Wall clock time and date at job start Tue Mar 31 2020 20:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 C 1.52998 * 109.47480 * 120.00521 * 2 1 3 5 5 C 1.53000 * 109.47254 * 174.99882 * 4 2 1 6 6 N 1.46499 * 109.47174 * 179.97438 * 5 4 2 7 7 C 1.34817 * 126.59026 * 125.24399 * 6 5 4 8 8 C 1.36601 * 106.83600 * 180.13331 * 7 6 5 9 9 C 1.47525 * 125.77110 * 179.89871 * 8 7 6 10 10 O 1.21594 * 119.99553 * 359.71714 * 9 8 7 11 11 N 1.34769 * 120.00074 * 179.71156 * 9 8 7 12 12 C 1.46505 * 120.00035 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46949 * 180.02562 * 12 11 9 14 14 O 1.42905 * 113.28058 * 313.06350 * 13 12 11 15 15 C 1.53498 * 114.20416 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98306 * 220.34331 * 15 13 12 17 17 C 1.36940 * 136.05731 * 207.08256 * 16 15 13 18 18 H 1.08000 * 119.99932 * 349.94863 * 17 16 15 19 19 C 1.38813 * 119.99930 * 169.94032 * 17 16 15 20 20 N 1.31625 * 119.99407 * 158.01201 * 19 17 16 21 21 Si 1.86800 * 120.00412 * 337.74180 * 19 17 16 22 22 H 1.48501 * 109.47112 * 89.99637 * 21 19 17 23 23 H 1.48503 * 109.46967 * 209.99680 * 21 19 17 24 24 H 1.48500 * 109.46671 * 329.99569 * 21 19 17 25 25 C 1.47060 * 87.88814 * 27.33887 * 16 15 13 26 26 N 1.34397 * 108.45969 * 359.63361 * 8 7 6 27 27 N 1.28764 * 109.52623 * 0.22886 * 26 8 7 28 28 H 1.09004 * 109.46837 * 299.99267 * 1 2 3 29 29 H 1.08992 * 109.47516 * 59.99700 * 1 2 3 30 30 H 1.09003 * 109.46667 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46688 * 239.99962 * 2 1 3 32 32 H 1.08998 * 109.46959 * 60.00330 * 3 2 1 33 33 H 1.08999 * 109.46793 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47183 * 300.00295 * 3 2 1 35 35 H 1.09002 * 109.47264 * 54.99754 * 4 2 1 36 36 H 1.08999 * 109.46747 * 294.99889 * 4 2 1 37 37 H 1.09002 * 109.47089 * 59.99765 * 5 4 2 38 38 H 1.08999 * 109.47250 * 299.99699 * 5 4 2 39 39 H 1.07994 * 126.58505 * 359.97438 * 7 6 5 40 40 H 0.97007 * 120.00097 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.46555 * 60.00643 * 12 11 9 42 42 H 1.08999 * 109.46980 * 300.00730 * 12 11 9 43 43 H 0.96692 * 113.99888 * 46.94185 * 14 13 12 44 44 H 1.08997 * 113.47439 * 105.56066 * 15 13 12 45 45 H 1.09000 * 113.46718 * 335.11626 * 15 13 12 46 46 H 0.96998 * 120.00190 * 3.52635 * 20 19 17 47 47 H 1.08998 * 113.46800 * 87.43838 * 25 16 15 48 48 H 1.09001 * 113.47448 * 217.88196 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1878 6 7 4.0534 -1.5213 2.3841 7 6 4.8353 -2.6191 2.4157 8 6 5.0422 -2.9197 3.7320 9 6 5.8416 -4.0493 4.2432 10 8 6.3813 -4.8131 3.4660 11 7 5.9738 -4.2347 5.5716 12 6 6.7672 -5.3568 6.0792 13 6 6.7552 -5.3390 7.6091 14 8 7.0167 -4.0470 8.1609 15 6 7.5589 -6.4744 8.2580 16 7 6.4818 -6.5989 9.2516 17 6 6.3820 -7.0239 10.5496 18 1 7.2144 -7.5275 11.0184 19 6 5.2109 -6.8073 11.2627 20 7 4.9302 -7.5543 12.3094 21 14 4.0371 -5.4509 10.7414 22 1 3.0526 -5.9939 9.7713 23 1 3.3215 -4.9302 11.9339 24 1 4.8042 -4.3502 10.1047 25 6 5.5579 -6.0721 8.2359 26 7 4.3993 -2.0091 4.4827 27 7 3.8018 -1.1641 3.7165 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6055 -1.7199 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1675 1.1419 38 1 3.8533 -1.3940 0.3000 39 1 5.2216 -3.1588 1.5638 40 1 5.5431 -3.6255 6.1916 41 1 7.7933 -5.2670 5.7225 42 1 6.3397 -6.2943 5.7237 43 1 6.5092 -3.3338 7.7500 44 1 8.5070 -6.1467 8.6843 45 1 7.6639 -7.3517 7.6197 46 1 5.5650 -8.2218 12.6132 47 1 5.1355 -6.8432 7.5917 48 1 4.8013 -5.4015 8.6433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724477094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:47 Heat of formation + Delta-G solvation = 39.603821 kcal Electronic energy + Delta-G solvation = -28658.525728 eV Core-core repulsion = 24558.770617 eV Total energy + Delta-G solvation = -4099.755111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.23747 -41.26563 -40.06070 -38.13127 -36.75012 -35.46245 -35.05712 -34.42685 -32.18489 -30.86407 -30.12079 -28.02830 -27.70758 -27.05069 -25.58118 -24.61399 -23.11259 -22.81771 -21.60055 -21.13809 -20.82660 -19.82293 -19.35779 -17.98079 -17.39438 -17.30375 -17.20576 -16.51964 -16.40166 -16.04331 -15.95831 -15.70183 -15.69017 -15.18378 -14.98038 -14.80454 -14.69822 -14.53581 -14.05042 -13.97184 -13.53542 -13.38683 -13.20596 -13.13838 -12.81582 -12.79932 -12.71970 -12.63962 -12.15741 -12.04228 -11.88631 -11.69870 -11.69077 -11.53402 -11.39500 -11.22330 -11.15298 -10.79096 -10.67212 -10.42185 -10.09852 -9.23303 -8.67851 -5.44556 0.16554 0.60458 1.10207 1.36491 1.51731 1.69820 1.99179 2.21487 2.51446 2.86678 2.95355 3.14533 3.21768 3.29660 3.39189 3.75280 3.77263 3.79421 3.93152 3.99471 4.02504 4.27603 4.29242 4.35793 4.45495 4.52385 4.60248 4.60776 4.67917 4.74256 4.75935 4.81498 4.82515 4.91221 4.98672 5.01744 5.05131 5.08277 5.18952 5.28034 5.30596 5.41161 5.46985 5.51800 5.95453 6.27834 6.67754 6.70116 6.88256 7.06866 7.32844 8.28058 8.85517 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.002148 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.620468 B =13032.296982 C =14058.521996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.155 4.155 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.347 5.347 7 C 0.113 3.887 8 C -0.127 4.127 9 C 0.611 3.389 10 O -0.561 6.561 11 N -0.711 5.711 12 C 0.121 3.879 13 C 0.100 3.900 14 O -0.537 6.537 15 C 0.131 3.869 16 N -0.649 5.649 17 C -0.296 4.296 18 H 0.047 0.953 19 C -0.080 4.080 20 N -0.959 5.959 21 Si 1.104 2.896 22 H -0.277 1.277 23 H -0.304 1.304 24 H -0.258 1.258 25 C 0.070 3.930 26 N -0.227 5.227 27 N -0.087 5.087 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.240 0.760 40 H 0.409 0.591 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.383 0.617 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.248 0.752 47 H 0.069 0.931 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 18.749 -35.113 40.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.164 4.164 5 C -0.008 4.008 6 N -0.132 5.132 7 C -0.045 4.045 8 C -0.267 4.267 9 C 0.397 3.603 10 O -0.439 6.439 11 N -0.363 5.363 12 C -0.004 4.004 13 C 0.057 3.943 14 O -0.344 6.344 15 C 0.005 3.995 16 N -0.377 5.377 17 C -0.424 4.424 18 H 0.064 0.936 19 C -0.273 4.273 20 N -0.603 5.603 21 Si 0.931 3.069 22 H -0.203 1.203 23 H -0.232 1.232 24 H -0.184 1.184 25 C -0.055 4.055 26 N -0.101 5.101 27 N -0.067 5.067 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.256 0.744 40 H 0.246 0.754 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.233 0.767 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.189 19.509 -33.782 39.499 hybrid contribution 1.367 -1.243 -0.064 1.849 sum -4.822 18.266 -33.846 38.762 Atomic orbital electron populations 1.21856 0.95121 1.01877 1.02023 1.21027 0.95918 0.96465 0.97080 1.21968 1.01637 0.95550 1.02075 1.21915 0.92750 1.01799 0.99894 1.22668 0.96158 0.99758 0.82262 1.50847 1.33485 1.19907 1.08924 1.23894 0.92096 0.88672 0.99852 1.21418 1.11093 1.02282 0.91935 1.16830 0.78954 0.82490 0.82041 1.90798 1.49518 1.46704 1.56878 1.45683 1.52652 1.31062 1.06924 1.21795 0.97394 0.90456 0.90732 1.22812 0.96693 0.84757 0.90043 1.86622 1.68100 1.15737 1.63930 1.22671 0.93058 0.94075 0.89703 1.45664 1.06945 1.78026 1.07085 1.19826 1.02191 1.32916 0.87434 0.93553 1.27006 1.00384 1.03397 0.96542 1.71043 1.35337 1.23063 1.30874 0.83276 0.73955 0.75146 0.74565 1.20327 1.23171 1.18365 1.23720 0.94938 0.96258 0.90586 1.74636 1.06073 1.01553 1.27797 1.81936 1.21284 1.19244 0.84234 0.93363 0.91737 0.92739 0.89023 0.93341 0.91482 0.91941 0.91577 0.91874 0.86838 0.83973 0.74413 0.75394 0.88921 0.88954 0.76698 0.93103 0.89573 0.94303 0.91314 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 71.98 0.66 -0.21 16 2 C -0.09 -0.30 2.92 -10.79 -0.03 -0.33 16 3 C -0.16 -0.55 8.95 71.98 0.64 0.10 16 4 C -0.13 -0.78 4.89 30.59 0.15 -0.63 16 5 C 0.11 0.45 6.29 86.38 0.54 0.99 16 6 N -0.35 -4.41 3.69 -347.10 -1.28 -5.69 16 7 C 0.11 1.50 11.27 83.85 0.95 2.45 16 8 C -0.13 -2.66 6.99 40.82 0.29 -2.37 16 9 C 0.61 14.74 7.82 86.69 0.68 15.42 16 10 O -0.56 -15.61 16.86 -4.01 -0.07 -15.67 16 11 N -0.71 -16.76 5.34 -466.28 -2.49 -19.25 16 12 C 0.12 3.05 5.42 86.38 0.47 3.52 16 13 C 0.10 3.29 1.74 -10.37 -0.02 3.27 16 14 O -0.54 -18.36 13.57 -148.98 -2.02 -20.38 16 15 C 0.13 5.04 8.10 83.18 0.67 5.71 16 16 N -0.65 -32.53 3.56 -738.41 -2.63 -35.16 16 17 C -0.30 -18.00 10.96 84.03 0.92 -17.08 16 18 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 19 C -0.08 -4.98 5.50 84.86 0.47 -4.52 16 20 N -0.96 -63.70 13.71 21.65 0.30 -63.40 16 21 Si 1.10 56.04 25.32 68.60 1.74 57.77 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.30 -15.60 7.11 99.48 0.71 -14.90 16 24 H -0.26 -12.08 6.55 99.48 0.65 -11.43 16 25 C 0.07 2.85 6.63 83.27 0.55 3.40 16 26 N -0.23 -5.37 12.04 -49.99 -0.60 -5.97 16 27 N -0.09 -1.82 13.65 37.02 0.51 -1.31 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 0.10 6.57 -2.39 -0.02 0.08 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 0.25 6.57 -2.39 -0.02 0.24 16 38 H 0.14 -0.41 8.08 -2.39 -0.02 -0.43 16 39 H 0.24 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.41 9.11 6.64 -92.70 -0.62 8.50 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.09 2.27 7.89 -2.39 -0.02 2.25 16 43 H 0.38 9.78 7.21 -74.06 -0.53 9.25 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 2.85 8.10 -2.39 -0.02 2.83 16 46 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 47 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 48 H 0.04 1.88 3.70 -2.39 -0.01 1.87 16 Total: -1.00 -84.32 394.11 0.14 -84.17 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -0.25 Total: 15.18 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 6.94 Total: 9.71 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -6.20 Total: -130.78 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -2.09 Total: -36.06 kcal Atomic # 14 Polarization: 56.04 SS G_CDS: 1.74 Total: 57.77 kcal Total: -84.32 0.14 -84.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724477094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.778 kcal (2) G-P(sol) polarization free energy of solvation -84.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds