.97438 * 13 12 11 15 15 C 1.46497 * 126.47224 * 180.02562 * 14 13 12 16 16 N 1.46903 * 109.46994 * 175.96048 * 4 2 1 17 17 C 1.46898 * 110.99603 * 272.98848 * 16 4 2 18 18 C 1.50705 * 109.46991 * 185.29691 * 17 16 4 19 19 O 1.21297 * 119.99764 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00403 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00531 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99516 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00249 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00050 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99828 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.46980 * 90.00028 * 25 23 21 27 27 H 1.48500 * 109.46598 * 209.99873 * 25 23 21 28 28 H 1.48504 * 109.47090 * 329.99614 * 25 23 21 29 29 H 1.09007 * 109.46978 * 305.61824 * 1 2 3 30 30 H 1.09004 * 109.47411 * 65.61338 * 1 2 3 31 31 H 1.08997 * 109.47537 * 185.61659 * 1 2 3 32 32 H 1.09000 * 109.46648 * 240.00580 * 2 1 3 33 33 H 1.09002 * 109.46955 * 184.15821 * 3 2 1 34 34 H 1.08992 * 109.47742 * 304.15945 * 3 2 1 35 35 H 1.08998 * 109.47049 * 64.16496 * 3 2 1 36 36 H 1.09000 * 109.46536 * 65.00655 * 6 4 2 37 37 H 1.08998 * 109.47117 * 305.00538 * 6 4 2 38 38 H 0.96990 * 120.00692 * 0.02562 * 7 6 4 39 39 H 1.07998 * 126.10928 * 359.73106 * 11 10 8 40 40 H 1.08001 * 125.41119 * 180.02562 * 13 12 11 41 41 H 1.09006 * 109.46846 * 273.52857 * 15 14 13 42 42 H 1.09000 * 109.46918 * 33.51851 * 15 14 13 43 43 H 1.09000 * 109.47376 * 153.52523 * 15 14 13 44 44 H 1.00898 * 111.00346 * 36.94450 * 16 4 2 45 45 H 1.08994 * 109.47854 * 305.29874 * 17 16 4 46 46 H 1.09002 * 109.47263 * 65.30679 * 17 16 4 47 47 H 0.97004 * 119.99583 * 0.02562 * 20 18 17 48 48 H 0.96995 * 120.00107 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6187 -1.7260 1.2860 6 6 1.6147 0.0561 2.4964 7 7 2.2027 -0.5674 3.6845 8 6 1.9638 -0.0491 4.9055 9 8 1.1966 0.8871 5.0297 10 6 2.6291 -0.6141 6.0855 11 6 3.4331 -1.7185 6.1226 12 7 3.8326 -1.8893 7.3831 13 6 3.3214 -0.9509 8.1384 14 7 2.5675 -0.1353 7.3798 15 6 1.8221 1.0392 7.8394 16 7 3.5057 -0.8064 1.2013 17 6 3.9399 -2.0018 0.4661 18 6 5.4396 -2.1252 0.5488 19 8 6.0833 -1.2990 1.1605 20 7 6.0655 -3.1543 -0.0561 21 6 7.4297 -3.2669 0.0196 22 1 8.0028 -2.5312 0.5643 23 6 8.0750 -4.3275 -0.6044 24 7 9.3826 -4.4357 -0.5314 25 14 7.0837 -5.5996 -1.5471 26 1 6.9493 -5.1725 -2.9629 27 1 7.7786 -6.9107 -1.4893 28 1 5.7352 -5.7268 -0.9382 29 1 -0.3633 0.5985 0.8355 30 1 -0.3634 0.4243 -0.9360 31 1 -0.3634 -1.0227 0.1006 32 1 1.8933 -0.5138 -0.8901 33 1 3.1275 1.4433 -0.0745 34 1 1.6172 1.9774 -0.8503 35 1 1.7389 1.9343 0.9249 36 1 0.5279 0.0432 2.5795 37 1 1.9609 1.0867 2.4178 38 1 2.7645 -1.3527 3.5924 39 1 3.6947 -2.3439 5.2819 40 1 3.4803 -0.8473 9.2016 41 1 0.8381 0.7298 8.1919 42 1 2.3654 1.5187 8.6535 43 1 1.7079 1.7427 7.0146 44 1 3.9036 0.0294 0.7999 45 1 3.4778 -2.8861 0.9048 46 1 3.6397 -1.9150 -0.5782 47 1 5.5506 -3.8152 -0.5449 48 1 9.8330 -5.1763 -0.9667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715594346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:39 Heat of formation + Delta-G solvation = -6.570971 kcal Electronic energy + Delta-G solvation = -29453.212702 eV Core-core repulsion = 25351.455302 eV Total energy + Delta-G solvation = -4101.757400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.29317 -39.70329 -38.68570 -37.78282 -34.67914 -34.10765 -33.84722 -33.21307 -31.65302 -30.54510 -28.41900 -27.53767 -27.26391 -26.26533 -24.21831 -23.27553 -22.66021 -21.45605 -20.29179 -19.53017 -19.38367 -18.42523 -17.90898 -16.73813 -16.27778 -16.19570 -15.85515 -15.45815 -15.29852 -14.89043 -14.80723 -14.44970 -14.14635 -14.04601 -13.84364 -13.77027 -13.36707 -13.30355 -13.08895 -13.02579 -12.91714 -12.55222 -12.48098 -12.31751 -12.03176 -11.86372 -11.70414 -11.31928 -11.13778 -11.00845 -10.69917 -10.60393 -10.49298 -9.97903 -9.92661 -9.85543 -9.57562 -9.13170 -8.67748 -8.64895 -8.21451 -8.16600 -6.31204 -3.82742 1.21753 2.33785 2.75518 3.01592 3.05629 3.14660 3.23308 3.33634 3.72767 3.96933 4.09846 4.41812 4.50292 4.52423 4.57204 4.71599 4.78646 4.86154 4.92973 4.99437 5.04567 5.13178 5.21008 5.25759 5.33626 5.36419 5.43938 5.53045 5.61519 5.63645 5.67395 5.74937 5.77966 5.86341 5.90475 5.96450 6.06017 6.11764 6.35079 6.42304 6.88125 6.97702 7.45611 7.47757 7.57560 7.78828 8.12954 8.14335 8.59238 8.95080 9.42091 9.82211 10.81962 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.003155 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.434975 B = 8873.607226 C =11223.423695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.157 4.157 4 C 0.076 3.924 5 H 0.086 0.914 6 C 0.134 3.866 7 N -0.697 5.697 8 C 0.595 3.405 9 O -0.559 6.559 10 C -0.088 4.088 11 C 0.046 3.954 12 N -0.495 5.495 13 C 0.202 3.798 14 N -0.430 5.430 15 C 0.068 3.932 16 N -0.662 5.662 17 C 0.046 3.954 18 C 0.449 3.551 19 O -0.562 6.562 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.181 0.819 40 H 0.211 0.789 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.355 0.645 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.315 7.921 8.208 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.214 4.214 4 C -0.035 4.035 5 H 0.104 0.896 6 C 0.010 3.990 7 N -0.347 5.347 8 C 0.381 3.619 9 O -0.440 6.440 10 C -0.204 4.204 11 C -0.109 4.109 12 N -0.213 5.213 13 C -0.080 4.080 14 N -0.111 5.111 15 C -0.074 4.074 16 N -0.296 5.296 17 C -0.087 4.087 18 C 0.234 3.766 19 O -0.443 6.443 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.198 0.802 40 H 0.228 0.772 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.177 0.823 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.712 8.279 9.588 24.279 hybrid contribution -0.968 -0.653 -2.030 2.342 sum -21.680 7.626 7.558 24.193 Atomic orbital electron populations 1.21860 0.94674 1.01930 1.02038 1.21751 0.96663 0.97275 0.98659 1.21977 1.01490 0.95586 1.02336 1.21948 0.89069 0.99452 0.93081 0.89613 1.21502 0.97426 0.97380 0.82735 1.45437 1.51772 1.32841 1.04665 1.16730 0.80661 0.82328 0.82150 1.90751 1.37405 1.29524 1.86326 1.20771 1.10907 1.02365 0.86368 1.22755 0.96461 0.96005 0.95637 1.70186 1.24361 1.23920 1.02824 1.25156 0.94667 0.89118 0.99084 1.45236 1.36253 1.22872 1.06754 1.22254 0.96242 0.86412 1.02468 1.60157 1.05458 1.05941 1.57996 1.21775 0.95706 0.94419 0.96780 1.19691 0.88309 0.84196 0.84373 1.90586 1.66803 1.42339 1.44574 1.42208 1.08098 1.24105 1.48594 1.19424 0.80043 1.11428 1.32432 0.86286 1.25040 0.95596 0.97660 0.97854 1.69619 1.07276 1.31714 1.43488 0.86675 0.79983 0.82048 0.80678 1.19740 1.20189 1.19474 0.92221 0.92633 0.92541 0.90603 0.92133 0.92392 0.91786 0.90997 0.90823 0.75121 0.80227 0.77215 0.90299 0.89596 0.87774 0.82347 0.89444 0.93606 0.79766 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.78 37.16 0.33 -0.74 16 2 C -0.12 -1.05 2.80 -90.62 -0.25 -1.30 16 3 C -0.16 -1.38 8.58 37.16 0.32 -1.06 16 4 C 0.08 0.74 1.98 -67.71 -0.13 0.60 16 5 H 0.09 0.77 7.68 -51.93 -0.40 0.37 16 6 C 0.13 1.40 4.68 -4.04 -0.02 1.38 16 7 N -0.70 -8.23 5.38 -61.59 -0.33 -8.56 16 8 C 0.59 7.99 7.78 -12.81 -0.10 7.89 16 9 O -0.56 -8.47 14.87 5.21 0.08 -8.39 16 10 C -0.09 -1.14 6.91 -82.14 -0.57 -1.71 16 11 C 0.05 0.62 11.37 -17.48 -0.20 0.42 16 12 N -0.50 -6.85 11.20 -14.43 -0.16 -7.01 16 13 C 0.20 2.13 12.52 -90.57 -1.13 0.99 16 14 N -0.43 -4.72 3.17 -121.97 -0.39 -5.11 16 15 C 0.07 0.53 10.73 59.85 0.64 1.17 16 16 N -0.66 -8.70 5.23 -107.99 -0.56 -9.27 16 17 C 0.05 0.67 6.00 -4.97 -0.03 0.64 16 18 C 0.45 9.58 7.83 -10.98 -0.09 9.50 16 19 O -0.56 -14.44 15.89 5.54 0.09 -14.36 16 20 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 21 C -0.30 -8.46 10.16 -14.93 -0.15 -8.62 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.06 27.74 -169.99 -4.71 14.34 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 29 H 0.06 0.43 6.94 -51.93 -0.36 0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.68 7.61 -51.93 -0.39 0.29 16 33 H 0.06 0.60 6.55 -51.93 -0.34 0.26 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 6.02 -51.93 -0.31 0.25 16 36 H 0.07 0.71 6.92 -51.93 -0.36 0.35 16 37 H 0.07 0.84 5.99 -51.93 -0.31 0.53 16 38 H 0.41 4.79 7.08 -40.82 -0.29 4.50 16 39 H 0.18 2.16 7.47 -52.49 -0.39 1.77 16 40 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 1.00 6.41 -51.93 -0.33 0.67 16 44 H 0.35 5.04 6.44 -39.29 -0.25 4.78 16 45 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 46 H 0.05 0.58 7.63 -51.93 -0.40 0.19 16 47 H 0.37 7.41 5.76 -40.82 -0.24 7.17 16 48 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -35.67 389.78 -7.76 -43.44 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -6.88 Total: 17.26 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -1.48 Total: 10.18 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -0.73 Total: -68.35 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.67 -7.76 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715594346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.864 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds