Wall clock time and date at job start Tue Mar 31 2020 19:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 C 1.50702 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.35371 * 126.38375 * 85.00002 * 4 3 2 6 6 C 1.41496 * 105.50187 * 180.02562 * 5 4 3 7 7 C 1.47706 * 126.51838 * 180.02562 * 6 5 4 8 8 O 1.21575 * 120.00205 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00340 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46801 * 325.00230 * 10 9 7 12 12 C 1.52995 * 109.47131 * 84.99614 * 10 9 7 13 13 C 1.53002 * 109.47177 * 205.00092 * 10 9 7 14 14 N 1.46901 * 109.47101 * 54.99670 * 13 10 9 15 15 C 1.46905 * 110.99781 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47041 * 180.02562 * 15 14 13 17 17 O 1.21301 * 120.00173 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00324 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00299 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00114 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99856 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99749 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00179 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47166 * 90.00038 * 23 21 19 25 25 H 1.48497 * 109.47218 * 210.00409 * 23 21 19 26 26 H 1.48502 * 109.47075 * 329.99918 * 23 21 19 27 27 N 1.31814 * 106.96607 * 359.97438 * 6 5 4 28 28 N 1.28468 * 110.07177 * 0.02562 * 27 6 5 29 29 H 0.96995 * 124.88389 * 179.97438 * 28 27 6 30 30 H 1.08998 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47409 * 300.00291 * 1 2 3 32 32 H 1.09003 * 109.46595 * 59.99939 * 1 2 3 33 33 H 1.08994 * 109.47409 * 239.99709 * 2 1 3 34 34 H 1.08998 * 109.46699 * 119.99602 * 2 1 3 35 35 H 1.09003 * 109.47116 * 59.99839 * 3 2 1 36 36 H 1.08996 * 109.47636 * 299.99852 * 3 2 1 37 37 H 1.08002 * 127.24364 * 0.02562 * 5 4 3 38 38 H 0.96998 * 119.99970 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.47292 * 300.00174 * 12 10 9 40 40 H 1.09005 * 109.46775 * 60.00600 * 12 10 9 41 41 H 1.09002 * 109.47351 * 180.02562 * 12 10 9 42 42 H 1.08997 * 109.47032 * 175.00156 * 13 10 9 43 43 H 1.09000 * 109.46873 * 295.00102 * 13 10 9 44 44 H 1.00893 * 111.00112 * 303.95333 * 14 13 10 45 45 H 1.09001 * 109.47200 * 300.00157 * 15 14 13 46 46 H 1.09000 * 109.46838 * 60.00200 * 15 14 13 47 47 H 0.97007 * 119.99448 * 359.97438 * 18 16 15 48 48 H 0.97007 * 119.99686 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3505 1.3474 -1.0847 6 6 5.6723 1.3908 -0.5816 7 6 6.9170 1.3216 -1.3739 8 8 6.8624 1.2160 -2.5838 9 7 8.1133 1.3746 -0.7555 10 6 9.3478 1.3054 -1.5412 11 1 9.2003 0.6399 -2.3918 12 6 9.7108 2.7038 -2.0449 13 6 10.4811 0.7690 -0.6644 14 7 10.0829 -0.5206 -0.0843 15 6 11.1494 -1.0673 0.7653 16 6 10.7059 -2.3875 1.3409 17 8 9.6091 -2.8293 1.0704 18 7 11.5275 -3.0770 2.1571 19 6 11.1238 -4.2778 2.6811 20 1 10.1476 -4.6715 2.4397 21 6 11.9707 -4.9883 3.5230 22 7 11.5835 -6.1390 4.0257 23 14 13.6596 -4.3076 3.9401 24 1 13.5656 -3.4618 5.1570 25 1 14.5983 -5.4309 4.1893 26 1 14.1574 -3.4890 2.8055 27 7 5.5817 1.5059 0.7283 28 7 4.3476 1.5372 1.0839 29 1 4.0358 1.6172 1.9989 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 4.0465 1.2573 -2.1171 38 1 8.1570 1.4585 0.2099 39 1 8.9035 3.0859 -2.6695 40 1 9.8584 3.3693 -1.1943 41 1 10.6291 2.6523 -2.6299 42 1 11.3767 0.6336 -1.2707 43 1 10.6883 1.4790 0.1362 44 1 9.2190 -0.4345 0.4298 45 1 12.0494 -1.2155 0.1685 46 1 11.3616 -0.3701 1.5758 47 1 12.4045 -2.7235 2.3737 48 1 12.1749 -6.6352 4.6131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715984294.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:10 Heat of formation + Delta-G solvation = -39.483247 kcal Electronic energy + Delta-G solvation = -28320.619398 eV Core-core repulsion = 24217.434814 eV Total energy + Delta-G solvation = -4103.184584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.72556 -40.74820 -40.24335 -37.86951 -36.26130 -36.07901 -35.12676 -33.75438 -33.22158 -32.11713 -31.50160 -29.11248 -27.41034 -26.66797 -25.54076 -24.43231 -22.90988 -21.97566 -21.94292 -21.31758 -21.20529 -20.26899 -18.72682 -18.29907 -17.68404 -17.21379 -17.00788 -16.82489 -16.52987 -15.95156 -15.94339 -15.60200 -15.43752 -15.19539 -14.95376 -14.79769 -14.60248 -14.46539 -14.19299 -14.08310 -13.95748 -13.36649 -13.13986 -13.06660 -13.04727 -12.81118 -12.68506 -12.47434 -12.42060 -12.14580 -12.01069 -11.96456 -11.89456 -11.56116 -11.52144 -11.25675 -10.52707 -10.45759 -10.26079 -10.09122 -9.97175 -9.33309 -8.42126 -6.03387 0.48569 1.07652 1.30241 1.35512 1.44944 1.84252 1.94965 2.20366 2.22882 2.35612 2.70348 3.14305 3.31799 3.40966 3.63594 3.84047 3.96214 4.12931 4.15274 4.22012 4.22770 4.35412 4.44093 4.44647 4.53931 4.56579 4.67311 4.69524 4.75176 4.80002 4.82686 4.93195 4.96521 5.07783 5.22508 5.28885 5.29891 5.33583 5.45672 5.48612 5.51852 5.88456 6.02479 6.06364 6.31201 6.40710 6.58974 6.83200 6.87220 7.13871 7.38692 7.96180 8.75706 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.002380 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.848901 B =11759.585590 C =13991.565569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.044 4.044 4 C 0.036 3.964 5 C -0.200 4.200 6 C -0.038 4.038 7 C 0.603 3.397 8 O -0.569 6.569 9 N -0.702 5.702 10 C 0.142 3.858 11 H 0.071 0.929 12 C -0.151 4.151 13 C 0.057 3.943 14 N -0.693 5.693 15 C 0.062 3.938 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.589 5.589 19 C -0.330 4.330 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.230 1.230 27 N -0.268 5.268 28 N -0.364 5.364 29 H 0.460 0.540 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.161 0.839 38 H 0.409 0.591 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.062 0.938 44 H 0.341 0.659 45 H 0.119 0.881 46 H 0.084 0.916 47 H 0.391 0.609 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 25.120 -5.630 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.083 4.083 4 C -0.091 4.091 5 C -0.228 4.228 6 C -0.198 4.198 7 C 0.388 3.612 8 O -0.447 6.447 9 N -0.353 5.353 10 C 0.038 3.962 11 H 0.089 0.911 12 C -0.210 4.210 13 C -0.071 4.071 14 N -0.326 5.326 15 C -0.070 4.070 16 C 0.233 3.767 17 O -0.502 6.502 18 N -0.231 5.231 19 C -0.459 4.459 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.153 1.153 27 N -0.106 5.106 28 N -0.081 5.081 29 H 0.308 0.692 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.179 0.821 38 H 0.244 0.756 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.159 0.841 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.227 0.773 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.491 24.292 -6.185 27.576 hybrid contribution 0.025 -0.169 1.338 1.349 sum -11.467 24.123 -4.847 27.146 Atomic orbital electron populations 1.21752 0.93986 1.02159 1.02814 1.21536 0.97040 0.95502 1.02067 1.20363 0.83537 0.98397 1.06004 1.21834 0.96419 1.04644 0.86201 1.21683 0.90306 1.10020 1.00823 1.21908 0.95437 1.11841 0.90567 1.17102 0.82593 0.75422 0.86079 1.90747 1.87392 1.51880 1.14663 1.45851 1.05071 1.73040 1.11347 1.21146 0.82518 0.98136 0.94427 0.91113 1.22066 1.02399 0.94583 1.01936 1.22388 0.97861 0.88522 0.98370 1.59988 1.05464 1.27584 1.39593 1.21663 0.96236 0.91883 0.97179 1.21090 0.85493 0.88600 0.81492 1.90561 1.24318 1.72103 1.63228 1.42012 1.17154 1.19578 1.44375 1.18991 1.02729 0.97200 1.26966 0.93014 1.26171 1.03979 0.95651 0.95759 1.69815 1.39557 1.15277 1.32937 0.85328 0.76354 0.79145 0.80448 1.17966 1.20076 1.15285 1.73470 1.03149 1.19549 1.14384 1.43405 1.02178 1.51629 1.10915 0.69235 0.92852 0.91529 0.91733 0.92614 0.92563 0.87909 0.87659 0.82107 0.75551 0.93545 0.90878 0.89258 0.87364 0.92040 0.84057 0.86347 0.89871 0.77344 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 3 C -0.04 -0.39 5.77 29.85 0.17 -0.22 16 4 C 0.04 0.59 6.48 41.40 0.27 0.86 16 5 C -0.20 -4.69 10.73 22.41 0.24 -4.45 16 6 C -0.04 -1.04 7.13 42.45 0.30 -0.74 16 7 C 0.60 18.46 7.79 86.75 0.68 19.13 16 8 O -0.57 -20.75 16.59 -3.95 -0.07 -20.82 16 9 N -0.70 -17.72 4.35 -445.53 -1.94 -19.66 16 10 C 0.14 3.22 2.88 44.99 0.13 3.35 16 11 H 0.07 2.04 7.58 -2.38 -0.02 2.02 16 12 C -0.15 -2.59 9.48 71.98 0.68 -1.91 16 13 C 0.06 1.14 5.30 86.30 0.46 1.60 16 14 N -0.69 -20.89 6.12 -517.92 -3.17 -24.06 16 15 C 0.06 1.88 6.17 85.55 0.53 2.41 16 16 C 0.45 20.48 7.82 87.66 0.69 21.17 16 17 O -0.62 -35.55 15.78 -3.09 -0.05 -35.60 16 18 N -0.59 -28.03 5.09 -306.99 -1.56 -29.59 16 19 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 20 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 21 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 22 N -0.94 -56.96 13.96 21.66 0.30 -56.66 16 23 Si 0.97 38.74 27.74 68.60 1.90 40.65 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 27 N -0.27 -6.43 11.92 -48.18 -0.57 -7.01 16 28 N -0.36 -6.12 6.83 -47.92 -0.33 -6.45 16 29 H 0.46 4.23 8.96 -220.00 -1.97 2.26 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.41 9.30 7.88 -92.71 -0.73 8.57 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.34 11.37 7.28 -89.70 -0.65 10.72 16 45 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.39 15.16 5.76 -92.70 -0.53 14.62 16 48 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -88.43 405.35 -2.06 -90.49 By element: Atomic # 1 Polarization: 51.40 SS G_CDS: -2.93 Total: 48.47 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.36 Total: 20.23 kcal Atomic # 7 Polarization: -136.15 SS G_CDS: -7.27 Total: -143.42 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.11 Total: -56.41 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.65 kcal Total: -88.43 -2.06 -90.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715984294.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.004 kcal (2) G-P(sol) polarization free energy of solvation -88.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds