Wall clock time and date at job start Tue Mar 31 2020 19:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.35359 * 126.38969 * 84.99785 * 4 3 2 6 6 C 1.41502 * 105.50538 * 180.02562 * 5 4 3 7 7 C 1.47705 * 126.51563 * 180.02562 * 6 5 4 8 8 O 1.21563 * 120.00345 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99642 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00273 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47658 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47103 * 64.99700 * 11 10 9 13 13 C 1.52997 * 109.47482 * 184.99947 * 11 10 9 14 14 N 1.46902 * 109.47181 * 305.00169 * 11 10 9 15 15 C 1.46895 * 111.00561 * 154.99678 * 14 11 10 16 16 C 1.50699 * 109.47505 * 180.02562 * 15 14 11 17 17 O 1.21295 * 119.99607 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00043 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99820 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00168 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99647 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00321 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99765 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47110 * 119.99461 * 23 21 19 26 26 H 1.48498 * 109.46966 * 239.99913 * 23 21 19 27 27 N 1.31812 * 106.96101 * 0.26215 * 6 5 4 28 28 N 1.28468 * 110.07497 * 359.55920 * 27 6 5 29 29 H 0.96996 * 124.88667 * 180.20372 * 28 27 6 30 30 H 1.08997 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47129 * 300.00699 * 1 2 3 32 32 H 1.09000 * 109.46502 * 60.00319 * 1 2 3 33 33 H 1.08996 * 109.47129 * 239.99301 * 2 1 3 34 34 H 1.09000 * 109.46502 * 119.99681 * 2 1 3 35 35 H 1.09000 * 109.46984 * 59.99492 * 3 2 1 36 36 H 1.08994 * 109.46632 * 299.99729 * 3 2 1 37 37 H 1.08002 * 127.24513 * 0.02562 * 5 4 3 38 38 H 0.97002 * 119.99790 * 0.02562 * 9 7 6 39 39 H 1.09001 * 109.46952 * 59.99319 * 10 9 7 40 40 H 1.09004 * 109.46722 * 300.00399 * 10 9 7 41 41 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 42 42 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 43 43 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 44 44 H 1.00906 * 110.99706 * 278.95562 * 14 11 10 45 45 H 1.09004 * 109.46925 * 300.00216 * 15 14 11 46 46 H 1.09001 * 109.46797 * 59.99650 * 15 14 11 47 47 H 0.97001 * 120.00239 * 359.97438 * 18 16 15 48 48 H 0.96999 * 119.99987 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3506 1.3473 -1.0845 6 6 5.6725 1.3907 -0.5814 7 6 6.9171 1.3214 -1.3736 8 8 6.8626 1.2167 -2.5835 9 7 8.1135 1.3754 -0.7552 10 6 9.3481 1.3073 -1.5409 11 6 10.5544 1.3884 -0.6034 12 1 10.5737 0.5093 0.0408 13 6 11.8404 1.4429 -1.4305 14 7 10.4520 2.5987 0.2228 15 6 11.1933 2.4414 1.4812 16 6 11.0650 3.6997 2.3006 17 8 10.4198 4.6356 1.8775 18 7 11.6679 3.7854 3.5029 19 6 11.5515 4.9303 4.2480 20 1 10.9771 5.7637 3.8714 21 6 12.1728 5.0184 5.4878 22 7 12.8714 4.0043 5.9463 23 14 12.0148 6.5787 6.5028 24 1 11.1824 7.5649 5.7682 25 1 11.3733 6.2602 7.8036 26 1 13.3636 7.1515 6.7431 27 7 5.5817 1.4995 0.7291 28 7 4.3476 1.5368 1.0841 29 1 4.0357 1.6172 1.9990 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 4.0467 1.2572 -2.1170 38 1 8.1570 1.4594 0.2102 39 1 9.3774 2.1394 -2.2443 40 1 9.3777 0.3662 -2.0900 41 1 11.8211 2.3219 -2.0747 42 1 11.9163 0.5448 -2.0436 43 1 12.6998 1.5011 -0.7626 44 1 10.7694 3.4110 -0.2848 45 1 10.7844 1.6004 2.0411 46 1 12.2449 2.2554 1.2626 47 1 12.1842 3.0370 3.8410 48 1 13.3047 4.0657 6.8120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752896072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:58 Heat of formation + Delta-G solvation = -45.194547 kcal Electronic energy + Delta-G solvation = -28205.710625 eV Core-core repulsion = 24102.278381 eV Total energy + Delta-G solvation = -4103.432244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.69335 -40.54765 -40.09280 -38.11276 -36.23614 -35.97023 -35.02381 -33.28562 -32.96164 -32.00949 -31.64374 -27.96280 -27.78362 -27.25286 -25.72231 -24.44113 -22.84927 -22.00172 -21.90422 -21.11544 -20.81909 -19.91466 -18.69620 -18.13091 -17.60677 -17.15629 -16.89231 -16.61202 -16.45647 -16.25164 -15.92130 -15.78393 -15.36620 -15.26017 -14.90649 -14.70165 -14.50265 -14.35867 -13.95104 -13.72672 -13.65759 -13.43445 -13.35170 -13.07782 -13.04600 -12.78661 -12.53231 -12.44703 -12.39423 -12.12563 -12.12265 -11.91236 -11.85108 -11.53086 -11.50975 -11.25955 -10.48937 -10.33578 -10.00460 -9.97364 -9.94313 -9.32278 -8.46671 -5.94851 0.53122 1.11162 1.35810 1.41016 1.54987 1.89468 2.07140 2.27645 2.30681 2.40056 2.91041 3.20909 3.41999 3.54801 3.65788 3.85570 3.97828 4.10971 4.17775 4.27892 4.32742 4.36095 4.47367 4.49234 4.55557 4.61967 4.67427 4.70118 4.79438 4.85363 4.90798 4.95313 4.99575 5.00849 5.24115 5.27055 5.32596 5.36776 5.41359 5.47393 5.48281 5.89843 6.09546 6.11559 6.38434 6.51194 6.61132 6.88946 7.13702 7.19485 7.57855 8.13700 8.70871 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.002337 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.626183 B =11976.225316 C =14395.920045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.047 4.047 4 C 0.035 3.965 5 C -0.198 4.198 6 C -0.037 4.037 7 C 0.596 3.404 8 O -0.575 6.575 9 N -0.694 5.694 10 C 0.133 3.867 11 C 0.076 3.924 12 H 0.099 0.901 13 C -0.175 4.175 14 N -0.676 5.676 15 C 0.067 3.933 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 N -0.273 5.273 28 N -0.367 5.367 29 H 0.458 0.542 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.345 0.655 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 -12.210 -10.656 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.091 4.091 5 C -0.226 4.226 6 C -0.196 4.196 7 C 0.381 3.619 8 O -0.454 6.454 9 N -0.344 5.344 10 C 0.009 3.991 11 C -0.034 4.034 12 H 0.117 0.883 13 C -0.234 4.234 14 N -0.309 5.309 15 C -0.065 4.065 16 C 0.226 3.774 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 N -0.110 5.110 28 N -0.083 5.083 29 H 0.306 0.694 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.182 0.818 38 H 0.250 0.750 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.165 0.835 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.676 -11.791 -10.406 23.659 hybrid contribution 0.861 0.620 0.674 1.257 sum -16.815 -11.170 -9.732 22.411 Atomic orbital electron populations 1.21763 0.94205 1.02268 1.02607 1.21509 0.96791 0.94972 1.02374 1.20381 0.83534 0.98943 1.05716 1.21864 0.96399 1.04642 0.86227 1.21671 0.90010 1.10150 1.00772 1.21940 0.95551 1.11712 0.90445 1.17147 0.82628 0.76093 0.86050 1.90725 1.87536 1.52839 1.14339 1.45733 1.04767 1.71808 1.12104 1.21484 0.82074 1.02120 0.93412 1.21870 0.93684 0.93493 0.94317 0.88335 1.22373 0.96627 1.03675 1.00710 1.60120 1.60018 1.05462 1.05266 1.21558 0.98305 0.95193 0.91465 1.20932 0.82747 0.90652 0.83076 1.90508 1.45902 1.42107 1.72456 1.41927 1.46491 1.16277 1.16429 1.19670 1.31551 0.94839 1.00042 0.90537 1.26011 0.95715 1.01740 0.97850 1.69670 1.33505 1.32032 1.20865 0.84898 0.78272 0.77506 0.77821 1.19976 1.19566 1.19616 1.73582 1.03139 1.19378 1.14889 1.43447 1.02196 1.51724 1.10980 0.69414 0.92410 0.91898 0.91990 0.92069 0.92153 0.88429 0.87928 0.81764 0.74959 0.92378 0.89734 0.92221 0.89746 0.91882 0.83537 0.87638 0.91248 0.76964 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 71.98 0.71 -0.28 16 2 C -0.12 -1.05 5.92 30.60 0.18 -0.87 16 3 C -0.05 -0.43 5.77 29.85 0.17 -0.26 16 4 C 0.04 0.61 6.48 41.40 0.27 0.88 16 5 C -0.20 -4.67 10.73 22.41 0.24 -4.43 16 6 C -0.04 -1.07 7.13 42.45 0.30 -0.76 16 7 C 0.60 19.03 7.82 86.74 0.68 19.70 16 8 O -0.58 -20.88 16.93 -3.91 -0.07 -20.95 16 9 N -0.69 -19.82 5.39 -466.12 -2.51 -22.33 16 10 C 0.13 3.22 5.37 86.38 0.46 3.68 16 11 C 0.08 1.66 2.75 44.91 0.12 1.78 16 12 H 0.10 1.91 7.80 -2.39 -0.02 1.89 16 13 C -0.17 -3.09 9.16 71.98 0.66 -2.43 16 14 N -0.68 -20.22 5.31 -495.60 -2.63 -22.85 16 15 C 0.07 2.17 5.96 85.56 0.51 2.68 16 16 C 0.44 20.54 7.82 87.66 0.69 21.22 16 17 O -0.62 -34.53 15.78 -3.08 -0.05 -34.58 16 18 N -0.57 -29.15 5.29 -306.98 -1.62 -30.78 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 23 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 N -0.27 -7.37 11.92 -48.18 -0.57 -7.95 16 28 N -0.37 -6.94 6.83 -47.93 -0.33 -7.26 16 29 H 0.46 5.42 8.96 -220.00 -1.97 3.44 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.41 12.22 7.86 -92.71 -0.73 11.49 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.14 7.45 -2.38 -0.02 1.12 16 44 H 0.35 11.27 8.17 -89.69 -0.73 10.54 16 45 H 0.11 3.05 8.06 -2.39 -0.02 3.03 16 46 H 0.07 1.95 7.44 -2.39 -0.02 1.93 16 47 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -76.06 408.09 -2.34 -78.40 By element: Atomic # 1 Polarization: 52.86 SS G_CDS: -3.15 Total: 49.71 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.28 Total: 22.64 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -7.39 Total: -140.24 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -0.11 Total: -55.53 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -76.06 -2.34 -78.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752896072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.201 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds