Wall clock time and date at job start Tue Mar 31 2020 20:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47213 * 2 1 4 4 C 1.52997 * 109.46952 * 240.00084 * 2 1 3 5 5 N 1.46500 * 109.47043 * 119.99842 * 2 1 3 6 6 C 1.34586 * 125.74436 * 74.98477 * 5 2 1 7 7 N 1.30872 * 107.62142 * 179.80123 * 6 5 2 8 8 C 1.34551 * 107.26778 * 0.36201 * 7 6 5 9 9 C 1.47871 * 126.04361 * 179.89135 * 8 7 6 10 10 O 1.21560 * 119.99693 * 172.07805 * 9 8 7 11 11 N 1.34771 * 120.00565 * 352.08124 * 9 8 7 12 12 C 1.47155 * 120.98009 * 353.22257 * 11 9 8 13 13 C 1.53297 * 108.38545 * 230.55826 * 12 11 9 14 14 O 1.42962 * 109.21967 * 307.69522 * 13 12 11 15 15 C 1.42962 * 114.16576 * 62.58174 * 14 13 12 16 16 H 1.08997 * 109.55649 * 57.36725 * 15 14 13 17 17 C 1.53001 * 109.51124 * 177.49395 * 15 14 13 18 18 N 1.46502 * 109.47184 * 299.74269 * 17 15 14 19 19 C 1.36937 * 120.00247 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99616 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00144 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99690 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47348 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46876 * 119.99885 * 23 21 19 26 26 H 1.48496 * 109.47207 * 239.99823 * 23 21 19 27 27 C 1.47153 * 120.98625 * 173.24538 * 11 9 8 28 28 N 1.28849 * 125.74751 * 255.01920 * 5 2 1 29 29 H 1.09004 * 109.46705 * 300.00138 * 1 2 3 30 30 H 1.08998 * 109.46912 * 59.99770 * 1 2 3 31 31 H 1.08993 * 109.47165 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46803 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46992 * 300.00072 * 3 2 1 34 34 H 1.08992 * 109.47024 * 60.00086 * 3 2 1 35 35 H 1.09000 * 109.46963 * 300.00014 * 4 2 1 36 36 H 1.09005 * 109.47282 * 59.99911 * 4 2 1 37 37 H 1.09000 * 109.47248 * 180.02562 * 4 2 1 38 38 H 1.07999 * 126.18927 * 0.03155 * 6 5 2 39 39 H 1.09003 * 109.68311 * 350.28022 * 12 11 9 40 40 H 1.08996 * 109.68191 * 110.79358 * 12 11 9 41 41 H 1.08994 * 109.51224 * 67.62006 * 13 12 11 42 42 H 1.09000 * 109.51102 * 187.77253 * 13 12 11 43 43 H 1.09001 * 109.46917 * 179.74679 * 17 15 14 44 44 H 1.08994 * 109.47299 * 59.74432 * 17 15 14 45 45 H 0.97004 * 119.99895 * 0.02562 * 18 17 15 46 46 H 0.97004 * 119.99695 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.67840 * 9.71439 * 27 11 9 48 48 H 1.09003 * 109.67671 * 249.16647 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0136 -2.0221 1.3923 7 7 2.5316 -2.2505 2.5723 8 6 2.8485 -1.0573 3.1072 9 6 3.4594 -0.8338 4.4351 10 8 3.8329 0.2785 4.7528 11 7 3.6021 -1.8632 5.2932 12 6 3.0269 -3.1841 4.9940 13 6 2.2164 -3.6454 6.2107 14 8 3.0335 -3.5591 7.3806 15 6 3.4632 -2.2330 7.6978 16 1 2.5937 -1.5877 7.8225 17 6 4.2735 -2.2551 8.9954 18 7 3.4372 -2.7651 10.0848 19 6 3.9520 -2.8761 11.3489 20 1 4.9745 -2.5873 11.5428 21 6 3.1597 -3.3599 12.3809 22 7 1.9136 -3.7114 12.1446 23 14 3.8618 -3.5107 14.1054 24 1 5.2741 -3.0519 14.1068 25 1 3.0681 -2.6708 15.0381 26 1 3.8010 -4.9286 14.5424 27 6 4.3374 -1.6993 6.5573 28 7 2.5241 -0.1255 2.2379 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 1.6516 -2.7674 0.6996 39 1 2.3740 -3.1117 4.1241 40 1 3.8273 -3.8963 4.7938 41 1 1.3419 -3.0059 6.3293 42 1 1.8968 -4.6773 6.0652 43 1 4.6046 -1.2444 9.2342 44 1 5.1419 -2.9019 8.8706 45 1 2.5190 -3.0249 9.9105 46 1 1.3598 -4.0491 12.8659 47 1 4.5525 -0.6436 6.7226 48 1 5.2699 -2.2623 6.5152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724815783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:56 Heat of formation + Delta-G solvation = 19.761715 kcal Electronic energy + Delta-G solvation = -29550.173485 eV Core-core repulsion = 25449.557956 eV Total energy + Delta-G solvation = -4100.615529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.62804 -41.38484 -39.53467 -38.25076 -36.69065 -35.86698 -34.02356 -33.61852 -32.27739 -31.67897 -29.44989 -28.48713 -28.39730 -27.68194 -25.56120 -24.78222 -24.13731 -23.60435 -22.26596 -21.13953 -20.69308 -19.23937 -18.53703 -17.98276 -17.67317 -17.62753 -17.20324 -16.76793 -16.46002 -16.04118 -15.92245 -15.68095 -15.29577 -15.05394 -15.03229 -14.95926 -14.44586 -14.31363 -14.14301 -13.87638 -13.44174 -13.30505 -13.23606 -13.14370 -12.82539 -12.79879 -12.75076 -12.63600 -12.38592 -12.25838 -12.02563 -12.00202 -11.93942 -11.77615 -11.55513 -11.47244 -11.26632 -10.96487 -10.79859 -10.62561 -9.69814 -9.00047 -7.92937 -5.22646 0.23479 1.02475 1.07477 1.48111 1.50085 1.60305 1.69443 2.10790 2.57170 2.72502 2.89189 3.20351 3.40689 3.50736 3.65391 3.67463 3.77459 3.84091 3.89930 3.97746 4.09183 4.18558 4.34776 4.42703 4.51631 4.55521 4.58270 4.59913 4.66805 4.69087 4.72118 4.78057 4.80632 4.85218 4.92884 4.97915 5.08796 5.11085 5.14320 5.21973 5.26538 5.40159 5.49671 5.72765 6.05536 6.22280 6.28782 6.69835 7.02664 7.34271 8.08052 8.33384 9.31173 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031495 B = 0.002052 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.813395 B =13643.633538 C =13882.964630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.285 5.285 6 C 0.206 3.794 7 N -0.496 5.496 8 C 0.118 3.882 9 C 0.610 3.390 10 O -0.562 6.562 11 N -0.593 5.593 12 C 0.061 3.939 13 C 0.042 3.958 14 O -0.385 6.385 15 C 0.088 3.912 16 H 0.046 0.954 17 C 0.161 3.839 18 N -0.740 5.740 19 C -0.245 4.245 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.970 5.970 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.096 3.904 28 N -0.270 5.270 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.275 0.725 39 H 0.151 0.849 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.129 0.871 43 H 0.045 0.955 44 H 0.034 0.966 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.097 0.903 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 3.814 -37.192 37.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.081 5.081 6 C -0.088 4.088 7 N -0.223 5.223 8 C -0.160 4.160 9 C 0.396 3.604 10 O -0.438 6.438 11 N -0.326 5.326 12 C -0.060 4.060 13 C -0.035 4.035 14 O -0.304 6.304 15 C 0.029 3.971 16 H 0.064 0.936 17 C 0.034 3.966 18 N -0.383 5.383 19 C -0.377 4.377 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.621 5.621 23 Si 0.808 3.192 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.027 4.027 28 N -0.111 5.111 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.290 0.710 39 H 0.168 0.832 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.147 0.853 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.978 4.658 -36.540 36.956 hybrid contribution -0.249 0.034 1.052 1.081 sum -3.227 4.692 -35.488 35.942 Atomic orbital electron populations 1.22295 0.90071 1.04769 1.04315 1.21680 0.96469 0.93952 0.80203 1.22022 1.01468 0.93209 1.04029 1.22309 1.01950 1.02418 0.94652 1.48200 1.39916 1.06895 1.13122 1.27392 0.98905 0.86877 0.95608 1.71012 1.18363 1.24456 1.08478 1.23210 1.08357 0.87061 0.97376 1.16701 0.78037 0.83689 0.81994 1.90782 1.51826 1.24176 1.77038 1.47888 1.53846 1.11696 1.19138 1.23340 1.00137 0.82012 1.00541 1.23223 0.92387 1.03780 0.84111 1.88089 1.69467 1.27111 1.45706 1.22462 0.96394 0.84428 0.93842 0.93584 1.20772 0.93212 0.97498 0.85105 1.42416 1.13027 1.77840 1.05013 1.19729 0.96832 1.34656 0.86467 0.90241 1.25657 0.96570 1.02581 1.02373 1.69861 1.08204 1.51486 1.32578 0.84986 0.77915 0.76836 0.79472 1.18837 1.22010 1.21921 1.22242 0.95158 1.03673 0.81670 1.74238 1.13969 1.26348 0.96511 0.93660 0.86899 0.89700 0.93006 0.87224 0.93171 0.88854 0.86858 0.92377 0.70969 0.83218 0.89578 0.93866 0.85348 0.93690 0.94795 0.79331 0.94030 0.88459 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 8.72 71.98 0.63 0.09 16 2 C 0.16 1.07 1.23 3.61 0.00 1.07 16 3 C -0.15 -1.45 8.04 71.98 0.58 -0.87 16 4 C -0.16 -0.02 8.28 71.98 0.60 0.57 16 5 N -0.28 -4.25 3.17 -311.57 -0.99 -5.24 16 6 C 0.21 2.44 11.71 180.30 2.11 4.55 16 7 N -0.50 -10.17 7.92 -193.03 -1.53 -11.70 16 8 C 0.12 3.29 7.63 137.13 1.05 4.34 16 9 C 0.61 20.54 7.71 86.79 0.67 21.21 16 10 O -0.56 -22.63 16.56 -3.90 -0.06 -22.70 16 11 N -0.59 -18.25 3.02 -820.73 -2.48 -20.73 16 12 C 0.06 1.55 6.23 86.35 0.54 2.09 16 13 C 0.04 1.20 6.99 72.08 0.50 1.71 16 14 O -0.38 -14.72 10.14 -148.98 -1.51 -16.23 16 15 C 0.09 3.33 2.86 30.69 0.09 3.41 16 16 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 17 C 0.16 7.04 5.95 86.38 0.51 7.55 16 18 N -0.74 -40.83 5.50 -343.44 -1.89 -42.72 16 19 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 22 N -0.97 -62.26 13.06 21.65 0.28 -61.98 16 23 Si 0.98 47.98 29.55 68.60 2.03 50.01 16 24 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 27 C 0.10 3.09 5.94 86.35 0.51 3.60 16 28 N -0.27 -6.92 11.10 -52.44 -0.58 -7.50 16 29 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.05 0.76 8.02 -2.39 -0.02 0.74 16 35 H 0.09 -0.37 7.34 -2.39 -0.02 -0.38 16 36 H 0.11 -0.46 8.14 -2.38 -0.02 -0.48 16 37 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.27 -0.11 7.53 -2.91 -0.02 -0.13 16 39 H 0.15 3.42 4.36 -5.73 -0.02 3.39 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.37 22.27 7.55 -92.71 -0.70 21.57 16 46 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.10 3.26 7.06 -2.39 -0.02 3.24 16 48 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -85.83 390.13 2.62 -83.21 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.25 Total: 24.21 kcal Atomic # 6 Polarization: 22.26 SS G_CDS: 9.10 Total: 31.36 kcal Atomic # 7 Polarization: -142.68 SS G_CDS: -7.18 Total: -149.86 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.58 Total: -38.92 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -85.83 2.62 -83.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724815783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.970 kcal (2) G-P(sol) polarization free energy of solvation -85.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds