Wall clock time and date at job start Tue Mar 31 2020 20:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47201 * 2 1 4 4 N 1.46502 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99745 * 270.00106 * 4 3 2 6 6 H 1.08000 * 120.00081 * 326.21084 * 5 4 3 7 7 C 1.38819 * 120.00122 * 146.21995 * 5 4 3 8 8 N 1.31617 * 119.99521 * 337.67649 * 7 5 4 9 9 Si 1.86793 * 120.00094 * 157.68038 * 7 5 4 10 10 H 1.48494 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47513 * 119.99972 * 9 7 5 12 12 H 1.48507 * 109.46891 * 239.99390 * 9 7 5 13 13 C 1.46502 * 119.99896 * 89.99534 * 4 3 2 14 14 C 1.53003 * 109.46820 * 85.79981 * 13 4 3 15 15 N 1.46494 * 109.47020 * 179.97438 * 14 13 4 16 16 C 1.34783 * 120.00002 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.50695 * 119.99737 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.44694 * 300.00054 * 18 16 15 20 20 C 1.53124 * 109.44067 * 180.02562 * 18 16 15 21 21 C 1.53483 * 109.37833 * 170.17244 * 20 18 16 22 22 C 1.50807 * 108.06152 * 48.92310 * 21 20 18 23 23 N 1.29605 * 128.72876 * 163.99057 * 22 21 20 24 24 N 1.28878 * 109.78822 * 180.19207 * 23 22 21 25 25 C 1.31379 * 109.92976 * 359.97262 * 24 23 22 26 26 O 1.35538 * 126.57301 * 179.97438 * 25 24 23 27 27 N 1.35428 * 106.84704 * 359.95403 * 25 24 23 28 28 C 1.46198 * 129.14339 * 180.14567 * 27 25 24 29 29 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46670 * 300.00013 * 1 2 3 31 31 H 1.08998 * 109.47391 * 60.00036 * 1 2 3 32 32 H 1.09007 * 109.47086 * 239.99650 * 2 1 3 33 33 H 1.09002 * 109.46980 * 120.00226 * 2 1 3 34 34 H 1.09001 * 109.46611 * 299.99848 * 3 2 1 35 35 H 1.08997 * 109.47262 * 60.00330 * 3 2 1 36 36 H 0.97002 * 120.00014 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46934 * 205.79211 * 13 4 3 38 38 H 1.08995 * 109.47410 * 325.79584 * 13 4 3 39 39 H 1.08999 * 109.46738 * 299.99349 * 14 13 4 40 40 H 1.08995 * 109.47453 * 59.99629 * 14 13 4 41 41 H 0.97006 * 120.00119 * 359.97438 * 15 14 13 42 42 H 1.09005 * 109.48641 * 290.16781 * 20 18 16 43 43 H 1.08999 * 109.48955 * 50.22712 * 20 18 16 44 44 H 1.09008 * 109.75491 * 289.28366 * 21 20 18 45 45 H 1.08999 * 109.78564 * 168.58704 * 21 20 18 46 46 H 0.96701 * 113.99199 * 269.99026 * 26 25 24 47 47 H 1.09004 * 109.60364 * 43.21341 * 28 27 25 48 48 H 1.08994 * 109.60709 * 282.72332 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 3.7873 1.9623 2.0416 7 6 5.4026 0.7738 1.2860 8 7 5.6914 -0.1959 0.4442 9 14 6.6241 1.2505 2.6164 10 1 6.0646 2.3620 3.4268 11 1 6.8833 0.0801 3.4928 12 1 7.8957 1.6887 1.9868 13 6 4.2370 1.4425 -1.2697 14 6 4.4003 2.8812 -1.7641 15 7 5.1327 2.8814 -3.0328 16 6 5.3950 4.0456 -3.6594 17 8 5.0242 5.0929 -3.1731 18 6 6.1490 4.0457 -4.9642 19 1 7.1321 3.5991 -4.8153 20 6 6.3119 5.4858 -5.4585 21 6 7.2828 5.5095 -6.6469 22 6 6.8533 4.4431 -7.6229 23 7 7.1958 4.2944 -8.8640 24 7 6.6082 3.2590 -9.3577 25 6 5.8551 2.6925 -8.4423 26 8 5.0902 1.5845 -8.5983 27 7 5.9901 3.4276 -7.3130 28 6 5.3709 3.2297 -6.0035 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 6.5385 -0.6633 0.5149 37 1 5.2200 0.9954 -1.1221 38 1 3.6824 0.8649 -2.0091 39 1 3.4172 3.3284 -1.9117 40 1 4.9549 3.4588 -1.0247 41 1 5.4290 2.0437 -3.4220 42 1 5.3430 5.8744 -5.7722 43 1 6.7084 6.1040 -4.6531 44 1 8.2955 5.3043 -6.2995 45 1 7.2503 6.4858 -7.1305 46 1 4.1871 1.7682 -8.8912 47 1 5.4050 2.1729 -5.7387 48 1 4.3353 3.5684 -6.0336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731865811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:19 Heat of formation + Delta-G solvation = -9.163482 kcal Electronic energy + Delta-G solvation = -29484.514630 eV Core-core repulsion = 25382.644810 eV Total energy + Delta-G solvation = -4101.869820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.34480 -41.11469 -38.74456 -38.36880 -37.79077 -35.86176 -34.56879 -34.33173 -32.83344 -32.15052 -30.13753 -29.36201 -27.32691 -26.25826 -25.14963 -24.10961 -23.42573 -23.00840 -21.88645 -21.53425 -20.59444 -20.03677 -18.81063 -18.10480 -17.95624 -17.57131 -16.95536 -16.91077 -16.30957 -15.95450 -15.83801 -15.76819 -15.56659 -15.27824 -15.08031 -14.93624 -14.63772 -14.21079 -14.09879 -13.63740 -13.56459 -13.30014 -13.04046 -12.93499 -12.84494 -12.77088 -12.54177 -12.50658 -12.29347 -12.13306 -12.08233 -12.03384 -11.80372 -11.71618 -11.35016 -11.32150 -11.24899 -10.99110 -10.55893 -10.14302 -10.07199 -8.63800 -7.87368 -5.42276 0.52009 0.97223 1.42739 1.48799 1.51572 1.56786 1.58379 2.07960 2.50884 2.68188 3.08175 3.21350 3.25395 3.43578 3.48652 3.77339 3.89083 4.01640 4.09921 4.23725 4.26880 4.34393 4.38567 4.40036 4.53298 4.57358 4.62742 4.68496 4.79975 4.81307 4.84107 4.95673 4.97734 4.99055 5.12409 5.16986 5.25457 5.28871 5.38077 5.46758 5.52087 5.61383 5.67452 5.81485 6.39836 6.43030 6.52966 7.13062 7.18670 7.50051 7.84038 8.33103 9.10552 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.002691 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.096099 B =10403.408052 C =11380.747861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.598 5.598 5 C -0.264 4.264 6 H 0.054 0.946 7 C -0.031 4.031 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.289 1.289 13 C 0.142 3.858 14 C 0.119 3.881 15 N -0.710 5.710 16 C 0.522 3.478 17 O -0.572 6.572 18 C -0.112 4.112 19 H 0.127 0.873 20 C -0.101 4.101 21 C -0.026 4.026 22 C 0.197 3.803 23 N -0.312 5.312 24 N -0.331 5.331 25 C 0.360 3.640 26 O -0.437 6.437 27 N -0.478 5.478 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.252 0.748 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.411 0.589 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.125 0.875 46 H 0.429 0.571 47 H 0.120 0.880 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 6.612 -14.222 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.318 5.318 5 C -0.394 4.394 6 H 0.072 0.928 7 C -0.228 4.228 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.215 1.215 13 C 0.015 3.985 14 C -0.008 4.008 15 N -0.362 5.362 16 C 0.307 3.693 17 O -0.451 6.451 18 C -0.134 4.134 19 H 0.145 0.855 20 C -0.140 4.140 21 C -0.065 4.065 22 C -0.071 4.071 23 N -0.152 5.152 24 N -0.182 5.182 25 C 0.054 3.946 26 O -0.240 6.240 27 N -0.181 5.181 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.247 0.753 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.291 0.709 47 H 0.138 0.862 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.991 7.015 -15.020 16.697 hybrid contribution -0.276 -0.808 1.787 1.980 sum -2.266 6.207 -13.234 14.792 Atomic orbital electron populations 1.21671 0.94341 1.01645 1.01974 1.21914 0.95997 0.99230 0.99901 1.21095 0.83377 0.94457 0.99213 1.43945 1.00892 1.85126 1.01857 1.19277 1.03156 1.25789 0.91224 0.92783 1.25595 1.01826 0.95433 0.99990 1.70067 1.23572 1.21302 1.40465 0.85526 0.79570 0.77638 0.79615 1.19802 1.21923 1.21537 1.20942 0.99869 0.91510 0.86206 1.21853 0.94633 1.00678 0.83614 1.46017 1.57108 1.09314 1.23715 1.20532 0.79223 0.83306 0.86207 1.90717 1.53604 1.32562 1.68222 1.21649 1.01141 0.99823 0.90795 0.85503 1.21521 1.00889 0.93672 0.97908 1.20495 1.00683 0.94873 0.90484 1.25280 0.94145 0.92780 0.94860 1.73944 1.21993 1.11973 1.07325 1.74752 1.12537 1.06193 1.24707 1.21858 0.99137 0.89811 0.83822 1.84892 1.29428 1.21324 1.88370 1.46668 1.36991 1.22221 1.12221 1.22064 0.97766 1.03294 0.77448 0.92607 0.92683 0.91838 0.94108 0.95163 0.92714 0.94108 0.93859 0.90203 0.94241 0.93127 0.94754 0.75273 0.90600 0.88340 0.86440 0.85674 0.70885 0.86205 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.68 6.26 30.59 0.19 -4.49 16 3 C 0.14 5.48 5.69 86.38 0.49 5.97 16 4 N -0.60 -27.06 2.45 -702.00 -1.72 -28.78 16 5 C -0.26 -13.57 9.49 84.04 0.80 -12.78 16 6 H 0.05 2.84 7.92 -2.91 -0.02 2.81 16 7 C -0.03 -1.60 4.93 84.86 0.42 -1.18 16 8 N -0.91 -48.65 11.32 21.65 0.25 -48.41 16 9 Si 0.95 42.56 29.61 68.60 2.03 44.59 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 13 C 0.14 5.71 5.37 86.38 0.46 6.17 16 14 C 0.12 4.16 6.00 86.38 0.52 4.68 16 15 N -0.71 -18.24 5.46 -463.08 -2.53 -20.77 16 16 C 0.52 12.59 7.14 87.65 0.63 13.22 16 17 O -0.57 -18.64 15.82 -3.02 -0.05 -18.69 16 18 C -0.11 -1.71 2.53 -11.39 -0.03 -1.74 16 19 H 0.13 1.63 8.12 -2.39 -0.02 1.61 16 20 C -0.10 -1.41 4.68 30.80 0.14 -1.27 16 21 C -0.03 -0.32 6.34 30.04 0.19 -0.12 16 22 C 0.20 3.82 7.78 137.84 1.07 4.90 16 23 N -0.31 -8.16 12.18 -49.72 -0.61 -8.76 16 24 N -0.33 -9.07 12.24 -173.86 -2.13 -11.20 16 25 C 0.36 7.55 9.30 179.88 1.67 9.22 16 26 O -0.44 -6.66 13.64 -88.42 -1.21 -7.87 16 27 N -0.48 -8.40 3.16 -630.21 -1.99 -10.39 16 28 C 0.12 1.53 6.16 86.55 0.53 2.06 16 29 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 35 H 0.04 1.56 8.04 -2.39 -0.02 1.54 16 36 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.08 3.72 5.32 -2.39 -0.01 3.71 16 38 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.41 8.46 8.11 -92.70 -0.75 7.71 16 42 H 0.08 1.13 8.12 -2.38 -0.02 1.11 16 43 H 0.10 1.48 7.77 -2.39 -0.02 1.46 16 44 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.43 1.85 9.06 -74.06 -0.67 1.18 16 47 H 0.12 1.28 7.86 -2.38 -0.02 1.26 16 48 H 0.11 1.24 8.12 -2.39 -0.02 1.22 16 Total: -1.00 -72.58 394.97 -0.59 -73.16 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.44 Total: 15.42 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 7.80 Total: 21.68 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -8.73 Total: -128.31 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.25 Total: -26.55 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.58 -0.59 -73.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731865811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.000 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds