Wall clock time and date at job start Tue Mar 31 2020 20:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47469 * 2 1 4 4 H 1.09005 * 109.47504 * 55.37194 * 3 2 1 5 5 C 1.53003 * 109.47493 * 175.37850 * 3 2 1 6 6 N 1.46500 * 109.47050 * 174.99948 * 5 3 2 7 7 C 1.34780 * 119.99516 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00232 * 0.02562 * 7 6 5 9 9 C 1.47432 * 119.99738 * 180.02562 * 7 6 5 10 10 C 1.38046 * 126.41457 * 359.68873 * 9 7 6 11 11 N 1.34256 * 107.41738 * 179.87272 * 10 9 7 12 12 C 1.46500 * 125.75725 * 180.10529 * 11 10 9 13 13 N 1.39939 * 108.49160 * 0.39325 * 11 10 9 14 14 C 1.30453 * 108.89756 * 359.75078 * 13 11 10 15 15 C 1.50694 * 125.99136 * 180.02562 * 14 13 11 16 16 N 1.46909 * 109.47201 * 295.37781 * 3 2 1 17 17 C 1.46899 * 110.99450 * 302.88553 * 16 3 2 18 18 C 1.50701 * 109.46845 * 185.63400 * 17 16 3 19 19 O 1.21300 * 120.00051 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00300 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00659 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00002 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00513 * 179.97438 * 21 20 18 24 24 N 1.31404 * 119.99938 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00109 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47255 * 90.00011 * 25 23 21 27 27 H 1.48499 * 109.47260 * 210.00132 * 25 23 21 28 28 H 1.48506 * 109.47204 * 330.00363 * 25 23 21 29 29 H 1.08996 * 109.47181 * 298.73603 * 1 2 3 30 30 H 1.08999 * 109.47096 * 58.73151 * 1 2 3 31 31 H 1.08998 * 109.47638 * 178.72881 * 1 2 3 32 32 H 1.09004 * 109.47112 * 239.99911 * 2 1 3 33 33 H 1.08998 * 109.47354 * 119.99816 * 2 1 3 34 34 H 1.08999 * 109.46895 * 294.99526 * 5 3 2 35 35 H 1.08996 * 109.46964 * 54.99944 * 5 3 2 36 36 H 0.96995 * 120.00443 * 359.97438 * 6 5 3 37 37 H 1.07996 * 126.29110 * 0.02562 * 10 9 7 38 38 H 1.08993 * 109.47354 * 270.31197 * 12 11 10 39 39 H 1.09007 * 109.46631 * 30.31300 * 12 11 10 40 40 H 1.09000 * 109.46950 * 150.30689 * 12 11 10 41 41 H 1.09000 * 109.47375 * 270.00339 * 15 14 13 42 42 H 1.09007 * 109.46979 * 29.99400 * 15 14 13 43 43 H 1.08996 * 109.47571 * 150.00134 * 15 14 13 44 44 H 1.00901 * 111.00084 * 66.83683 * 16 3 2 45 45 H 1.09000 * 109.47633 * 305.63165 * 17 16 3 46 46 H 1.09001 * 109.47204 * 65.63776 * 17 16 3 47 47 H 0.97005 * 119.99706 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00091 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5656 1.4440 0.1162 6 7 4.0631 2.8167 -0.0036 7 6 5.3862 3.0627 0.0696 8 8 6.1670 2.1453 0.2346 9 6 5.8868 4.4442 -0.0505 10 6 5.1241 5.5783 -0.2451 11 7 5.9644 6.6241 -0.2954 12 6 5.5782 8.0242 -0.4869 13 7 7.2721 6.1505 -0.1405 14 6 7.2377 4.8547 0.0060 15 6 8.4295 3.9536 0.2017 16 7 1.6436 2.1020 -1.2514 17 6 2.1483 1.3650 -2.4176 18 6 1.8429 2.1410 -3.6729 19 8 1.2624 3.2037 -3.6028 20 7 2.2157 1.6547 -4.8733 21 6 1.9383 2.3608 -6.0152 22 1 1.4207 3.3066 -5.9529 23 6 2.3232 1.8597 -7.2527 24 7 2.9525 0.7086 -7.3286 25 14 1.9446 2.8215 -8.8086 26 1 3.0713 3.7411 -9.1086 27 1 1.7603 1.8786 -9.9410 28 1 0.7011 3.6096 -8.6133 29 1 -0.3633 0.4941 0.9011 30 1 -0.3633 0.5334 -0.8784 31 1 -0.3634 -1.0274 -0.0228 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8567 1.0353 1.0839 35 1 3.9912 0.8325 -0.6794 36 1 3.4403 3.5485 -0.1357 37 1 4.0488 5.6173 -0.3373 38 1 5.5607 8.2538 -1.5523 39 1 4.5874 8.1889 -0.0634 40 1 6.2991 8.6715 0.0125 41 1 8.7955 3.6192 -0.7690 42 1 9.2180 4.5011 0.7182 43 1 8.1374 3.0888 0.7973 44 1 0.6420 2.2136 -1.2999 45 1 3.2263 1.2329 -2.3254 46 1 1.6656 0.3890 -2.4673 47 1 2.6809 0.8053 -4.9292 48 1 3.2208 0.3586 -8.1925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753469079.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:16 Heat of formation + Delta-G solvation = -1.625150 kcal Electronic energy + Delta-G solvation = -29495.650561 eV Core-core repulsion = 25394.107628 eV Total energy + Delta-G solvation = -4101.542933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43711 -39.38044 -38.40793 -37.20737 -34.24784 -33.94456 -33.77478 -31.76448 -31.16934 -30.85408 -29.46482 -28.48936 -26.64114 -25.84445 -24.26397 -23.54549 -22.19064 -20.44795 -20.21869 -19.62417 -19.05487 -17.93691 -17.59872 -16.81771 -16.05776 -15.85647 -15.63712 -15.41377 -14.96789 -14.64764 -14.42823 -14.23004 -14.12105 -13.93706 -13.66411 -13.54387 -13.47267 -13.19922 -13.05671 -12.63544 -12.52787 -12.31164 -12.21277 -12.00323 -11.88585 -11.76388 -11.50736 -11.34133 -11.07966 -10.91086 -10.86502 -10.75397 -10.40356 -10.21970 -9.67615 -9.50578 -9.40829 -8.94263 -8.59536 -8.49983 -8.08193 -7.95752 -6.41364 -3.82295 1.48013 2.17532 2.25692 3.17205 3.25825 3.30837 3.39043 3.61866 3.91508 4.10118 4.24846 4.35210 4.55537 4.66088 4.81566 4.86990 4.91227 4.98934 5.15106 5.16593 5.17414 5.25440 5.29254 5.33223 5.43741 5.49013 5.59877 5.66974 5.73156 5.77913 5.82805 5.88244 5.91010 5.99657 6.03366 6.09108 6.20546 6.27794 6.51811 6.61933 6.72204 7.14638 7.51386 7.54796 7.57366 7.80753 8.06145 8.49224 8.61421 9.18001 9.55084 10.06233 10.76373 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007610 B = 0.003508 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3678.726815 B = 7978.811298 C =10157.107489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.089 0.911 5 C 0.130 3.870 6 N -0.713 5.713 7 C 0.594 3.406 8 O -0.551 6.551 9 C -0.288 4.288 10 C 0.107 3.893 11 N -0.363 5.363 12 C 0.097 3.903 13 N -0.307 5.307 14 C 0.131 3.869 15 C -0.076 4.076 16 N -0.659 5.659 17 C 0.044 3.956 18 C 0.442 3.558 19 O -0.585 6.585 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.406 0.594 37 H 0.185 0.815 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 5.116 17.931 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.107 0.893 5 C 0.005 3.995 6 N -0.364 5.364 7 C 0.381 3.619 8 O -0.430 6.430 9 C -0.303 4.303 10 C -0.045 4.045 11 N -0.140 5.140 12 C -0.044 4.044 13 N -0.129 5.129 14 C -0.036 4.036 15 C -0.135 4.135 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.470 6.470 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.202 0.798 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.171 0.829 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.185 6.732 17.837 19.329 hybrid contribution -1.469 -1.141 -1.141 2.182 sum 1.716 5.591 16.696 17.691 Atomic orbital electron populations 1.21754 0.95340 1.01972 1.01956 1.22208 0.96682 0.98012 1.03122 1.21924 0.94447 0.93502 0.93890 0.89335 1.21358 0.92651 0.83734 1.01724 1.45607 1.06869 1.09884 1.74025 1.17210 0.81958 0.86880 0.75817 1.90712 1.55919 1.45496 1.50918 1.20239 0.93524 0.93674 1.22821 1.23176 0.97647 0.86853 0.96821 1.48268 1.04493 1.07341 1.53930 1.21992 1.01909 0.76887 1.03610 1.77162 0.97762 1.11658 1.26322 1.22454 0.94892 0.91113 0.95150 1.20328 0.92240 0.97414 1.03469 1.60195 1.19356 1.49941 0.99603 1.21759 1.01274 0.95274 0.90555 1.19802 0.85207 0.87914 0.84279 1.90503 1.46156 1.23744 1.86568 1.41866 1.51466 1.21814 1.04855 1.19672 1.35275 1.04771 0.83217 0.88007 1.25252 0.96855 0.96373 0.99404 1.69608 1.39558 1.18615 1.26384 0.85881 0.78968 0.78979 0.80587 1.20429 1.20918 1.19454 0.92612 0.92470 0.92520 0.90975 0.91305 0.91339 0.91405 0.75827 0.79788 0.90095 0.88994 0.89023 0.90197 0.91310 0.88627 0.82853 0.89452 0.93437 0.77518 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.70 37.16 0.36 -1.05 16 2 C -0.16 -1.55 5.10 -26.74 -0.14 -1.68 16 3 C 0.07 0.77 2.70 -67.71 -0.18 0.59 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 5 C 0.13 1.55 4.76 -4.04 -0.02 1.53 16 6 N -0.71 -9.14 5.38 -61.38 -0.33 -9.47 16 7 C 0.59 8.97 7.81 -12.52 -0.10 8.87 16 8 O -0.55 -9.71 14.92 5.28 0.08 -9.64 16 9 C -0.29 -4.08 6.13 -105.06 -0.64 -4.72 16 10 C 0.11 1.24 10.99 -16.56 -0.18 1.06 16 11 N -0.36 -4.22 3.98 -67.60 -0.27 -4.49 16 12 C 0.10 0.67 11.44 59.85 0.68 1.36 16 13 N -0.31 -4.36 12.50 33.89 0.42 -3.93 16 14 C 0.13 1.90 7.26 -82.02 -0.60 1.30 16 15 C -0.08 -0.94 9.92 36.00 0.36 -0.58 16 16 N -0.66 -9.07 5.32 -107.98 -0.57 -9.64 16 17 C 0.04 0.73 5.31 -4.98 -0.03 0.70 16 18 C 0.44 10.11 7.83 -10.99 -0.09 10.02 16 19 O -0.59 -15.14 15.90 5.54 0.09 -15.05 16 20 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.60 6.87 -51.93 -0.36 0.25 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 6.23 -51.93 -0.32 0.46 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.93 6.61 -51.93 -0.34 0.59 16 36 H 0.41 4.77 7.06 -40.82 -0.29 4.48 16 37 H 0.19 1.57 7.46 -52.49 -0.39 1.17 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 43 H 0.10 1.25 6.55 -51.93 -0.34 0.91 16 44 H 0.35 4.95 7.29 -39.29 -0.29 4.66 16 45 H 0.09 1.47 6.22 -51.93 -0.32 1.14 16 46 H 0.05 0.73 6.48 -51.93 -0.34 0.39 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -34.91 396.90 -6.82 -41.73 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -7.05 Total: 17.19 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -0.81 Total: 9.45 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -0.08 Total: -65.70 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.17 Total: -24.69 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.91 -6.82 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469079.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.100 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds