Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.46857 * 179.97438 * 9 7 6 11 11 C 1.35035 * 126.40314 * 265.02628 * 10 9 7 12 12 N 1.30500 * 108.70473 * 180.02562 * 11 10 9 13 13 C 1.34122 * 109.25254 * 0.02562 * 12 11 10 14 14 C 1.34670 * 108.02520 * 359.73032 * 13 12 11 15 15 C 1.50702 * 126.59541 * 180.28303 * 14 13 12 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47180 * 90.00047 * 25 23 21 27 27 H 1.48507 * 109.46968 * 209.99620 * 25 23 21 28 28 H 1.48494 * 109.47603 * 329.99747 * 25 23 21 29 29 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 30 30 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 31 31 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.08007 * 125.64769 * 0.03420 * 11 10 9 40 40 H 1.08006 * 125.98674 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46932 * 270.16611 * 15 14 13 42 42 H 1.08994 * 109.46800 * 30.16365 * 15 14 13 43 43 H 1.08992 * 109.46863 * 150.16299 * 15 14 13 44 44 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 45 45 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 46 46 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 47 47 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 7 7.3586 4.4764 0.0599 11 6 8.2112 4.4582 1.1070 12 7 9.4340 4.4659 0.6512 13 6 9.4061 4.4896 -0.6895 14 6 8.1171 4.4909 -1.0795 15 6 7.6076 4.5080 -2.4977 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 3.0625 1.0278 7.3408 25 14 1.5598 2.8433 8.7958 26 1 0.3506 2.1360 9.2885 27 1 2.6145 2.8073 9.8406 28 1 1.2165 4.2548 8.4875 29 1 -0.3633 0.5927 -0.8396 30 1 -0.3633 -1.0234 -0.0937 31 1 -0.3633 0.4307 0.9330 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 7.9279 4.4400 2.1491 40 1 10.2666 4.5013 -1.3420 41 1 7.4845 5.5397 -2.8271 42 1 8.3225 4.0022 -3.1466 43 1 6.6474 3.9945 -2.5449 44 1 1.7982 3.1043 1.1910 45 1 1.9988 0.4462 2.4506 46 1 3.3252 1.6286 2.3450 47 1 2.8316 1.0718 4.9357 48 1 3.3839 0.7444 8.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732210184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = -8.687375 kcal Electronic energy + Delta-G solvation = -29376.177152 eV Core-core repulsion = 25274.327977 eV Total energy + Delta-G solvation = -4101.849174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29820 -40.12498 -38.67655 -37.38188 -34.32958 -34.22684 -33.96146 -32.14110 -32.07067 -31.25453 -29.43610 -27.69142 -26.59189 -26.44095 -24.34408 -23.46542 -21.61603 -21.23680 -20.50040 -19.92998 -19.17266 -17.98806 -17.92795 -17.42777 -16.93632 -15.97603 -15.88299 -15.54505 -15.25733 -14.80996 -14.51193 -14.34823 -14.23759 -14.00611 -13.83691 -13.77615 -13.55141 -13.38322 -13.20253 -13.01152 -12.87671 -12.64584 -12.55023 -12.24302 -12.00434 -11.75187 -11.53563 -11.39413 -11.08940 -10.97099 -10.68998 -10.59205 -10.43899 -10.27107 -10.05495 -9.64752 -9.56570 -9.45424 -8.59316 -8.40472 -8.20026 -8.02528 -6.46911 -3.88422 1.76443 2.17390 2.36885 2.90558 3.11415 3.13843 3.23290 3.28161 3.82776 3.99448 4.20143 4.24504 4.28656 4.48725 4.52444 4.58586 4.65956 4.75478 4.90074 5.00003 5.09910 5.19270 5.23785 5.24192 5.25694 5.41239 5.45942 5.55512 5.61125 5.64841 5.70913 5.79710 5.88245 5.99551 6.03295 6.14644 6.18876 6.21920 6.46927 6.61614 6.91958 7.01340 7.08546 7.42634 7.49728 7.77522 7.97336 7.99744 8.54322 9.11902 9.47780 9.98373 10.70533 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008670 B = 0.003089 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.781267 B = 9061.047613 C =11620.149973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.081 3.919 6 N -0.724 5.724 7 C 0.497 3.503 8 O -0.517 6.517 9 C 0.084 3.916 10 N -0.443 5.443 11 C 0.194 3.806 12 N -0.491 5.491 13 C -0.029 4.029 14 C -0.019 4.019 15 C -0.075 4.075 16 N -0.652 5.652 17 C 0.044 3.956 18 C 0.439 3.561 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.899 5.899 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.205 0.795 40 H 0.167 0.833 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.344 0.656 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 3.761 -19.868 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.108 0.892 5 C -0.045 4.045 6 N -0.378 5.378 7 C 0.280 3.720 8 O -0.391 6.391 9 C -0.043 4.043 10 N -0.126 5.126 11 C -0.088 4.088 12 N -0.208 5.208 13 C -0.176 4.176 14 C -0.132 4.132 15 C -0.133 4.133 16 N -0.283 5.283 17 C -0.089 4.089 18 C 0.225 3.775 19 O -0.469 6.469 20 N -0.198 5.198 21 C -0.431 4.431 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.540 5.540 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.222 0.778 40 H 0.185 0.815 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.164 0.836 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.040 3.238 -19.286 19.969 hybrid contribution -0.029 0.442 0.519 0.683 sum 4.011 3.680 -18.767 19.540 Atomic orbital electron populations 1.21615 0.94489 1.00669 1.03115 1.21504 0.97456 0.94173 1.02051 1.21995 0.90033 0.97399 0.93954 0.89247 1.22251 0.96736 0.82583 1.02900 1.45893 1.06787 1.10289 1.74784 1.20700 0.82763 0.91177 0.77345 1.90808 1.55309 1.45608 1.47417 1.21676 0.79446 0.95964 1.07257 1.44863 1.05525 1.55107 1.07144 1.24983 0.84468 1.05042 0.94346 1.70280 1.20800 1.19450 1.10312 1.22005 0.94973 1.08846 0.91795 1.21189 0.92042 1.10858 0.89151 1.20183 1.01557 1.02250 0.89292 1.60202 1.60920 1.07305 0.99911 1.21785 0.96445 1.00134 0.90521 1.19768 0.86295 0.87175 0.84292 1.90522 1.36815 1.33089 1.86498 1.41874 1.39664 1.33603 1.04661 1.19682 1.23585 1.16734 0.83094 0.87922 1.25271 0.96476 0.96680 0.99422 1.69608 1.30544 1.27870 1.26023 0.85867 0.78261 0.79648 0.80571 1.20353 1.20884 1.19411 0.93179 0.93470 0.90984 0.91790 0.91426 0.90637 0.91021 0.76409 0.86193 0.85315 0.77835 0.81536 0.91036 0.89948 0.92116 0.83644 0.89286 0.93650 0.77516 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.71 37.16 0.36 -1.12 16 2 C -0.11 -1.11 5.29 -26.73 -0.14 -1.25 16 3 C 0.08 0.74 2.73 -67.71 -0.18 0.56 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.08 0.80 4.47 -4.04 -0.02 0.78 16 6 N -0.72 -6.40 5.31 -60.29 -0.32 -6.72 16 7 C 0.50 5.31 7.90 -10.98 -0.09 5.23 16 8 O -0.52 -7.97 16.43 5.56 0.09 -7.88 16 9 C 0.08 0.66 6.27 -5.19 -0.03 0.62 16 10 N -0.44 -4.86 2.24 -115.27 -0.26 -5.12 16 11 C 0.19 2.43 12.56 -90.38 -1.13 1.30 16 12 N -0.49 -7.15 11.25 -14.66 -0.16 -7.32 16 13 C -0.03 -0.36 11.79 -17.81 -0.21 -0.57 16 14 C -0.02 -0.21 6.95 -81.60 -0.57 -0.77 16 15 C -0.07 -0.56 10.08 36.01 0.36 -0.20 16 16 N -0.65 -8.47 5.38 -107.98 -0.58 -9.05 16 17 C 0.04 0.69 5.32 -4.97 -0.03 0.66 16 18 C 0.44 9.68 7.82 -10.98 -0.09 9.59 16 19 O -0.58 -14.80 15.83 5.54 0.09 -14.71 16 20 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 34 H 0.08 0.91 6.69 -51.93 -0.35 0.56 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.71 7.23 -40.82 -0.30 2.41 16 37 H 0.12 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.13 0.76 8.13 -51.93 -0.42 0.34 16 39 H 0.21 2.05 8.06 -52.48 -0.42 1.63 16 40 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 44 H 0.34 4.35 7.24 -39.29 -0.28 4.07 16 45 H 0.09 1.36 6.30 -51.93 -0.33 1.03 16 46 H 0.05 0.68 6.41 -51.93 -0.33 0.35 16 47 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 400.38 15.07 6.03 6.03 Total: -1.00 -35.88 400.38 -8.69 -44.57 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -7.21 Total: 14.72 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.00 Total: 7.04 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.66 Total: -65.40 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.18 Total: -22.59 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.88 -8.69 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732210184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.883 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds