Wall clock time and date at job start Tue Mar 31 2020 19:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47375 * 2 1 4 4 N 1.33321 * 126.10499 * 270.00266 * 3 2 1 5 5 C 1.30856 * 109.68323 * 179.97438 * 4 3 2 6 6 N 1.34498 * 109.16121 * 359.76150 * 5 4 3 7 7 H 0.97001 * 126.46921 * 180.25062 * 6 5 4 8 8 C 1.36658 * 126.10757 * 90.00076 * 3 2 1 9 9 C 1.46768 * 126.84211 * 359.96402 * 8 3 2 10 10 O 1.21675 * 120.00361 * 359.97438 * 9 8 3 11 11 N 1.34781 * 119.99769 * 180.02562 * 9 8 3 12 12 C 1.46497 * 120.00055 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47162 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47076 * 304.99867 * 13 12 11 15 15 C 1.53004 * 109.47412 * 64.99947 * 13 12 11 16 16 C 1.53006 * 109.47268 * 185.00067 * 13 12 11 17 17 N 1.46898 * 109.47138 * 174.99901 * 16 13 12 18 18 C 1.46906 * 110.99888 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.47140 * 179.97438 * 18 17 16 20 20 O 1.21289 * 119.99678 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99614 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99518 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00466 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00085 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99807 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00303 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46680 * 60.00313 * 26 24 22 28 28 H 1.48496 * 109.46939 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47298 * 300.00205 * 26 24 22 30 30 H 1.09003 * 109.47105 * 299.99893 * 1 2 3 31 31 H 1.09002 * 109.47089 * 59.99814 * 1 2 3 32 32 H 1.09003 * 109.47449 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47105 * 240.00107 * 2 1 3 34 34 H 1.09002 * 109.47089 * 120.00186 * 2 1 3 35 35 H 1.07997 * 125.42200 * 180.02562 * 5 4 3 36 36 H 0.96998 * 120.00074 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.46785 * 59.99797 * 12 11 9 38 38 H 1.09001 * 109.46833 * 299.99849 * 12 11 9 39 39 H 1.08997 * 109.46495 * 60.00353 * 15 13 12 40 40 H 1.09001 * 109.47106 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.46646 * 300.00184 * 15 13 12 42 42 H 1.08997 * 109.46770 * 54.99847 * 16 13 12 43 43 H 1.08995 * 109.47019 * 295.00060 * 16 13 12 44 44 H 1.00901 * 111.00121 * 56.04666 * 17 16 13 45 45 H 1.09004 * 109.47040 * 299.99934 * 18 17 16 46 46 H 1.09000 * 109.47033 * 59.99886 * 18 17 16 47 47 H 0.96996 * 120.00269 * 359.97438 * 21 19 18 48 48 H 0.97002 * 120.00022 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2942 2.1615 -1.0772 5 6 2.7122 3.3451 -0.7072 6 7 2.7283 3.4075 0.6362 7 1 2.9925 4.1698 1.1748 8 6 2.3008 2.1801 1.1041 9 6 2.1567 1.7746 2.5072 10 8 1.7603 0.6570 2.7800 11 7 2.4625 2.6406 3.4937 12 6 2.3181 2.2361 4.8943 13 6 2.7272 3.3956 5.8048 14 1 3.7354 3.7209 5.5481 15 6 1.7524 4.5599 5.6172 16 6 2.6960 2.9343 7.2633 17 7 3.2028 4.0086 8.1276 18 6 3.1880 3.6003 9.5387 19 6 3.7141 4.7250 10.3926 20 8 4.0661 5.7646 9.8766 21 7 3.7933 4.5755 11.7298 22 6 4.2713 5.5990 12.5067 23 1 4.5848 6.5247 12.0473 24 6 4.3525 5.4452 13.8853 25 7 3.9707 4.3189 14.4444 26 14 5.0046 6.8394 14.9439 27 1 4.1465 8.0383 14.7666 28 1 4.9891 6.4267 16.3702 29 1 6.3956 7.1615 14.5363 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9947 4.1459 -1.3744 36 1 2.7774 3.5319 3.2764 37 1 2.9574 1.3755 5.0917 38 1 1.2795 1.9697 5.0903 39 1 0.7443 4.2345 5.8740 40 1 2.0436 5.3857 6.2662 41 1 1.7746 4.8884 4.5781 42 1 3.3224 2.0497 7.3780 43 1 1.6714 2.6931 7.5463 44 1 2.6783 4.8598 7.9917 45 1 2.1669 3.3634 9.8377 46 1 3.8181 2.7204 9.6688 47 1 3.5114 3.7442 12.1424 48 1 4.0277 4.2113 15.4067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753640518.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:08 Heat of formation + Delta-G solvation = -58.630147 kcal Electronic energy + Delta-G solvation = -27818.749193 eV Core-core repulsion = 23714.734337 eV Total energy + Delta-G solvation = -4104.014855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24535 -40.54180 -40.15137 -38.34330 -36.28845 -35.80267 -35.08949 -33.61622 -33.23396 -32.75864 -30.20722 -28.79817 -27.82353 -26.60777 -25.21138 -24.34327 -23.55884 -22.08017 -21.57450 -21.12571 -20.50364 -19.92945 -19.62792 -17.95181 -17.25952 -17.21859 -16.94194 -16.82678 -16.46196 -16.06345 -15.94012 -15.70966 -15.41156 -15.36098 -15.02615 -14.84197 -14.65836 -14.34491 -14.33799 -13.95527 -13.59545 -13.46608 -13.34889 -13.31093 -13.08723 -12.79844 -12.43774 -12.41764 -12.15342 -12.11113 -11.99176 -11.86591 -11.78879 -11.50655 -11.50274 -11.04586 -10.91687 -10.35361 -10.27131 -10.02244 -9.52936 -9.33514 -8.46864 -5.95965 0.23821 1.39862 1.41964 1.52878 1.84793 1.85004 2.04718 2.11481 2.22879 2.29390 2.94127 3.20413 3.50319 3.52560 3.73451 3.87451 3.89735 3.96036 4.08752 4.20875 4.32434 4.46278 4.48370 4.50582 4.53106 4.56593 4.57874 4.65969 4.73552 4.77069 4.78297 4.92377 4.97617 5.07501 5.16143 5.24679 5.27964 5.31849 5.39278 5.40351 5.52293 5.87655 6.09002 6.29198 6.40380 6.42576 6.59426 6.92308 7.05241 7.11831 7.55693 8.10563 8.70145 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034050 B = 0.001489 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.115957 B =18794.838702 C =19375.279311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.082 3.918 4 N -0.536 5.536 5 C 0.240 3.760 6 N -0.541 5.541 7 H 0.440 0.560 8 C -0.108 4.108 9 C 0.592 3.408 10 O -0.556 6.556 11 N -0.713 5.713 12 C 0.133 3.867 13 C -0.088 4.088 14 H 0.087 0.913 15 C -0.150 4.150 16 C 0.065 3.935 17 N -0.681 5.681 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.261 0.739 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.345 0.655 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -4.248 -28.013 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.053 4.053 4 N -0.256 5.256 5 C -0.045 4.045 6 N -0.147 5.147 7 H 0.282 0.718 8 C -0.224 4.224 9 C 0.380 3.620 10 O -0.434 6.434 11 N -0.364 5.364 12 C 0.009 3.991 13 C -0.108 4.108 14 H 0.105 0.895 15 C -0.208 4.208 16 C -0.064 4.064 17 N -0.314 5.314 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.277 0.723 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.165 0.835 45 H 0.084 0.916 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.161 -4.857 -28.777 29.636 hybrid contribution -0.314 1.298 2.175 2.552 sum -5.475 -3.558 -26.602 27.392 Atomic orbital electron populations 1.21540 0.93876 1.02395 1.00946 1.20035 0.96662 0.89022 1.03171 1.21239 0.99114 0.97455 0.87443 1.70138 1.20270 1.04366 1.30824 1.26075 0.98316 0.97638 0.82454 1.43268 1.49857 1.12530 1.09032 0.71797 1.20722 1.17724 0.89700 0.94266 1.16970 0.77250 0.84570 0.83242 1.90819 1.47898 1.21285 1.83429 1.45728 1.67757 1.16949 1.06013 1.21294 1.01863 0.97050 0.78852 1.21211 1.01167 0.95030 0.93349 0.89481 1.21888 0.98792 0.97595 1.02513 1.21968 0.98713 0.94176 0.91557 1.60087 1.60825 1.06836 1.03681 1.21540 1.00850 0.96076 0.88445 1.20881 0.83712 0.90140 0.82816 1.90479 1.55203 1.31870 1.73425 1.41936 1.57075 1.16534 1.05466 1.19650 1.41123 0.96505 0.89331 0.90219 1.26049 0.97205 1.00229 0.97750 1.69669 1.47646 1.26095 1.12651 0.84978 0.78696 0.77654 0.76948 1.19640 1.19549 1.19733 0.94058 0.92827 0.90970 0.90233 0.90185 0.72307 0.75567 0.91432 0.91351 0.92442 0.92746 0.90986 0.90182 0.94012 0.83492 0.91614 0.87841 0.76978 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.89 71.98 0.71 -1.58 16 2 C -0.05 -0.99 5.93 29.85 0.18 -0.81 16 3 C 0.08 1.63 6.40 41.96 0.27 1.90 16 4 N -0.54 -9.53 11.20 -187.59 -2.10 -11.63 16 5 C 0.24 2.07 13.01 180.33 2.35 4.41 16 6 N -0.54 -4.27 6.07 -188.05 -1.14 -5.41 16 7 H 0.44 0.15 8.32 -92.71 -0.77 -0.62 16 8 C -0.11 -1.80 7.08 40.01 0.28 -1.52 16 9 C 0.59 11.39 7.79 86.47 0.67 12.06 16 10 O -0.56 -14.59 14.82 -4.27 -0.06 -14.66 16 11 N -0.71 -9.55 5.28 -467.01 -2.47 -12.02 16 12 C 0.13 2.04 5.06 86.38 0.44 2.48 16 13 C -0.09 -1.37 2.63 -10.79 -0.03 -1.40 16 14 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 15 C -0.15 -2.15 8.84 71.98 0.64 -1.51 16 16 C 0.07 1.31 5.14 86.31 0.44 1.76 16 17 N -0.68 -19.71 6.12 -517.92 -3.17 -22.88 16 18 C 0.06 2.09 6.17 85.56 0.53 2.61 16 19 C 0.44 20.40 7.82 87.66 0.69 21.08 16 20 O -0.62 -33.81 15.78 -3.06 -0.05 -33.85 16 21 N -0.57 -29.09 5.29 -306.99 -1.62 -30.71 16 22 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 26 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.77 6.48 -2.39 -0.02 1.75 16 35 H 0.26 -0.49 8.06 -2.91 -0.02 -0.51 16 36 H 0.41 3.08 6.90 -92.71 -0.64 2.44 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.97 6.68 -2.39 -0.02 0.95 16 41 H 0.07 0.71 7.18 -2.39 -0.02 0.69 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.35 10.42 6.68 -89.69 -0.60 9.82 16 45 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -77.93 400.79 -1.58 -79.51 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -1.72 Total: 35.03 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 8.44 Total: 21.15 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -10.22 Total: -131.66 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.11 Total: -48.51 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -77.93 -1.58 -79.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753640518.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.883 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds