Wall clock time and date at job start Tue Mar 31 2020 20:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47201 * 2 1 4 4 N 1.46502 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99745 * 270.00106 * 4 3 2 6 6 H 1.08000 * 120.00081 * 326.21084 * 5 4 3 7 7 C 1.38819 * 120.00122 * 146.21995 * 5 4 3 8 8 N 1.31617 * 119.99521 * 337.67649 * 7 5 4 9 9 Si 1.86793 * 120.00094 * 157.68038 * 7 5 4 10 10 H 1.48494 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47513 * 119.99972 * 9 7 5 12 12 H 1.48507 * 109.46891 * 239.99390 * 9 7 5 13 13 C 1.46502 * 119.99896 * 89.99534 * 4 3 2 14 14 C 1.53003 * 109.46820 * 85.79981 * 13 4 3 15 15 N 1.46494 * 109.47020 * 179.97438 * 14 13 4 16 16 C 1.34783 * 120.00002 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.50695 * 119.99737 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.44694 * 300.00054 * 18 16 15 20 20 C 1.53124 * 109.44067 * 180.02562 * 18 16 15 21 21 C 1.53483 * 109.37833 * 170.17244 * 20 18 16 22 22 C 1.50807 * 108.06152 * 48.92310 * 21 20 18 23 23 N 1.29605 * 128.72876 * 163.99057 * 22 21 20 24 24 N 1.28878 * 109.78822 * 180.19207 * 23 22 21 25 25 C 1.31379 * 109.92976 * 359.97262 * 24 23 22 26 26 O 1.35538 * 126.57301 * 179.97438 * 25 24 23 27 27 N 1.35428 * 106.84704 * 359.95403 * 25 24 23 28 28 C 1.46198 * 129.14339 * 180.14567 * 27 25 24 29 29 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46670 * 300.00013 * 1 2 3 31 31 H 1.08998 * 109.47391 * 60.00036 * 1 2 3 32 32 H 1.09007 * 109.47086 * 239.99650 * 2 1 3 33 33 H 1.09002 * 109.46980 * 120.00226 * 2 1 3 34 34 H 1.09001 * 109.46611 * 299.99848 * 3 2 1 35 35 H 1.08997 * 109.47262 * 60.00330 * 3 2 1 36 36 H 0.97002 * 120.00014 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46934 * 205.79211 * 13 4 3 38 38 H 1.08995 * 109.47410 * 325.79584 * 13 4 3 39 39 H 1.08999 * 109.46738 * 299.99349 * 14 13 4 40 40 H 1.08995 * 109.47453 * 59.99629 * 14 13 4 41 41 H 0.97006 * 120.00119 * 359.97438 * 15 14 13 42 42 H 1.09005 * 109.48641 * 290.16781 * 20 18 16 43 43 H 1.08999 * 109.48955 * 50.22712 * 20 18 16 44 44 H 1.09008 * 109.75491 * 289.28366 * 21 20 18 45 45 H 1.08999 * 109.78564 * 168.58704 * 21 20 18 46 46 H 0.96701 * 113.99199 * 269.99026 * 26 25 24 47 47 H 1.09004 * 109.60364 * 43.21341 * 28 27 25 48 48 H 1.08994 * 109.60709 * 282.72332 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 3.7873 1.9623 2.0416 7 6 5.4026 0.7738 1.2860 8 7 5.6914 -0.1959 0.4442 9 14 6.6241 1.2505 2.6164 10 1 6.0646 2.3620 3.4268 11 1 6.8833 0.0801 3.4928 12 1 7.8957 1.6887 1.9868 13 6 4.2370 1.4425 -1.2697 14 6 4.4003 2.8812 -1.7641 15 7 5.1327 2.8814 -3.0328 16 6 5.3950 4.0456 -3.6594 17 8 5.0242 5.0929 -3.1731 18 6 6.1490 4.0457 -4.9642 19 1 7.1321 3.5991 -4.8153 20 6 6.3119 5.4858 -5.4585 21 6 7.2828 5.5095 -6.6469 22 6 6.8533 4.4431 -7.6229 23 7 7.1958 4.2944 -8.8640 24 7 6.6082 3.2590 -9.3577 25 6 5.8551 2.6925 -8.4423 26 8 5.0902 1.5845 -8.5983 27 7 5.9901 3.4276 -7.3130 28 6 5.3709 3.2297 -6.0035 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 6.5385 -0.6633 0.5149 37 1 5.2200 0.9954 -1.1221 38 1 3.6824 0.8649 -2.0091 39 1 3.4172 3.3284 -1.9117 40 1 4.9549 3.4588 -1.0247 41 1 5.4290 2.0437 -3.4220 42 1 5.3430 5.8744 -5.7722 43 1 6.7084 6.1040 -4.6531 44 1 8.2955 5.3043 -6.2995 45 1 7.2503 6.4858 -7.1305 46 1 4.1871 1.7682 -8.8912 47 1 5.4050 2.1729 -5.7387 48 1 4.3353 3.5684 -6.0336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731865811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:20 Heat of formation + Delta-G solvation = 15.123349 kcal Electronic energy + Delta-G solvation = -29483.461474 eV Core-core repulsion = 25382.644810 eV Total energy + Delta-G solvation = -4100.816664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.53520 -40.04993 -38.05269 -37.17294 -36.49743 -34.57242 -33.60176 -32.93885 -31.62384 -30.80130 -29.17302 -28.08638 -25.65826 -25.41617 -23.99750 -22.96194 -22.63283 -21.52091 -20.88126 -20.03617 -19.66766 -19.28678 -17.45804 -17.21522 -16.85435 -16.47561 -15.81271 -15.35675 -15.15263 -15.01819 -14.83742 -14.63648 -14.37885 -14.18396 -14.00692 -13.71716 -13.12263 -12.96782 -12.82500 -12.75204 -12.42741 -12.15818 -12.05304 -11.98914 -11.61686 -11.41271 -11.36588 -11.12337 -10.99107 -10.85426 -10.60848 -10.54426 -10.49295 -10.35039 -10.10503 -10.06259 -9.83520 -9.74037 -9.31611 -8.80964 -8.61777 -6.79555 -5.95131 -3.47684 1.26462 1.73557 2.41655 2.54726 3.14598 3.27500 3.36884 3.39052 3.40085 3.79077 3.97899 4.12903 4.24370 4.38740 4.58077 4.72238 4.81960 4.87123 5.06343 5.17682 5.17968 5.29899 5.36024 5.47915 5.58585 5.62819 5.66188 5.74044 5.76122 5.92969 6.03271 6.03895 6.16127 6.18502 6.35004 6.42904 6.52490 6.57595 6.63782 6.87589 6.95574 6.96415 7.15248 7.43516 7.62093 7.69627 8.23730 8.33908 8.34687 9.02544 9.65864 10.20917 11.06569 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.002691 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.096099 B =10403.408052 C =11380.747861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.065 0.935 7 C 0.009 3.991 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.135 3.865 14 C 0.096 3.904 15 N -0.716 5.716 16 C 0.516 3.484 17 O -0.534 6.534 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.107 4.107 21 C -0.034 4.034 22 C 0.193 3.807 23 N -0.276 5.276 24 N -0.289 5.289 25 C 0.353 3.647 26 O -0.434 6.434 27 N -0.481 5.481 28 C 0.115 3.885 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.398 0.602 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.407 0.593 47 H 0.105 0.895 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 6.291 -13.548 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.083 0.917 7 C -0.191 4.191 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.214 1.214 13 C 0.007 3.993 14 C -0.029 4.029 15 N -0.366 5.366 16 C 0.299 3.701 17 O -0.411 6.411 18 C -0.147 4.147 19 H 0.129 0.871 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.074 4.074 23 N -0.118 5.118 24 N -0.140 5.140 25 C 0.048 3.952 26 O -0.234 6.234 27 N -0.184 5.184 28 C -0.008 4.008 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.127 0.873 46 H 0.264 0.736 47 H 0.124 0.876 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.334 6.703 -14.310 15.858 hybrid contribution -0.391 -0.702 1.575 1.767 sum -1.725 6.001 -12.736 14.184 Atomic orbital electron populations 1.21761 0.97719 1.00375 1.00722 1.22069 0.93094 1.00725 1.02070 1.20977 0.85005 0.93563 0.98377 1.43711 0.99501 1.84847 1.01921 1.19155 1.02672 1.26460 0.90396 0.91719 1.25086 1.00625 0.95180 0.98171 1.69972 1.23466 1.20499 1.39178 0.86325 0.81377 0.78208 0.81512 1.20006 1.21606 1.21430 1.21080 1.01332 0.90222 0.86661 1.22453 0.94749 1.03153 0.82540 1.46199 1.57315 1.08071 1.25015 1.19975 0.80141 0.84502 0.85441 1.90725 1.52146 1.31275 1.66940 1.21740 1.01141 0.98739 0.93057 0.87050 1.21564 1.00760 0.94418 0.97769 1.20364 1.00312 0.95010 0.91637 1.24729 0.94954 0.92501 0.95187 1.74034 1.20616 1.11319 1.05824 1.74857 1.10927 1.05071 1.23106 1.21834 0.99586 0.89894 0.83865 1.84929 1.27955 1.22204 1.88300 1.46628 1.37103 1.22622 1.12040 1.21961 0.97624 1.02590 0.78656 0.93837 0.93351 0.93696 0.93136 0.91839 0.94874 0.93758 0.93551 0.87620 0.95532 0.93057 0.91483 0.76873 0.90261 0.88125 0.88128 0.87314 0.73573 0.87633 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.55 6.26 -26.73 -0.17 -2.72 16 3 C 0.15 2.85 5.69 -4.04 -0.02 2.83 16 4 N -0.58 -13.10 2.45 -173.24 -0.43 -13.53 16 5 C -0.26 -6.53 9.49 -15.06 -0.14 -6.67 16 6 H 0.07 1.67 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.24 4.93 -17.43 -0.09 0.15 16 8 N -0.89 -23.50 11.32 55.49 0.63 -22.87 16 9 Si 0.90 20.52 29.61 -169.99 -5.03 15.48 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.13 2.73 5.37 -4.04 -0.02 2.71 16 14 C 0.10 1.71 6.00 -4.04 -0.02 1.69 16 15 N -0.72 -9.71 5.46 -60.30 -0.33 -10.04 16 16 C 0.52 6.67 7.14 -10.98 -0.08 6.59 16 17 O -0.53 -8.97 15.82 5.56 0.09 -8.89 16 18 C -0.12 -1.11 2.53 -91.53 -0.23 -1.34 16 19 H 0.11 0.89 8.12 -51.93 -0.42 0.47 16 20 C -0.11 -0.87 4.68 -26.42 -0.12 -0.99 16 21 C -0.03 -0.25 6.34 -27.58 -0.17 -0.42 16 22 C 0.19 2.05 7.78 -154.44 -1.20 0.85 16 23 N -0.28 -3.72 12.18 32.93 0.40 -3.32 16 24 N -0.29 -4.04 12.24 29.53 0.36 -3.67 16 25 C 0.35 3.97 9.30 -89.29 -0.83 3.14 16 26 O -0.43 -3.74 13.64 -18.31 -0.25 -3.99 16 27 N -0.48 -4.74 3.16 -115.37 -0.36 -5.10 16 28 C 0.11 0.91 6.16 -4.03 -0.02 0.89 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.11 2.45 5.32 -51.93 -0.28 2.17 16 38 H 0.03 0.51 8.10 -51.93 -0.42 0.08 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.40 4.49 8.11 -40.82 -0.33 4.15 16 42 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 43 H 0.10 0.86 7.77 -51.93 -0.40 0.46 16 44 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.41 1.33 9.06 45.56 0.41 1.74 16 47 H 0.11 0.74 7.86 -51.93 -0.41 0.33 16 48 H 0.10 0.70 8.12 -51.93 -0.42 0.28 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -32.95 394.97 -8.62 -41.57 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.88 Total: 3.49 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.76 Total: 4.93 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.27 Total: -58.54 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.16 Total: -12.88 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.95 -8.62 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731865811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.692 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds