Wall clock time and date at job start Tue Mar 31 2020 19:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47375 * 2 1 4 4 N 1.33321 * 126.10499 * 270.00266 * 3 2 1 5 5 C 1.30856 * 109.68323 * 179.97438 * 4 3 2 6 6 N 1.34498 * 109.16121 * 359.76150 * 5 4 3 7 7 H 0.97001 * 126.46921 * 180.25062 * 6 5 4 8 8 C 1.36658 * 126.10757 * 90.00076 * 3 2 1 9 9 C 1.46768 * 126.84211 * 359.96402 * 8 3 2 10 10 O 1.21675 * 120.00361 * 359.97438 * 9 8 3 11 11 N 1.34781 * 119.99769 * 180.02562 * 9 8 3 12 12 C 1.46497 * 120.00055 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47162 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47076 * 304.99867 * 13 12 11 15 15 C 1.53004 * 109.47412 * 64.99947 * 13 12 11 16 16 C 1.53006 * 109.47268 * 185.00067 * 13 12 11 17 17 N 1.46898 * 109.47138 * 174.99901 * 16 13 12 18 18 C 1.46906 * 110.99888 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.47140 * 179.97438 * 18 17 16 20 20 O 1.21289 * 119.99678 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99614 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99518 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00466 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00085 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99807 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00303 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46680 * 60.00313 * 26 24 22 28 28 H 1.48496 * 109.46939 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47298 * 300.00205 * 26 24 22 30 30 H 1.09003 * 109.47105 * 299.99893 * 1 2 3 31 31 H 1.09002 * 109.47089 * 59.99814 * 1 2 3 32 32 H 1.09003 * 109.47449 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47105 * 240.00107 * 2 1 3 34 34 H 1.09002 * 109.47089 * 120.00186 * 2 1 3 35 35 H 1.07997 * 125.42200 * 180.02562 * 5 4 3 36 36 H 0.96998 * 120.00074 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.46785 * 59.99797 * 12 11 9 38 38 H 1.09001 * 109.46833 * 299.99849 * 12 11 9 39 39 H 1.08997 * 109.46495 * 60.00353 * 15 13 12 40 40 H 1.09001 * 109.47106 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.46646 * 300.00184 * 15 13 12 42 42 H 1.08997 * 109.46770 * 54.99847 * 16 13 12 43 43 H 1.08995 * 109.47019 * 295.00060 * 16 13 12 44 44 H 1.00901 * 111.00121 * 56.04666 * 17 16 13 45 45 H 1.09004 * 109.47040 * 299.99934 * 18 17 16 46 46 H 1.09000 * 109.47033 * 59.99886 * 18 17 16 47 47 H 0.96996 * 120.00269 * 359.97438 * 21 19 18 48 48 H 0.97002 * 120.00022 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2942 2.1615 -1.0772 5 6 2.7122 3.3451 -0.7072 6 7 2.7283 3.4075 0.6362 7 1 2.9925 4.1698 1.1748 8 6 2.3008 2.1801 1.1041 9 6 2.1567 1.7746 2.5072 10 8 1.7603 0.6570 2.7800 11 7 2.4625 2.6406 3.4937 12 6 2.3181 2.2361 4.8943 13 6 2.7272 3.3956 5.8048 14 1 3.7354 3.7209 5.5481 15 6 1.7524 4.5599 5.6172 16 6 2.6960 2.9343 7.2633 17 7 3.2028 4.0086 8.1276 18 6 3.1880 3.6003 9.5387 19 6 3.7141 4.7250 10.3926 20 8 4.0661 5.7646 9.8766 21 7 3.7933 4.5755 11.7298 22 6 4.2713 5.5990 12.5067 23 1 4.5848 6.5247 12.0473 24 6 4.3525 5.4452 13.8853 25 7 3.9707 4.3189 14.4444 26 14 5.0046 6.8394 14.9439 27 1 4.1465 8.0383 14.7666 28 1 4.9891 6.4267 16.3702 29 1 6.3956 7.1615 14.5363 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9947 4.1459 -1.3744 36 1 2.7774 3.5319 3.2764 37 1 2.9574 1.3755 5.0917 38 1 1.2795 1.9697 5.0903 39 1 0.7443 4.2345 5.8740 40 1 2.0436 5.3857 6.2662 41 1 1.7746 4.8884 4.5781 42 1 3.3224 2.0497 7.3780 43 1 1.6714 2.6931 7.5463 44 1 2.6783 4.8598 7.9917 45 1 2.1669 3.3634 9.8377 46 1 3.8181 2.7204 9.6688 47 1 3.5114 3.7442 12.1424 48 1 4.0277 4.2113 15.4067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753640518.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:09 Heat of formation + Delta-G solvation = -31.597763 kcal Electronic energy + Delta-G solvation = -27817.576981 eV Core-core repulsion = 23714.734337 eV Total energy + Delta-G solvation = -4102.842643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68837 -39.77993 -38.43202 -37.33674 -35.25356 -34.42943 -33.88394 -32.74901 -32.07051 -31.22130 -29.56249 -27.48822 -27.07006 -25.10892 -24.22854 -23.35087 -22.88916 -21.42253 -20.81352 -19.90439 -19.34042 -18.98552 -17.91599 -16.73406 -16.61254 -16.17549 -16.02305 -15.69220 -15.27001 -15.11363 -14.73121 -14.56432 -14.26344 -14.24833 -14.16240 -13.77050 -13.73001 -13.48833 -13.08011 -12.85748 -12.72069 -12.65104 -12.11448 -11.74596 -11.64075 -11.57947 -11.34838 -11.23708 -11.11317 -11.05354 -10.98247 -10.82375 -10.48202 -10.46684 -10.24437 -10.19756 -9.55172 -9.53016 -8.92434 -8.50980 -8.11970 -7.99149 -6.44331 -3.85472 0.85503 2.38220 2.41290 2.70710 2.92937 3.17820 3.23871 3.27997 3.87430 3.98339 4.04103 4.24604 4.32489 4.54638 4.60458 4.64805 4.73448 4.79756 5.08404 5.15832 5.21817 5.22097 5.24221 5.26433 5.33660 5.37704 5.44881 5.50815 5.60793 5.73419 5.75249 5.77652 5.87798 5.94281 5.95305 5.97981 6.01508 6.09158 6.18125 6.23280 6.69174 6.98468 7.14116 7.47220 7.52206 7.59387 7.74334 8.02999 8.58116 9.14731 9.51154 10.02386 10.73205 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034050 B = 0.001489 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.115957 B =18794.838702 C =19375.279311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.103 3.897 4 N -0.498 5.498 5 C 0.221 3.779 6 N -0.556 5.556 7 H 0.423 0.577 8 C -0.094 4.094 9 C 0.594 3.406 10 O -0.519 6.519 11 N -0.726 5.726 12 C 0.126 3.874 13 C -0.102 4.102 14 H 0.088 0.912 15 C -0.152 4.152 16 C 0.066 3.934 17 N -0.669 5.669 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.562 5.562 22 C -0.302 4.302 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.932 3.068 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.216 0.784 36 H 0.394 0.606 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -5.058 -27.184 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.031 4.031 4 N -0.217 5.217 5 C -0.063 4.063 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.210 4.210 9 C 0.380 3.620 10 O -0.394 6.394 11 N -0.378 5.378 12 C 0.002 3.998 13 C -0.121 4.121 14 H 0.107 0.893 15 C -0.210 4.210 16 C -0.064 4.064 17 N -0.302 5.302 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.470 6.470 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.169 0.831 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.246 -5.687 -27.958 29.008 hybrid contribution -0.298 1.528 2.013 2.545 sum -5.544 -4.158 -25.945 26.854 Atomic orbital electron populations 1.21612 0.94281 1.01902 1.01739 1.20081 0.96293 0.88664 1.03809 1.21095 0.98397 0.97060 0.86576 1.70158 1.18415 1.02723 1.30454 1.25191 1.01149 0.97940 0.82017 1.43357 1.50753 1.13130 1.08897 0.73880 1.20943 1.16596 0.88302 0.95110 1.16807 0.77741 0.84894 0.82542 1.90840 1.46092 1.19693 1.82818 1.45897 1.68555 1.16606 1.06735 1.21439 1.02263 0.97467 0.78582 1.21376 1.01040 0.94880 0.94829 0.89320 1.21905 0.99122 0.98477 1.01466 1.21874 0.98219 0.95266 0.91055 1.60087 1.59898 1.05731 1.04479 1.21675 0.99797 0.98491 0.88290 1.19797 0.85407 0.89225 0.83037 1.90512 1.53911 1.29743 1.72788 1.41857 1.56511 1.16826 1.04704 1.19656 1.39057 0.96181 0.88221 0.87971 1.25269 0.97549 0.97861 0.97202 1.69606 1.47596 1.24904 1.12114 0.85907 0.79470 0.80530 0.78245 1.19932 1.20951 1.19878 0.92637 0.92900 0.92065 0.90558 0.88733 0.76735 0.77214 0.90772 0.90973 0.92486 0.91277 0.93097 0.90653 0.95072 0.83096 0.93812 0.89521 0.77425 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.05 -0.47 5.93 -27.88 -0.17 -0.64 16 3 C 0.10 1.04 6.40 -82.52 -0.53 0.51 16 4 N -0.50 -4.73 11.20 -10.65 -0.12 -4.85 16 5 C 0.22 1.26 13.01 -90.57 -1.18 0.08 16 6 N -0.56 -2.86 6.07 -10.79 -0.07 -2.93 16 7 H 0.42 0.73 8.32 -40.82 -0.34 0.39 16 8 C -0.09 -0.83 7.08 -82.15 -0.58 -1.41 16 9 C 0.59 5.87 7.79 -12.81 -0.10 5.77 16 10 O -0.52 -6.69 14.82 5.21 0.08 -6.61 16 11 N -0.73 -5.42 5.28 -61.59 -0.33 -5.74 16 12 C 0.13 1.05 5.06 -4.05 -0.02 1.03 16 13 C -0.10 -0.88 2.63 -90.62 -0.24 -1.12 16 14 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 16 C 0.07 0.72 5.14 -3.82 -0.02 0.70 16 17 N -0.67 -10.09 6.12 -115.05 -0.70 -10.79 16 18 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 19 C 0.44 10.22 7.82 -10.99 -0.09 10.14 16 20 O -0.59 -15.62 15.78 5.55 0.09 -15.53 16 21 N -0.56 -14.12 5.29 -10.97 -0.06 -14.18 16 22 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 26 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.98 6.48 -51.93 -0.34 0.64 16 35 H 0.22 0.26 8.06 -52.49 -0.42 -0.16 16 36 H 0.39 1.96 6.90 -40.82 -0.28 1.67 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.66 6.68 -51.93 -0.35 0.31 16 41 H 0.05 0.32 7.18 -51.93 -0.37 -0.06 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.35 5.39 6.68 -39.29 -0.26 5.13 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -35.18 400.79 -9.13 -44.31 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.27 Total: 11.85 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -2.49 Total: 6.20 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.55 Total: -62.08 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.16 Total: -22.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.18 -9.13 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753640518.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.714 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds