Wall clock time and date at job start Tue Mar 31 2020 20:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47213 * 2 1 4 4 C 1.52997 * 109.46952 * 240.00084 * 2 1 3 5 5 N 1.46500 * 109.47043 * 119.99842 * 2 1 3 6 6 C 1.34586 * 125.74436 * 74.98477 * 5 2 1 7 7 N 1.30872 * 107.62142 * 179.80123 * 6 5 2 8 8 C 1.34551 * 107.26778 * 0.36201 * 7 6 5 9 9 C 1.47871 * 126.04361 * 179.89135 * 8 7 6 10 10 O 1.21560 * 119.99693 * 172.07805 * 9 8 7 11 11 N 1.34771 * 120.00565 * 352.08124 * 9 8 7 12 12 C 1.47155 * 120.98009 * 353.22257 * 11 9 8 13 13 C 1.53297 * 108.38545 * 230.55826 * 12 11 9 14 14 O 1.42962 * 109.21967 * 307.69522 * 13 12 11 15 15 C 1.42962 * 114.16576 * 62.58174 * 14 13 12 16 16 H 1.08997 * 109.55649 * 57.36725 * 15 14 13 17 17 C 1.53001 * 109.51124 * 177.49395 * 15 14 13 18 18 N 1.46502 * 109.47184 * 299.74269 * 17 15 14 19 19 C 1.36937 * 120.00247 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99616 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00144 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47348 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46876 * 119.99885 * 23 21 19 26 26 H 1.48496 * 109.47207 * 239.99823 * 23 21 19 27 27 C 1.47153 * 120.98625 * 173.24538 * 11 9 8 28 28 N 1.28849 * 125.74751 * 255.01920 * 5 2 1 29 29 H 1.09004 * 109.46705 * 300.00138 * 1 2 3 30 30 H 1.08998 * 109.46912 * 59.99770 * 1 2 3 31 31 H 1.08993 * 109.47165 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46803 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46992 * 300.00072 * 3 2 1 34 34 H 1.08992 * 109.47024 * 60.00086 * 3 2 1 35 35 H 1.09000 * 109.46963 * 300.00014 * 4 2 1 36 36 H 1.09005 * 109.47282 * 59.99911 * 4 2 1 37 37 H 1.09000 * 109.47248 * 180.02562 * 4 2 1 38 38 H 1.07999 * 126.18927 * 0.03155 * 6 5 2 39 39 H 1.09003 * 109.68311 * 350.28022 * 12 11 9 40 40 H 1.08996 * 109.68191 * 110.79358 * 12 11 9 41 41 H 1.08994 * 109.51224 * 67.62006 * 13 12 11 42 42 H 1.09000 * 109.51102 * 187.77253 * 13 12 11 43 43 H 1.09001 * 109.46917 * 179.74679 * 17 15 14 44 44 H 1.08994 * 109.47299 * 59.74432 * 17 15 14 45 45 H 0.97004 * 119.99895 * 0.02562 * 18 17 15 46 46 H 0.97004 * 119.99695 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.67840 * 9.71439 * 27 11 9 48 48 H 1.09003 * 109.67671 * 249.16647 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0136 -2.0221 1.3923 7 7 2.5316 -2.2505 2.5723 8 6 2.8485 -1.0573 3.1072 9 6 3.4594 -0.8338 4.4351 10 8 3.8329 0.2785 4.7528 11 7 3.6021 -1.8632 5.2932 12 6 3.0269 -3.1841 4.9940 13 6 2.2164 -3.6454 6.2107 14 8 3.0335 -3.5591 7.3806 15 6 3.4632 -2.2330 7.6978 16 1 2.5937 -1.5877 7.8225 17 6 4.2735 -2.2551 8.9954 18 7 3.4372 -2.7651 10.0848 19 6 3.9520 -2.8761 11.3489 20 1 4.9745 -2.5873 11.5428 21 6 3.1597 -3.3599 12.3809 22 7 1.9136 -3.7114 12.1446 23 14 3.8618 -3.5107 14.1054 24 1 5.2741 -3.0519 14.1068 25 1 3.0681 -2.6708 15.0381 26 1 3.8010 -4.9286 14.5424 27 6 4.3374 -1.6993 6.5573 28 7 2.5241 -0.1255 2.2379 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 1.6516 -2.7674 0.6996 39 1 2.3740 -3.1117 4.1241 40 1 3.8273 -3.8963 4.7938 41 1 1.3419 -3.0059 6.3293 42 1 1.8968 -4.6773 6.0652 43 1 4.6046 -1.2444 9.2342 44 1 5.1419 -2.9019 8.8706 45 1 2.5190 -3.0249 9.9105 46 1 1.3598 -4.0491 12.8659 47 1 4.5525 -0.6436 6.7226 48 1 5.2699 -2.2623 6.5152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724815783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:57 Heat of formation + Delta-G solvation = 46.014702 kcal Electronic energy + Delta-G solvation = -29549.035070 eV Core-core repulsion = 25449.557956 eV Total energy + Delta-G solvation = -4099.477114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.87446 -40.12461 -38.24219 -37.71992 -35.01433 -34.31195 -32.98557 -32.11953 -31.32155 -30.02939 -28.28661 -28.18816 -27.97234 -26.14139 -24.16906 -23.60915 -23.14217 -22.13596 -20.77356 -20.55478 -19.61809 -17.67926 -17.13619 -17.03422 -16.77152 -16.49418 -15.99223 -15.37178 -15.18808 -14.92239 -14.80677 -14.52120 -14.36450 -14.25066 -13.81892 -13.48835 -13.22983 -13.12986 -12.99855 -12.97204 -12.66458 -12.59438 -12.49593 -12.28348 -12.04416 -11.91793 -11.60380 -11.45615 -10.88401 -10.83837 -10.75465 -10.74449 -10.60050 -10.38863 -10.04139 -9.86203 -9.81018 -9.71338 -9.57855 -8.79873 -8.41948 -6.80996 -5.65824 -2.94002 1.16226 1.71650 1.77798 2.72914 3.20570 3.50642 3.55698 3.58360 3.67047 3.73695 3.94764 4.05930 4.13417 4.24115 4.42281 4.65974 4.71177 4.82354 4.89862 4.92580 4.95813 5.02813 5.11997 5.16999 5.24335 5.30763 5.38948 5.42145 5.45600 5.50104 5.64809 5.67110 5.76753 5.83341 5.92470 5.99184 6.05733 6.10748 6.24251 6.36920 6.51614 6.66466 6.79406 7.23501 7.60641 7.68354 7.79317 8.05719 8.52445 9.64100 10.22346 10.58517 11.57152 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031495 B = 0.002052 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.813395 B =13643.633538 C =13882.964630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.160 4.160 5 N -0.292 5.292 6 C 0.188 3.812 7 N -0.481 5.481 8 C 0.146 3.854 9 C 0.615 3.385 10 O -0.520 6.520 11 N -0.593 5.593 12 C 0.053 3.947 13 C 0.046 3.954 14 O -0.358 6.358 15 C 0.075 3.925 16 H 0.063 0.937 17 C 0.163 3.837 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.087 3.913 28 N -0.245 5.245 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.222 0.778 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.388 0.612 46 H 0.253 0.747 47 H 0.103 0.897 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 4.896 -34.370 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.088 5.088 6 C -0.106 4.106 7 N -0.207 5.207 8 C -0.133 4.133 9 C 0.398 3.602 10 O -0.393 6.393 11 N -0.326 5.326 12 C -0.070 4.070 13 C -0.032 4.032 14 O -0.276 6.276 15 C 0.016 3.984 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.370 5.370 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.036 4.036 28 N -0.083 5.083 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.222 0.778 46 H 0.063 0.937 47 H 0.121 0.879 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.824 5.741 -33.669 34.272 hybrid contribution -0.247 -0.337 0.375 0.561 sum -3.071 5.404 -33.295 33.870 Atomic orbital electron populations 1.22274 0.91570 1.03728 1.04280 1.21204 0.95414 0.94405 0.80557 1.22007 1.02622 0.92179 1.03897 1.22267 1.02733 1.01174 0.95652 1.47798 1.41279 1.06251 1.13479 1.26464 1.01340 0.86496 0.96307 1.71174 1.17280 1.25429 1.06824 1.23696 1.06221 0.85600 0.97830 1.16327 0.78610 0.84252 0.80987 1.90825 1.49944 1.22684 1.75892 1.47820 1.54109 1.11000 1.19695 1.23254 0.99809 0.83065 1.00876 1.22964 0.92948 1.02252 0.85029 1.88145 1.68617 1.27259 1.43612 1.22765 0.97044 0.84397 0.94221 0.91914 1.20629 0.93343 0.97479 0.85035 1.42225 1.13028 1.77561 1.04211 1.19288 0.96474 1.35595 0.85387 0.91078 1.24748 0.96110 1.02192 0.98126 1.69693 1.06789 1.50086 1.31501 0.86102 0.77964 0.77209 0.84843 1.20559 1.21980 1.21935 1.22435 0.95184 1.03995 0.81952 1.74310 1.13321 1.25344 0.95324 0.91135 0.89492 0.91254 0.91229 0.90228 0.90448 0.91064 0.89228 0.91108 0.76139 0.84739 0.90672 0.93250 0.87860 0.94644 0.95311 0.77817 0.93678 0.87906 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 8.72 37.16 0.32 -0.18 16 2 C 0.17 0.76 1.23 -131.81 -0.16 0.60 16 3 C -0.15 -0.78 8.04 37.16 0.30 -0.48 16 4 C -0.16 -0.32 8.28 37.16 0.31 -0.01 16 5 N -0.29 -2.41 3.17 -49.83 -0.16 -2.57 16 6 C 0.19 1.40 11.71 -90.48 -1.06 0.34 16 7 N -0.48 -5.33 7.92 -12.36 -0.10 -5.43 16 8 C 0.15 2.03 7.63 -156.35 -1.19 0.84 16 9 C 0.61 10.03 7.71 -12.32 -0.09 9.94 16 10 O -0.52 -9.96 16.56 5.31 0.09 -9.87 16 11 N -0.59 -9.04 3.02 -173.38 -0.52 -9.57 16 12 C 0.05 0.69 6.23 -3.53 -0.02 0.67 16 13 C 0.05 0.67 6.99 37.31 0.26 0.93 16 14 O -0.36 -6.80 10.14 -35.23 -0.36 -7.16 16 15 C 0.07 1.38 2.86 -26.58 -0.08 1.31 16 16 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.16 3.52 5.95 -4.04 -0.02 3.50 16 18 N -0.73 -19.63 5.50 -59.91 -0.33 -19.96 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -29.34 13.06 55.49 0.72 -28.62 16 23 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 27 C 0.09 1.38 5.94 -3.54 -0.02 1.36 16 28 N -0.24 -3.11 11.10 32.07 0.36 -2.75 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.55 8.02 -51.93 -0.42 0.14 16 35 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16 36 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.22 0.56 7.53 -52.49 -0.40 0.16 16 39 H 0.14 1.63 4.36 -53.62 -0.23 1.40 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.39 11.16 7.55 -40.82 -0.31 10.85 16 46 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.10 1.66 7.06 -51.93 -0.37 1.29 16 48 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -37.90 390.13 -8.72 -46.61 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.57 Total: 4.12 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.71 Total: 11.16 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.03 Total: -68.90 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.27 Total: -17.03 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.90 -8.72 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724815783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.629 kcal (2) G-P(sol) polarization free energy of solvation -37.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds