Wall clock time and date at job start Tue Mar 31 2020 20:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.08998 * 109.46770 * 55.38065 * 3 2 1 5 5 C 1.53005 * 109.46963 * 175.37442 * 3 2 1 6 6 N 1.46497 * 109.46761 * 175.00077 * 5 3 2 7 7 C 1.34779 * 119.99760 * 180.02562 * 6 5 3 8 8 O 1.21601 * 120.00067 * 359.72519 * 7 6 5 9 9 C 1.47432 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.41290 * 126.41154 * 0.02562 * 9 7 6 11 11 N 1.30450 * 108.02154 * 179.97438 * 10 9 7 12 12 N 1.39931 * 108.89737 * 0.02562 * 11 10 9 13 13 C 1.46499 * 125.75628 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46997 * 304.97354 * 13 12 11 15 15 C 1.34263 * 108.49324 * 359.75001 * 12 11 10 16 16 N 1.46901 * 109.47237 * 295.37972 * 3 2 1 17 17 C 1.46898 * 110.99464 * 302.88408 * 16 3 2 18 18 C 1.50703 * 109.46659 * 185.63802 * 17 16 3 19 19 O 1.21299 * 120.00148 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00163 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00339 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00317 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99860 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47330 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47334 * 120.00645 * 25 23 21 28 28 H 1.48505 * 109.47409 * 240.00470 * 25 23 21 29 29 H 1.09004 * 109.47513 * 178.73457 * 1 2 3 30 30 H 1.09008 * 109.47219 * 298.72434 * 1 2 3 31 31 H 1.08998 * 109.47401 * 58.72823 * 1 2 3 32 32 H 1.08999 * 109.46959 * 240.00089 * 2 1 3 33 33 H 1.08998 * 109.47308 * 120.00260 * 2 1 3 34 34 H 1.08999 * 109.46695 * 55.00258 * 5 3 2 35 35 H 1.08993 * 109.47235 * 295.00160 * 5 3 2 36 36 H 0.97001 * 120.00748 * 0.02562 * 6 5 3 37 37 H 1.08005 * 125.99049 * 359.96620 * 10 9 7 38 38 H 1.09001 * 109.47335 * 64.97261 * 13 12 11 39 39 H 1.09004 * 109.47253 * 184.97885 * 13 12 11 40 40 H 1.09001 * 109.47002 * 300.00111 * 14 13 12 41 41 H 1.09003 * 109.47095 * 59.99844 * 14 13 12 42 42 H 1.08993 * 109.47219 * 180.02562 * 14 13 12 43 43 H 1.07999 * 126.29541 * 180.27063 * 15 12 11 44 44 H 1.00896 * 110.99562 * 66.84017 * 16 3 2 45 45 H 1.08994 * 109.47627 * 305.63409 * 17 16 3 46 46 H 1.08999 * 109.46978 * 65.64340 * 17 16 3 47 47 H 0.97002 * 119.99791 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00674 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9796 0.8457 5 6 3.5656 1.4440 0.1163 6 7 4.0630 2.8167 -0.0035 7 6 5.3862 3.0627 0.0687 8 8 6.1667 2.1458 0.2384 9 6 5.8868 4.4442 -0.0513 10 6 5.1054 5.6057 -0.2429 11 7 5.9116 6.6298 -0.2985 12 7 7.2278 6.1792 -0.1479 13 6 8.4267 7.0211 -0.1526 14 6 8.4615 7.8518 -1.4371 15 6 7.2062 4.8458 0.0076 16 7 1.6435 2.1020 -1.2513 17 6 2.1482 1.3651 -2.4175 18 6 1.8428 2.1412 -3.6727 19 8 1.2614 3.2034 -3.6027 20 7 2.2147 1.6545 -4.8732 21 6 1.9363 2.3602 -6.0152 22 1 1.4195 3.3064 -5.9528 23 6 2.3203 1.8586 -7.2528 24 7 2.9497 0.7076 -7.3288 25 14 1.9417 2.8205 -8.8087 26 1 1.2314 4.0756 -8.4543 27 1 3.2097 3.1503 -9.5077 28 1 1.0834 2.0007 -9.7011 29 1 -0.3634 -1.0274 -0.0227 30 1 -0.3634 0.4939 0.9013 31 1 -0.3634 0.5334 -0.8783 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9912 0.8326 -0.6793 35 1 3.8566 1.0353 1.0839 36 1 3.4401 3.5487 -0.1348 37 1 4.0293 5.6398 -0.3285 38 1 8.4066 7.6868 0.7102 39 1 9.3141 6.3899 -0.1041 40 1 8.4815 7.1861 -2.2999 41 1 7.5741 8.4829 -1.4857 42 1 9.3537 8.4778 -1.4408 43 1 8.0636 4.2049 0.1508 44 1 0.6419 2.2135 -1.2996 45 1 3.2262 1.2331 -2.3253 46 1 1.6655 0.3891 -2.4673 47 1 2.6793 0.8048 -4.9293 48 1 3.2174 0.3572 -8.1928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753469273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:23 Heat of formation + Delta-G solvation = -1.704888 kcal Electronic energy + Delta-G solvation = -29160.211063 eV Core-core repulsion = 25058.664672 eV Total energy + Delta-G solvation = -4101.546391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41834 -39.37793 -38.39290 -37.17710 -34.73582 -34.00710 -33.77909 -31.73179 -31.13107 -30.64976 -30.09266 -28.37671 -26.52686 -24.50754 -24.11944 -23.54197 -22.19102 -20.78611 -20.36621 -19.73022 -19.05461 -17.96255 -17.78926 -16.78528 -16.12457 -15.81750 -15.73098 -15.47064 -14.95156 -14.77534 -14.50651 -14.27875 -14.19795 -14.05727 -13.77999 -13.66999 -13.41662 -13.15022 -12.85758 -12.68840 -12.50507 -12.38309 -12.27016 -11.87325 -11.77278 -11.73637 -11.47893 -11.33150 -11.07685 -10.99859 -10.83754 -10.72553 -10.32478 -10.19401 -9.71895 -9.68167 -9.48410 -8.95343 -8.61507 -8.46400 -8.03969 -7.92372 -6.38507 -3.79121 1.50236 2.17867 2.20729 3.18147 3.28453 3.35580 3.42099 3.63052 3.95198 4.12374 4.19432 4.38704 4.58653 4.63631 4.68375 4.77672 4.83476 4.91534 5.01832 5.13866 5.20410 5.24612 5.28520 5.32215 5.33353 5.45816 5.50596 5.60232 5.64855 5.76194 5.80415 5.81746 5.86448 5.90611 6.05307 6.12029 6.23401 6.31064 6.36820 6.65288 6.70361 7.18655 7.46134 7.58245 7.61614 7.81951 8.09910 8.49032 8.64866 9.21466 9.58511 10.09921 10.79377 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.003460 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3950.062813 B = 8089.406776 C =11104.072565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.089 0.911 5 C 0.130 3.870 6 N -0.709 5.709 7 C 0.594 3.406 8 O -0.562 6.562 9 C -0.290 4.290 10 C 0.087 3.913 11 N -0.296 5.296 12 N -0.364 5.364 13 C 0.127 3.873 14 C -0.167 4.167 15 C 0.124 3.876 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.192 0.808 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.186 0.814 44 H 0.352 0.648 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 4.678 18.015 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.107 0.893 5 C 0.005 3.995 6 N -0.360 5.360 7 C 0.382 3.618 8 O -0.442 6.442 9 C -0.304 4.304 10 C -0.101 4.101 11 N -0.116 5.116 12 N -0.143 5.143 13 C 0.007 3.993 14 C -0.225 4.225 15 C -0.028 4.028 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.467 6.467 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.245 0.755 37 H 0.209 0.791 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.203 0.797 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.973 6.480 17.865 20.608 hybrid contribution -0.750 -1.561 -0.994 1.997 sum 7.223 4.919 16.871 19.000 Atomic orbital electron populations 1.21758 0.95326 1.01951 1.02000 1.22211 0.96706 0.98032 1.03083 1.21923 0.94393 0.93482 0.93973 0.89250 1.21362 0.92735 0.83702 1.01673 1.45539 1.06887 1.09952 1.73591 1.17216 0.82110 0.86801 0.75715 1.90742 1.56222 1.45867 1.51398 1.20257 0.93006 0.94609 1.22578 1.24157 1.00283 0.89171 0.96471 1.77151 0.86594 1.23358 1.24471 1.48639 1.06556 1.05236 1.53873 1.21798 0.82968 0.94016 1.00542 1.22068 1.03521 1.00515 0.96399 1.22944 0.98916 0.84951 0.95960 1.60183 1.19408 1.49910 0.99562 1.21758 1.01241 0.95254 0.90597 1.19811 0.85151 0.87893 0.84277 1.90516 1.45927 1.23697 1.86543 1.41871 1.51641 1.21816 1.04853 1.19736 1.35048 1.04735 0.83190 0.87914 1.25250 0.96920 0.96408 0.99397 1.69618 1.39797 1.18702 1.26202 0.85825 0.78087 0.79557 0.81027 1.19227 1.20797 1.20791 0.92543 0.92585 0.92441 0.90996 0.91330 0.91443 0.91365 0.75456 0.79133 0.89445 0.88360 0.91762 0.90835 0.90563 0.79732 0.82793 0.89489 0.93459 0.77553 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.70 37.16 0.36 -1.10 16 2 C -0.16 -1.59 5.10 -26.73 -0.14 -1.73 16 3 C 0.07 0.80 2.70 -67.71 -0.18 0.62 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.13 1.59 4.76 -4.04 -0.02 1.58 16 6 N -0.71 -9.36 5.38 -61.38 -0.33 -9.69 16 7 C 0.59 8.94 7.81 -12.52 -0.10 8.85 16 8 O -0.56 -10.04 16.90 5.28 0.09 -9.95 16 9 C -0.29 -3.91 6.13 -105.07 -0.64 -4.55 16 10 C 0.09 1.12 11.50 -16.98 -0.20 0.92 16 11 N -0.30 -3.92 12.33 30.86 0.38 -3.54 16 12 N -0.36 -3.98 3.65 -60.80 -0.22 -4.20 16 13 C 0.13 0.87 7.21 -4.04 -0.03 0.84 16 14 C -0.17 -1.19 10.09 37.16 0.37 -0.82 16 15 C 0.12 1.43 11.25 -16.56 -0.19 1.24 16 16 N -0.66 -9.40 5.32 -107.99 -0.57 -9.97 16 17 C 0.04 0.75 5.31 -4.98 -0.03 0.72 16 18 C 0.44 10.32 7.83 -10.99 -0.09 10.23 16 19 O -0.58 -15.43 15.90 5.54 0.09 -15.34 16 20 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 25 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.62 6.87 -51.93 -0.36 0.27 16 32 H 0.07 0.79 6.23 -51.93 -0.32 0.47 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.94 6.61 -51.93 -0.34 0.60 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.41 5.08 7.09 -40.82 -0.29 4.79 16 37 H 0.19 2.06 7.50 -52.48 -0.39 1.67 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.41 8.06 -51.93 -0.42 0.00 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.35 5.13 7.28 -39.29 -0.29 4.85 16 45 H 0.09 1.49 6.22 -51.93 -0.32 1.16 16 46 H 0.05 0.74 6.48 -51.93 -0.34 0.40 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -35.14 400.32 -7.13 -42.28 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -7.13 Total: 17.94 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.11 Total: 8.79 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.08 Total: -66.02 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.18 Total: -25.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.14 -7.13 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.572 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds