Wall clock time and date at job start Tue Mar 31 2020 20:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 N 1.46497 * 109.47173 * 179.97438 * 3 2 1 5 5 C 1.34815 * 126.59406 * 125.24640 * 4 3 2 6 6 C 1.36596 * 106.83820 * 180.13082 * 5 4 3 7 7 C 1.47523 * 125.76994 * 179.89963 * 6 5 4 8 8 O 1.21594 * 120.00280 * 6.76413 * 7 6 5 9 9 N 1.34779 * 119.99881 * 186.77461 * 7 6 5 10 10 C 1.47154 * 120.98313 * 356.40325 * 9 7 6 11 11 C 1.53300 * 108.37945 * 129.44779 * 10 9 7 12 12 O 1.42960 * 109.22368 * 52.30499 * 11 10 9 13 13 C 1.42956 * 114.16709 * 297.41947 * 12 11 10 14 14 H 1.09004 * 109.55286 * 302.63048 * 13 12 11 15 15 C 1.53007 * 109.51170 * 182.50617 * 13 12 11 16 16 H 1.08999 * 109.46945 * 185.25312 * 15 13 12 17 17 C 1.53002 * 109.46755 * 305.24989 * 15 13 12 18 18 N 1.46495 * 109.46991 * 65.25209 * 15 13 12 19 19 C 1.36942 * 119.99671 * 154.72658 * 18 15 13 20 20 H 1.07996 * 120.00239 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99615 * 179.97438 * 19 18 15 22 22 N 1.31620 * 120.00204 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99641 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46699 * 90.00436 * 23 21 19 25 25 H 1.48502 * 109.47267 * 210.00200 * 23 21 19 26 26 H 1.48500 * 109.47374 * 330.00776 * 23 21 19 27 27 C 1.47151 * 120.98135 * 176.38922 * 9 7 6 28 28 N 1.34401 * 108.46093 * 359.62947 * 6 5 4 29 29 N 1.28767 * 109.52236 * 0.22916 * 28 6 5 30 30 H 1.09006 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47430 * 300.00372 * 1 2 3 32 32 H 1.09001 * 109.46704 * 60.00738 * 1 2 3 33 33 H 1.08999 * 109.47561 * 239.99291 * 2 1 3 34 34 H 1.09005 * 109.46909 * 119.99735 * 2 1 3 35 35 H 1.09004 * 109.46973 * 59.99243 * 3 2 1 36 36 H 1.08999 * 109.46712 * 300.00053 * 3 2 1 37 37 H 1.07995 * 126.58046 * 359.97438 * 5 4 3 38 38 H 1.09001 * 109.68483 * 249.17448 * 10 9 7 39 39 H 1.08997 * 109.67850 * 9.72911 * 10 9 7 40 40 H 1.09004 * 109.50506 * 172.22979 * 11 10 9 41 41 H 1.08993 * 109.51214 * 292.32773 * 11 10 9 42 42 H 1.08999 * 109.47130 * 60.00436 * 17 15 13 43 43 H 1.08997 * 109.46658 * 180.02562 * 17 15 13 44 44 H 1.09002 * 109.46916 * 299.99883 * 17 15 13 45 45 H 0.97001 * 120.00274 * 334.99679 * 18 15 13 46 46 H 0.96996 * 119.99593 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.68538 * 110.82941 * 27 9 7 48 48 H 1.08995 * 109.68246 * 350.28034 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0670 -0.8831 6 6 5.5944 1.7981 -0.5072 7 6 6.8109 2.2773 -1.1905 8 8 6.7209 3.0745 -2.1043 9 7 8.0220 1.8313 -0.8021 10 6 8.1625 0.9276 0.3507 11 6 9.0167 -0.2715 -0.0764 12 8 10.2311 0.2011 -0.6643 13 6 10.0443 0.9707 -1.8545 14 1 9.4996 0.3787 -2.5900 15 6 11.4072 1.3673 -2.4257 16 1 11.2645 2.0309 -3.2786 17 6 12.2211 2.0883 -1.3492 18 7 12.1246 0.1650 -2.8570 19 6 13.0818 0.2518 -3.8323 20 1 13.3083 1.2066 -4.2833 21 6 13.7619 -0.8874 -4.2406 22 7 13.4863 -2.0510 -3.6906 23 14 15.0673 -0.7691 -5.5716 24 1 16.3885 -0.5058 -4.9470 25 1 15.1222 -2.0471 -6.3260 26 1 14.7288 0.3395 -6.4998 27 6 9.2428 2.2334 -1.5186 28 7 5.5636 1.0282 0.5940 29 7 4.3404 0.7974 0.9236 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6765 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9968 2.6631 -1.7278 38 1 8.6511 1.4527 1.1714 39 1 7.1787 0.5828 0.6688 40 1 9.2482 -0.8827 0.7960 41 1 8.4675 -0.8690 -0.8041 42 1 12.3638 1.4248 -0.4963 43 1 13.1918 2.3712 -1.7563 44 1 11.6872 2.9829 -1.0284 45 1 11.9187 -0.6932 -2.4544 46 1 13.9613 -2.8470 -3.9762 47 1 9.8403 2.8900 -0.8861 48 1 8.9744 2.7534 -2.4381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734179164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:35 Heat of formation + Delta-G solvation = 46.056463 kcal Electronic energy + Delta-G solvation = -29496.860459 eV Core-core repulsion = 25397.385156 eV Total energy + Delta-G solvation = -4099.475303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61721 -40.06791 -38.24134 -36.54674 -35.42728 -34.47080 -33.12599 -32.43120 -31.28262 -30.12229 -28.37485 -27.84708 -27.00122 -24.80857 -23.85246 -23.39576 -23.08054 -22.11759 -21.62944 -19.81308 -19.48106 -17.89719 -17.16263 -16.73242 -16.63208 -16.38490 -15.80035 -15.59452 -15.31536 -15.08372 -14.87463 -14.44163 -14.32096 -14.12982 -13.98243 -13.34236 -13.29104 -13.12725 -12.90038 -12.71544 -12.66561 -12.42270 -12.29096 -12.06828 -11.95818 -11.50212 -11.28804 -11.03115 -10.96911 -10.77344 -10.70913 -10.66369 -10.40883 -10.26029 -10.05533 -9.75017 -9.67244 -9.61644 -9.55896 -8.83506 -8.36993 -6.86754 -5.67621 -2.96062 0.78486 1.41169 1.59873 2.82183 3.12587 3.49065 3.53902 3.55613 3.73833 3.82770 4.08032 4.16468 4.28024 4.42066 4.55248 4.61699 4.64202 4.69661 4.88428 4.94761 5.02061 5.08528 5.27485 5.33769 5.34266 5.39278 5.43010 5.46570 5.54689 5.64657 5.79161 5.85658 5.94251 5.95152 6.05776 6.11402 6.15156 6.30770 6.52493 6.55190 6.73792 6.90300 7.24059 7.29080 7.58508 7.63556 7.77384 8.03444 8.50667 9.62333 10.20955 10.57658 11.54873 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002184 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.858717 B =12817.686939 C =13082.347843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.358 5.358 5 C 0.094 3.906 6 C -0.093 4.093 7 C 0.602 3.398 8 O -0.541 6.541 9 N -0.594 5.594 10 C 0.039 3.961 11 C 0.048 3.952 12 O -0.360 6.360 13 C 0.077 3.923 14 H 0.062 0.938 15 C 0.185 3.815 16 H 0.059 0.941 17 C -0.162 4.162 18 N -0.719 5.719 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.083 3.917 28 N -0.206 5.206 29 N -0.063 5.063 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.206 0.794 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.102 0.898 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.389 0.611 46 H 0.254 0.746 47 H 0.083 0.917 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.135 7.790 10.411 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.143 5.143 5 C -0.063 4.063 6 C -0.232 4.232 7 C 0.388 3.612 8 O -0.418 6.418 9 N -0.326 5.326 10 C -0.084 4.084 11 C -0.030 4.030 12 O -0.278 6.278 13 C 0.017 3.983 14 H 0.080 0.920 15 C 0.074 3.926 16 H 0.077 0.923 17 C -0.222 4.222 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.040 4.040 28 N -0.079 5.079 29 N -0.042 5.042 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.222 0.778 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.223 0.777 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.890 7.341 11.105 30.904 hybrid contribution 0.303 0.335 -1.454 1.523 sum -27.586 7.676 9.651 30.217 Atomic orbital electron populations 1.21704 0.93748 1.03001 1.02348 1.21843 0.97056 0.94424 1.04389 1.22205 0.72325 1.00269 1.05274 1.50546 1.08879 1.34893 1.20012 1.23380 0.89951 0.96888 0.96032 1.21463 0.94593 1.07975 0.99138 1.16797 0.81481 0.80729 0.82177 1.90803 1.86098 1.34551 1.30363 1.47945 1.05779 1.47463 1.31391 1.23482 1.05654 0.91637 0.87665 1.22902 0.86727 0.94711 0.98631 1.88082 1.28368 1.70441 1.40920 1.22947 0.98030 0.90444 0.86859 0.91966 1.20198 0.87680 0.90524 0.94189 0.92316 1.22408 1.00482 0.98763 1.00549 1.42357 1.43693 1.04892 1.45110 1.19259 1.11831 0.93916 1.11831 0.91163 1.24742 1.00440 0.95526 1.00358 1.69684 1.44698 0.98198 1.45352 0.86204 0.81909 0.76644 0.81519 1.21799 1.21895 1.20804 1.22558 0.84458 0.98286 0.98682 1.74185 1.12053 1.10821 1.10815 1.81995 0.93591 1.17109 1.11546 0.91533 0.92067 0.92190 0.90903 0.89937 0.88221 0.87573 0.77759 0.90801 0.84047 0.87969 0.93213 0.92393 0.92962 0.94648 0.77658 0.93623 0.89905 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.32 9.91 37.16 0.37 0.05 16 2 C -0.14 -0.51 6.14 -26.73 -0.16 -0.68 16 3 C 0.12 0.41 6.54 -4.04 -0.03 0.38 16 4 N -0.36 -2.71 3.69 -61.06 -0.23 -2.93 16 5 C 0.09 0.80 11.28 -16.83 -0.19 0.61 16 6 C -0.09 -1.11 6.77 -83.55 -0.57 -1.68 16 7 C 0.60 8.77 7.70 -12.47 -0.10 8.68 16 8 O -0.54 -8.97 16.36 5.28 0.09 -8.88 16 9 N -0.59 -8.71 3.02 -173.51 -0.52 -9.23 16 10 C 0.04 0.52 6.47 -3.53 -0.02 0.49 16 11 C 0.05 0.70 6.98 37.31 0.26 0.96 16 12 O -0.36 -6.58 9.24 -35.23 -0.33 -6.91 16 13 C 0.08 1.39 2.61 -26.58 -0.07 1.32 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.18 3.83 2.77 -67.93 -0.19 3.65 16 16 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 17 C -0.16 -3.10 9.06 37.16 0.34 -2.76 16 18 N -0.72 -18.73 5.10 -53.42 -0.27 -19.00 16 19 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 23 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.08 1.29 5.81 -3.54 -0.02 1.27 16 28 N -0.21 -2.49 8.67 32.85 0.28 -2.20 16 29 N -0.06 -0.67 13.65 60.35 0.82 0.15 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.11 0.09 8.08 -51.93 -0.42 -0.33 16 37 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.14 1.78 3.80 -113.20 -0.43 1.35 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 45 H 0.39 10.97 7.59 -40.82 -0.31 10.66 16 46 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.08 1.23 6.27 -51.93 -0.33 0.91 16 48 H 0.10 1.58 7.11 -51.93 -0.37 1.21 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -35.25 389.80 -6.82 -42.07 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.62 Total: 6.50 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.62 Total: 4.87 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.81 Total: -61.37 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.24 Total: -15.79 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.25 -6.82 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734179164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.122 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds