Wall clock time and date at job start Tue Mar 31 2020 20:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.08998 * 109.46770 * 55.38065 * 3 2 1 5 5 C 1.53005 * 109.46963 * 175.37442 * 3 2 1 6 6 N 1.46497 * 109.46761 * 175.00077 * 5 3 2 7 7 C 1.34779 * 119.99760 * 180.02562 * 6 5 3 8 8 O 1.21601 * 120.00067 * 359.72519 * 7 6 5 9 9 C 1.47432 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.41290 * 126.41154 * 0.02562 * 9 7 6 11 11 N 1.30450 * 108.02154 * 179.97438 * 10 9 7 12 12 N 1.39931 * 108.89737 * 0.02562 * 11 10 9 13 13 C 1.46499 * 125.75628 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46997 * 304.97354 * 13 12 11 15 15 C 1.34263 * 108.49324 * 359.75001 * 12 11 10 16 16 N 1.46901 * 109.47237 * 295.37972 * 3 2 1 17 17 C 1.46898 * 110.99464 * 302.88408 * 16 3 2 18 18 C 1.50703 * 109.46659 * 185.63802 * 17 16 3 19 19 O 1.21299 * 120.00148 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00163 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00339 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00317 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99860 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47330 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47334 * 120.00645 * 25 23 21 28 28 H 1.48505 * 109.47409 * 240.00470 * 25 23 21 29 29 H 1.09004 * 109.47513 * 178.73457 * 1 2 3 30 30 H 1.09008 * 109.47219 * 298.72434 * 1 2 3 31 31 H 1.08998 * 109.47401 * 58.72823 * 1 2 3 32 32 H 1.08999 * 109.46959 * 240.00089 * 2 1 3 33 33 H 1.08998 * 109.47308 * 120.00260 * 2 1 3 34 34 H 1.08999 * 109.46695 * 55.00258 * 5 3 2 35 35 H 1.08993 * 109.47235 * 295.00160 * 5 3 2 36 36 H 0.97001 * 120.00748 * 0.02562 * 6 5 3 37 37 H 1.08005 * 125.99049 * 359.96620 * 10 9 7 38 38 H 1.09001 * 109.47335 * 64.97261 * 13 12 11 39 39 H 1.09004 * 109.47253 * 184.97885 * 13 12 11 40 40 H 1.09001 * 109.47002 * 300.00111 * 14 13 12 41 41 H 1.09003 * 109.47095 * 59.99844 * 14 13 12 42 42 H 1.08993 * 109.47219 * 180.02562 * 14 13 12 43 43 H 1.07999 * 126.29541 * 180.27063 * 15 12 11 44 44 H 1.00896 * 110.99562 * 66.84017 * 16 3 2 45 45 H 1.08994 * 109.47627 * 305.63409 * 17 16 3 46 46 H 1.08999 * 109.46978 * 65.64340 * 17 16 3 47 47 H 0.97002 * 119.99791 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00674 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9796 0.8457 5 6 3.5656 1.4440 0.1163 6 7 4.0630 2.8167 -0.0035 7 6 5.3862 3.0627 0.0687 8 8 6.1667 2.1458 0.2384 9 6 5.8868 4.4442 -0.0513 10 6 5.1054 5.6057 -0.2429 11 7 5.9116 6.6298 -0.2985 12 7 7.2278 6.1792 -0.1479 13 6 8.4267 7.0211 -0.1526 14 6 8.4615 7.8518 -1.4371 15 6 7.2062 4.8458 0.0076 16 7 1.6435 2.1020 -1.2513 17 6 2.1482 1.3651 -2.4175 18 6 1.8428 2.1412 -3.6727 19 8 1.2614 3.2034 -3.6027 20 7 2.2147 1.6545 -4.8732 21 6 1.9363 2.3602 -6.0152 22 1 1.4195 3.3064 -5.9528 23 6 2.3203 1.8586 -7.2528 24 7 2.9497 0.7076 -7.3288 25 14 1.9417 2.8205 -8.8087 26 1 1.2314 4.0756 -8.4543 27 1 3.2097 3.1503 -9.5077 28 1 1.0834 2.0007 -9.7011 29 1 -0.3634 -1.0274 -0.0227 30 1 -0.3634 0.4939 0.9013 31 1 -0.3634 0.5334 -0.8783 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9912 0.8326 -0.6793 35 1 3.8566 1.0353 1.0839 36 1 3.4401 3.5487 -0.1348 37 1 4.0293 5.6398 -0.3285 38 1 8.4066 7.6868 0.7102 39 1 9.3141 6.3899 -0.1041 40 1 8.4815 7.1861 -2.2999 41 1 7.5741 8.4829 -1.4857 42 1 9.3537 8.4778 -1.4408 43 1 8.0636 4.2049 0.1508 44 1 0.6419 2.2135 -1.2996 45 1 3.2262 1.2331 -2.3253 46 1 1.6655 0.3891 -2.4673 47 1 2.6793 0.8048 -4.9293 48 1 3.2174 0.3572 -8.1928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753469273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:23 Heat of formation + Delta-G solvation = -28.937631 kcal Electronic energy + Delta-G solvation = -29161.391964 eV Core-core repulsion = 25058.664672 eV Total energy + Delta-G solvation = -4102.727291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34063 -40.60007 -39.94575 -38.52606 -35.93875 -35.49522 -34.94469 -33.28835 -32.72697 -31.56025 -30.96998 -29.42295 -28.03613 -26.08248 -25.13240 -24.38478 -23.13642 -21.76119 -21.55800 -20.92026 -20.44278 -19.85114 -18.79765 -18.28777 -17.18435 -16.88375 -16.84484 -16.60386 -16.46554 -16.02280 -15.86699 -15.64201 -15.38028 -15.19263 -14.96648 -14.76863 -14.55589 -14.28514 -14.00471 -13.77770 -13.53315 -13.48126 -13.35123 -13.12740 -12.99426 -12.88594 -12.69383 -12.48618 -12.39427 -12.25863 -12.12079 -11.88273 -11.78903 -11.62665 -11.49146 -10.87646 -10.57581 -10.31577 -10.04687 -9.99444 -9.57479 -9.29470 -8.45681 -5.94102 0.56766 1.18027 1.36063 1.40778 1.43137 1.55114 2.08239 2.28583 2.39474 2.54555 2.98469 3.21816 3.47453 3.59088 3.78459 3.81086 4.01332 4.05643 4.08543 4.17299 4.21083 4.32316 4.34581 4.40504 4.43177 4.50494 4.56690 4.61255 4.72125 4.78140 4.84131 4.86930 4.88305 4.98535 5.15013 5.20680 5.29552 5.41233 5.41838 5.43082 5.58649 5.90943 5.91618 6.11587 6.45375 6.52055 6.61315 6.74363 7.14277 7.37755 7.58671 8.13757 8.72183 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.003460 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3950.062813 B = 8089.406776 C =11104.072565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.128 3.872 6 N -0.704 5.704 7 C 0.590 3.410 8 O -0.597 6.597 9 C -0.317 4.317 10 C 0.082 3.918 11 N -0.322 5.322 12 N -0.358 5.358 13 C 0.117 3.883 14 C -0.163 4.163 15 C 0.130 3.870 16 N -0.664 5.664 17 C 0.064 3.936 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.578 5.578 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.202 0.798 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.104 0.896 43 H 0.209 0.791 44 H 0.352 0.648 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 4.670 18.974 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.026 4.026 4 H 0.131 0.869 5 C 0.004 3.996 6 N -0.354 5.354 7 C 0.379 3.621 8 O -0.480 6.480 9 C -0.332 4.332 10 C -0.105 4.105 11 N -0.142 5.142 12 N -0.137 5.137 13 C -0.002 4.002 14 C -0.221 4.221 15 C -0.023 4.023 16 N -0.297 5.297 17 C -0.068 4.068 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.215 5.215 21 C -0.460 4.460 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.199 1.199 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.250 0.750 37 H 0.218 0.782 38 H 0.122 0.878 39 H 0.149 0.851 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.226 0.774 44 H 0.172 0.828 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.574 6.479 18.841 21.691 hybrid contribution -0.897 -1.511 -1.216 2.137 sum 7.677 4.968 17.625 19.856 Atomic orbital electron populations 1.21746 0.94855 1.02304 1.01941 1.22169 0.96982 0.96944 1.03486 1.21963 0.93444 0.94476 0.92758 0.86913 1.21446 0.93451 0.83004 1.01689 1.45560 1.06533 1.10500 1.72768 1.17472 0.82340 0.87096 0.75172 1.90709 1.57015 1.46900 1.53347 1.20320 0.94145 0.94063 1.24698 1.24356 1.00945 0.88972 0.96254 1.77092 0.87855 1.23943 1.25297 1.49003 1.06774 1.05482 1.52434 1.22250 0.82486 0.94564 1.00897 1.22041 1.03870 1.00250 0.95946 1.23345 0.99048 0.85433 0.94458 1.60133 1.19402 1.50383 0.99805 1.21501 1.01591 0.95127 0.88623 1.20875 0.83219 0.87595 0.85395 1.90485 1.47045 1.25401 1.87307 1.41964 1.52402 1.21933 1.05192 1.19697 1.36578 1.04771 0.84921 0.90232 1.26030 0.96284 0.97261 1.01836 1.69683 1.39932 1.19523 1.27250 0.84895 0.78209 0.78098 0.77299 1.19659 1.19865 1.19494 0.91950 0.91127 0.94087 0.92219 0.89334 0.93235 0.90062 0.75035 0.78159 0.87804 0.85097 0.93407 0.92975 0.87711 0.77399 0.82770 0.89249 0.91533 0.77323 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.70 71.98 0.70 -1.85 16 2 C -0.16 -2.75 5.10 30.59 0.16 -2.59 16 3 C 0.08 1.67 2.70 44.92 0.12 1.79 16 4 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.13 3.01 4.76 86.38 0.41 3.42 16 6 N -0.70 -18.27 5.38 -466.37 -2.51 -20.78 16 7 C 0.59 17.77 7.81 86.66 0.68 18.44 16 8 O -0.60 -21.33 16.90 -4.03 -0.07 -21.39 16 9 C -0.32 -8.53 6.13 -20.15 -0.12 -8.65 16 10 C 0.08 2.12 11.50 85.65 0.99 3.11 16 11 N -0.32 -8.46 12.33 -56.27 -0.69 -9.16 16 12 N -0.36 -7.45 3.65 -346.28 -1.26 -8.72 16 13 C 0.12 1.35 7.21 86.38 0.62 1.98 16 14 C -0.16 -2.13 10.09 71.98 0.73 -1.40 16 15 C 0.13 2.88 11.25 84.28 0.95 3.83 16 16 N -0.66 -18.40 5.32 -495.58 -2.64 -21.04 16 17 C 0.06 2.16 5.31 85.56 0.45 2.62 16 18 C 0.44 20.92 7.83 87.66 0.69 21.61 16 19 O -0.62 -33.39 15.90 -3.09 -0.05 -33.44 16 20 N -0.58 -30.17 5.29 -306.98 -1.62 -31.79 16 21 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.92 13.05 21.66 0.28 -50.64 16 25 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.04 0.83 6.87 -2.39 -0.02 0.81 16 32 H 0.06 1.21 6.23 -2.39 -0.01 1.20 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.36 6.61 -2.39 -0.02 1.34 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 10.07 7.09 -92.71 -0.66 9.42 16 37 H 0.20 4.41 7.50 -2.91 -0.02 4.39 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.13 0.69 8.06 -2.38 -0.02 0.67 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.21 3.44 8.06 -2.91 -0.02 3.42 16 44 H 0.35 9.97 7.28 -89.70 -0.65 9.32 16 45 H 0.09 3.04 6.22 -2.39 -0.01 3.02 16 46 H 0.07 2.02 6.48 -2.39 -0.02 2.01 16 47 H 0.39 19.86 7.90 -92.71 -0.73 19.13 16 48 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -77.41 400.32 0.08 -77.33 By element: Atomic # 1 Polarization: 51.16 SS G_CDS: -1.03 Total: 50.13 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 7.64 Total: 23.75 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -8.44 Total: -142.12 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.12 Total: -54.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.41 0.08 -77.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.390 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds