Wall clock time and date at job start Tue Mar 31 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46919 * 2 1 4 4 N 1.46500 * 109.47006 * 119.99411 * 2 1 3 5 5 C 1.46499 * 120.00207 * 294.68570 * 4 2 1 6 6 C 1.52997 * 109.47217 * 263.42895 * 5 4 2 7 7 N 1.46895 * 109.47142 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00365 * 66.04734 * 7 6 5 9 9 C 1.46906 * 111.00058 * 190.00208 * 7 6 5 10 10 C 1.50699 * 109.47695 * 169.99814 * 9 7 6 11 11 O 1.21298 * 119.99386 * 359.97438 * 10 9 7 12 12 N 1.34766 * 120.00274 * 179.97438 * 10 9 7 13 13 C 1.37105 * 119.99960 * 180.02562 * 12 10 9 14 14 H 1.07996 * 119.99868 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99667 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00581 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99670 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47013 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46992 * 119.99653 * 17 15 13 20 20 H 1.48492 * 109.46935 * 240.00063 * 17 15 13 21 21 C 1.34777 * 120.00017 * 114.68471 * 4 2 1 22 22 O 1.21578 * 120.00018 * 4.11576 * 21 4 2 23 23 C 1.47702 * 120.00421 * 184.12043 * 21 4 2 24 24 C 1.41509 * 126.52241 * 173.92104 * 23 21 4 25 25 C 1.35369 * 105.50205 * 180.02562 * 24 23 21 26 26 N 1.35030 * 107.22837 * 359.97438 * 25 24 23 27 27 H 0.97001 * 124.87960 * 180.02562 * 26 25 24 28 28 N 1.28460 * 110.23648 * 0.02562 * 26 25 24 29 29 H 1.08999 * 109.47278 * 300.00099 * 1 2 3 30 30 H 1.08994 * 109.47090 * 60.00732 * 1 2 3 31 31 H 1.09011 * 109.46681 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47389 * 239.99360 * 2 1 3 33 33 H 1.09003 * 109.46881 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46832 * 299.99555 * 3 2 1 35 35 H 1.08999 * 109.47226 * 59.99869 * 3 2 1 36 36 H 1.09000 * 109.47321 * 23.42954 * 5 4 2 37 37 H 1.09004 * 109.47002 * 143.43159 * 5 4 2 38 38 H 1.09000 * 109.47024 * 300.00242 * 6 5 4 39 39 H 1.08996 * 109.46834 * 59.99596 * 6 5 4 40 40 H 1.09000 * 109.47112 * 59.99717 * 8 7 6 41 41 H 1.08996 * 109.47172 * 179.97438 * 8 7 6 42 42 H 1.08999 * 109.46998 * 300.00136 * 8 7 6 43 43 H 1.09003 * 109.46807 * 290.00195 * 9 7 6 44 44 H 1.08999 * 109.46977 * 49.99348 * 9 7 6 45 45 H 0.97001 * 120.00546 * 359.97438 * 12 10 9 46 46 H 0.96993 * 120.00432 * 180.02562 * 16 15 13 47 47 H 1.07999 * 127.24243 * 0.02966 * 24 23 21 48 48 H 1.08000 * 126.38068 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7630 -0.1257 2.5236 6 6 2.9818 0.6797 2.9783 7 7 2.7259 1.2455 4.3096 8 6 2.6114 0.1848 5.3194 9 6 3.7670 2.2139 4.6790 10 6 3.3491 2.9497 5.9260 11 8 2.2881 2.6929 6.4547 12 7 4.1542 3.8928 6.4537 13 6 3.7742 4.5618 7.5885 14 1 2.8295 4.3333 8.0593 15 6 4.6041 5.5346 8.1322 16 7 5.7534 5.8131 7.5591 17 14 4.0860 6.4466 9.6780 18 1 2.7588 5.9515 10.1234 19 1 5.0872 6.2130 10.7496 20 1 4.0000 7.9007 9.3893 21 6 2.7026 -1.8454 1.0756 22 8 2.9795 -2.2755 -0.0273 23 6 3.1159 -2.5886 2.2833 24 6 3.7280 -3.8640 2.3189 25 6 3.9203 -4.1364 3.6308 26 7 3.4495 -3.0825 4.3314 27 1 3.4609 -3.0096 5.2986 28 7 2.9845 -2.1901 3.5329 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 0.8918 0.5278 2.4790 37 1 1.5759 -0.9327 3.2320 38 1 3.8530 0.0261 3.0230 39 1 3.1689 1.4866 2.2699 40 1 3.5398 -0.3853 5.3545 41 1 2.4226 0.6313 6.2956 42 1 1.7874 -0.4788 5.0574 43 1 4.7034 1.6876 4.8642 44 1 3.9054 2.9264 3.8659 45 1 5.0029 4.0979 6.0311 46 1 6.3329 6.4919 7.9389 47 1 3.9872 -4.4883 1.4766 48 1 4.3678 -5.0299 4.0407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734549715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:39 Heat of formation + Delta-G solvation = 29.422594 kcal Electronic energy + Delta-G solvation = -30205.963617 eV Core-core repulsion = 26105.767015 eV Total energy + Delta-G solvation = -4100.196602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.88185 -39.98871 -38.56536 -37.05784 -35.86966 -33.86243 -33.06081 -31.63523 -31.23046 -30.73220 -29.25588 -27.67625 -27.23363 -25.34504 -24.62038 -23.90026 -22.05015 -21.16866 -20.95636 -19.27244 -19.10003 -18.43100 -17.81030 -17.23315 -16.45122 -16.15012 -15.84784 -15.10792 -14.94351 -14.72099 -14.54357 -14.34563 -14.10207 -13.91921 -13.82865 -13.48243 -13.38996 -13.21471 -13.15422 -12.76649 -12.37024 -12.25762 -12.03090 -12.00708 -11.51244 -11.37673 -11.33105 -11.28728 -11.00599 -10.92394 -10.84123 -10.54370 -10.34557 -10.22418 -10.11635 -9.62096 -9.47880 -9.42892 -8.82436 -8.36825 -7.96329 -7.78893 -6.41316 -3.82064 1.40063 1.91215 2.55537 2.92012 3.15848 3.25872 3.26455 3.33413 3.92287 4.00949 4.18744 4.39893 4.59251 4.70039 4.93624 4.95179 5.02455 5.12398 5.16731 5.24763 5.30791 5.38722 5.46399 5.47160 5.50544 5.61955 5.72512 5.73668 5.76082 5.80434 5.90321 5.94915 6.03745 6.07630 6.09111 6.14308 6.25132 6.31362 6.50613 6.60367 6.76361 7.24183 7.35266 7.47164 7.55671 7.62609 8.06785 8.07598 8.62869 9.18947 9.55808 10.07778 10.76595 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.002700 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.376938 B =10368.439961 C =11525.868594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.164 4.164 4 N -0.592 5.592 5 C 0.106 3.894 6 C 0.047 3.953 7 N -0.512 5.512 8 C 0.032 3.968 9 C 0.048 3.952 10 C 0.446 3.554 11 O -0.577 6.577 12 N -0.566 5.566 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.604 3.396 22 O -0.540 6.540 23 C -0.017 4.017 24 C -0.181 4.181 25 C -0.015 4.015 26 N -0.384 5.384 27 H 0.447 0.553 28 N -0.242 5.242 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.009 0.991 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.161 0.839 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -17.557 -11.835 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.222 4.222 4 N -0.325 5.325 5 C -0.017 4.017 6 C -0.083 4.083 7 N -0.236 5.236 8 C -0.116 4.116 9 C -0.084 4.084 10 C 0.231 3.769 11 O -0.461 6.461 12 N -0.203 5.203 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.390 3.610 22 O -0.415 6.415 23 C -0.177 4.177 24 C -0.209 4.209 25 C -0.159 4.159 26 N -0.097 5.097 27 H 0.292 0.708 28 N -0.079 5.079 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.178 0.822 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.015 -16.684 -11.445 20.845 hybrid contribution 1.642 -0.369 0.695 1.820 sum -3.373 -17.053 -10.750 20.439 Atomic orbital electron populations 1.22162 0.94806 1.02332 1.02675 1.21118 0.94186 0.93376 0.88414 1.22234 1.01743 0.95299 1.02957 1.47905 1.54327 1.22246 1.07996 1.21867 0.98159 0.99194 0.82490 1.22494 0.96818 0.97616 0.91353 1.61497 1.45507 1.15389 1.01241 1.22502 0.98730 0.92903 0.97478 1.21843 0.92719 0.95555 0.98282 1.19743 0.86357 0.83898 0.86872 1.90480 1.24084 1.67888 1.63633 1.41882 1.19563 1.33511 1.25322 1.19742 1.05239 1.15639 1.02061 0.87877 1.25254 0.95414 0.97737 0.99596 1.69618 1.10516 1.33411 1.40850 0.85817 0.78748 0.78988 0.80890 1.19226 1.20829 1.20761 1.17005 0.77311 0.80069 0.86571 1.90765 1.56173 1.68531 1.26078 1.21949 1.07596 0.96880 0.91282 1.21760 1.05394 0.96956 0.96807 1.22948 1.05171 0.95386 0.92385 1.43605 1.43279 1.12520 1.10341 0.70848 1.73919 1.16996 1.15972 1.01020 0.91870 0.91340 0.92416 0.88198 0.92191 0.91356 0.91346 0.89602 0.87662 0.94944 0.91092 0.97297 0.89327 0.91900 0.93825 0.89623 0.77546 0.91962 0.82175 0.79949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.26 37.16 0.34 -1.10 16 2 C 0.13 1.38 3.23 -67.93 -0.22 1.16 16 3 C -0.16 -1.59 8.07 37.16 0.30 -1.29 16 4 N -0.59 -7.12 2.39 -167.26 -0.40 -7.52 16 5 C 0.11 1.30 4.04 -4.04 -0.02 1.28 16 6 C 0.05 0.64 4.61 -3.83 -0.02 0.62 16 7 N -0.51 -8.44 4.50 -244.38 -1.10 -9.54 16 8 C 0.03 0.50 7.99 60.07 0.48 0.98 16 9 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 10 C 0.45 10.42 7.47 -10.99 -0.08 10.34 16 11 O -0.58 -15.23 13.91 5.54 0.08 -15.15 16 12 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 14 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 17 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.60 8.25 7.62 -12.39 -0.09 8.15 16 22 O -0.54 -8.58 16.27 5.30 0.09 -8.50 16 23 C -0.02 -0.20 6.65 -82.76 -0.55 -0.75 16 24 C -0.18 -1.79 10.81 -39.36 -0.43 -2.21 16 25 C -0.01 -0.10 12.02 -17.17 -0.21 -0.31 16 26 N -0.38 -3.05 6.83 30.47 0.21 -2.84 16 27 H 0.45 2.35 8.96 -190.44 -1.71 0.64 16 28 N -0.24 -2.67 5.87 33.42 0.20 -2.47 16 29 H 0.06 0.57 6.93 -51.93 -0.36 0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.10 1.14 6.91 -51.93 -0.36 0.78 16 33 H 0.06 0.62 7.98 -51.93 -0.41 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.71 6.66 -51.93 -0.35 0.36 16 36 H 0.09 1.05 6.50 -51.93 -0.34 0.71 16 37 H 0.11 1.33 3.85 -51.93 -0.20 1.13 16 38 H 0.03 0.47 7.04 -51.93 -0.37 0.10 16 39 H 0.07 0.95 5.97 -51.93 -0.31 0.64 16 40 H 0.01 0.12 7.82 -51.93 -0.41 -0.28 16 41 H 0.09 1.69 5.82 -51.93 -0.30 1.39 16 42 H 0.06 0.87 6.15 -51.93 -0.32 0.55 16 43 H 0.04 0.75 8.12 -51.93 -0.42 0.32 16 44 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 48 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -33.86 381.94 -8.50 -42.36 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.21 Total: 10.32 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.76 Total: 9.81 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.43 Total: -60.50 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.16 Total: -23.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.86 -8.50 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734549715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.779 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds