Wall clock time and date at job start Tue Mar 31 2020 20:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.46857 * 179.97438 * 9 7 6 11 11 C 1.35035 * 126.40314 * 265.02628 * 10 9 7 12 12 N 1.30500 * 108.70473 * 180.02562 * 11 10 9 13 13 C 1.34122 * 109.25254 * 0.02562 * 12 11 10 14 14 C 1.34670 * 108.02520 * 359.73032 * 13 12 11 15 15 C 1.50702 * 126.59541 * 180.28303 * 14 13 12 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47180 * 90.00047 * 25 23 21 27 27 H 1.48507 * 109.46968 * 209.99620 * 25 23 21 28 28 H 1.48494 * 109.47603 * 329.99747 * 25 23 21 29 29 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 30 30 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 31 31 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.08007 * 125.64769 * 0.03420 * 11 10 9 40 40 H 1.08006 * 125.98674 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46932 * 270.16611 * 15 14 13 42 42 H 1.08994 * 109.46800 * 30.16365 * 15 14 13 43 43 H 1.08992 * 109.46863 * 150.16299 * 15 14 13 44 44 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 45 45 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 46 46 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 47 47 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 7 7.3586 4.4764 0.0599 11 6 8.2112 4.4582 1.1070 12 7 9.4340 4.4659 0.6512 13 6 9.4061 4.4896 -0.6895 14 6 8.1171 4.4909 -1.0795 15 6 7.6076 4.5080 -2.4977 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 3.0625 1.0278 7.3408 25 14 1.5598 2.8433 8.7958 26 1 0.3506 2.1360 9.2885 27 1 2.6145 2.8073 9.8406 28 1 1.2165 4.2548 8.4875 29 1 -0.3633 0.5927 -0.8396 30 1 -0.3633 -1.0234 -0.0937 31 1 -0.3633 0.4307 0.9330 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 7.9279 4.4400 2.1491 40 1 10.2666 4.5013 -1.3420 41 1 7.4845 5.5397 -2.8271 42 1 8.3225 4.0022 -3.1466 43 1 6.6474 3.9945 -2.5449 44 1 1.7982 3.1043 1.1910 45 1 1.9988 0.4462 2.4506 46 1 3.3252 1.6286 2.3450 47 1 2.8316 1.0718 4.9357 48 1 3.3839 0.7444 8.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732210184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:59 Heat of formation + Delta-G solvation = -35.150585 kcal Electronic energy + Delta-G solvation = -29377.324683 eV Core-core repulsion = 25274.327977 eV Total energy + Delta-G solvation = -4102.996705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.13731 -41.04770 -40.16082 -38.64632 -35.96754 -35.17524 -35.02689 -33.34957 -33.00333 -32.86117 -30.33360 -28.75168 -27.67408 -27.33826 -26.04048 -24.30386 -22.48871 -22.09448 -21.66830 -20.89065 -20.48832 -19.86096 -18.75879 -18.29477 -18.22621 -17.05870 -16.84642 -16.76472 -16.37841 -16.10225 -15.84511 -15.76658 -15.32574 -15.09294 -14.85099 -14.75268 -14.58084 -14.42426 -14.02686 -13.95836 -13.76256 -13.61937 -13.48080 -13.32100 -13.23452 -13.10382 -12.88529 -12.65651 -12.41370 -12.30354 -12.12855 -11.81949 -11.56631 -11.50232 -11.48697 -10.97327 -10.51865 -10.34883 -10.27509 -10.01714 -9.36501 -9.25283 -8.46815 -5.95638 0.93102 1.36935 1.37568 1.41759 1.53999 1.62949 2.05180 2.12365 2.21027 2.28543 2.91821 3.20823 3.49577 3.53225 3.69220 3.72973 3.78491 3.84924 4.01978 4.07286 4.19170 4.24452 4.30221 4.37232 4.44013 4.50145 4.57370 4.67630 4.67749 4.72920 4.81501 4.93689 4.97797 5.01543 5.18518 5.24370 5.38093 5.38665 5.40716 5.57968 5.80370 5.86496 6.07046 6.11507 6.32772 6.42464 6.58809 7.00689 7.08625 7.12461 7.56386 8.10503 8.70486 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008670 B = 0.003089 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.781267 B = 9061.047613 C =11620.149973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.088 3.912 4 H 0.116 0.884 5 C 0.086 3.914 6 N -0.712 5.712 7 C 0.497 3.503 8 O -0.569 6.569 9 C 0.083 3.917 10 N -0.443 5.443 11 C 0.174 3.826 12 N -0.531 5.531 13 C -0.062 4.062 14 C -0.015 4.015 15 C -0.071 4.071 16 N -0.659 5.659 17 C 0.064 3.936 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.082 0.918 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.274 1.274 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.219 0.781 40 H 0.180 0.820 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.347 0.653 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 4.402 -21.515 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.022 4.022 4 H 0.134 0.866 5 C -0.039 4.039 6 N -0.365 5.365 7 C 0.283 3.717 8 O -0.448 6.448 9 C -0.043 4.043 10 N -0.126 5.126 11 C -0.108 4.108 12 N -0.249 5.249 13 C -0.208 4.208 14 C -0.129 4.129 15 C -0.129 4.129 16 N -0.291 5.291 17 C -0.068 4.068 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.459 4.459 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.199 1.199 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.235 0.765 40 H 0.197 0.803 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.167 0.833 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.226 0.774 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.096 3.890 -20.955 21.536 hybrid contribution 0.193 0.225 0.926 0.972 sum 3.289 4.115 -20.029 20.710 Atomic orbital electron populations 1.21565 0.94962 1.01117 1.01888 1.21541 0.96925 0.94273 1.02575 1.22037 0.89825 0.97395 0.92912 0.86586 1.22136 0.96536 0.82844 1.02420 1.45802 1.06618 1.10404 1.73707 1.21155 0.82704 0.91761 0.76119 1.90795 1.56583 1.47359 1.50025 1.21990 0.77699 0.94579 1.10021 1.45018 1.06680 1.54252 1.06666 1.25297 0.84592 1.05480 0.95435 1.70204 1.22317 1.20732 1.11675 1.22403 0.96511 1.10347 0.91509 1.21755 0.91761 1.08816 0.90609 1.20297 1.01645 1.03884 0.87088 1.60172 1.61112 1.07702 1.00151 1.21519 0.96799 0.99817 0.88665 1.20810 0.84809 0.86205 0.85322 1.90494 1.38039 1.34513 1.87257 1.41972 1.40276 1.33979 1.05054 1.19657 1.24301 1.17246 0.84743 0.90011 1.26031 0.96417 0.97115 1.01800 1.69679 1.31164 1.28654 1.26864 0.84954 0.77979 0.78539 0.77064 1.19795 1.19876 1.19389 0.91911 0.92762 0.94111 0.89439 0.92793 0.92894 0.90266 0.74873 0.82418 0.83181 0.76513 0.80270 0.88695 0.89152 0.91868 0.83253 0.88481 0.92549 0.77370 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.71 71.98 0.70 -1.93 16 2 C -0.11 -1.97 5.29 30.59 0.16 -1.81 16 3 C 0.09 1.45 2.73 44.91 0.12 1.57 16 4 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 5 C 0.09 1.51 4.47 86.38 0.39 1.90 16 6 N -0.71 -10.81 5.31 -463.05 -2.46 -13.27 16 7 C 0.50 9.70 7.90 87.66 0.69 10.39 16 8 O -0.57 -17.15 16.43 -3.04 -0.05 -17.20 16 9 C 0.08 1.09 6.27 85.63 0.54 1.62 16 10 N -0.44 -9.18 2.24 -518.61 -1.16 -10.35 16 11 C 0.17 4.39 12.56 180.26 2.26 6.65 16 12 N -0.53 -15.84 11.25 -200.31 -2.25 -18.09 16 13 C -0.06 -1.54 11.79 83.52 0.98 -0.56 16 14 C -0.01 -0.31 6.95 40.95 0.28 -0.03 16 15 C -0.07 -0.90 10.08 71.24 0.72 -0.18 16 16 N -0.66 -15.94 5.38 -495.54 -2.66 -18.60 16 17 C 0.06 1.98 5.32 85.56 0.46 2.43 16 18 C 0.44 19.50 7.82 87.66 0.69 20.19 16 19 O -0.62 -31.41 15.83 -3.08 -0.05 -31.46 16 20 N -0.58 -28.57 5.29 -306.97 -1.62 -30.19 16 21 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 25 Si 0.99 42.30 29.55 68.60 2.03 44.32 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 1.03 7.85 -2.39 -0.02 1.01 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.08 6.36 -2.39 -0.02 1.07 16 34 H 0.05 1.21 6.69 -2.38 -0.02 1.19 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.41 4.27 7.23 -92.71 -0.67 3.60 16 37 H 0.16 0.88 8.03 -2.39 -0.02 0.86 16 38 H 0.15 1.36 8.13 -2.39 -0.02 1.34 16 39 H 0.22 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.78 7.95 -2.39 -0.02 0.76 16 44 H 0.35 8.03 7.24 -89.69 -0.65 7.38 16 45 H 0.10 2.89 6.30 -2.39 -0.02 2.87 16 46 H 0.06 1.64 6.41 -2.39 -0.02 1.62 16 47 H 0.39 19.00 7.90 -92.71 -0.73 18.27 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -80.23 400.38 0.28 -79.95 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -1.04 Total: 41.68 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 9.27 Total: 22.61 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -9.88 Total: -139.91 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.10 Total: -48.66 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -80.23 0.28 -79.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732210184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.801 kcal (2) G-P(sol) polarization free energy of solvation -80.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds