Wall clock time and date at job start Tue Mar 31 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46725 * 2 1 4 4 N 1.33319 * 126.11058 * 90.02454 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47165 * 179.70725 * 6 5 4 8 8 C 1.36670 * 126.10423 * 269.98138 * 3 2 1 9 9 C 1.46757 * 126.84532 * 0.06955 * 8 3 2 10 10 O 1.21682 * 120.00349 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00161 * 180.02562 * 9 8 3 12 12 C 1.46498 * 120.00165 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46987 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.47494 * 54.99530 * 13 12 11 15 15 C 1.53003 * 109.47043 * 294.99612 * 13 12 11 16 16 C 1.52999 * 109.47057 * 174.99951 * 13 12 11 17 17 N 1.46901 * 109.47103 * 184.99524 * 16 13 12 18 18 C 1.46898 * 111.00108 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.47295 * 180.02562 * 18 17 16 20 20 O 1.21296 * 120.00007 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00348 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00323 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00044 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00083 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00122 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99965 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47165 * 89.99954 * 26 24 22 28 28 H 1.48501 * 109.46590 * 209.99948 * 26 24 22 29 29 H 1.48502 * 109.46924 * 329.99376 * 26 24 22 30 30 H 1.08997 * 109.47141 * 299.99866 * 1 2 3 31 31 H 1.09000 * 109.47194 * 60.00364 * 1 2 3 32 32 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47141 * 240.00134 * 2 1 3 34 34 H 1.09000 * 109.47194 * 119.99636 * 2 1 3 35 35 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99259 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47141 * 299.99856 * 12 11 9 38 38 H 1.08990 * 109.47096 * 59.99937 * 12 11 9 39 39 H 1.09002 * 109.46773 * 60.00113 * 15 13 12 40 40 H 1.08999 * 109.47174 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.47242 * 300.00310 * 15 13 12 42 42 H 1.08998 * 109.47259 * 304.99200 * 16 13 12 43 43 H 1.09001 * 109.47373 * 65.00024 * 16 13 12 44 44 H 1.00902 * 111.00106 * 56.04846 * 17 16 13 45 45 H 1.08994 * 109.47280 * 300.00241 * 18 17 16 46 46 H 1.08998 * 109.46934 * 60.00320 * 18 17 16 47 47 H 0.97004 * 119.99799 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00234 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2946 2.1615 1.0771 5 6 2.7133 3.3448 0.7071 6 7 2.7289 3.4074 -0.6363 7 1 2.9929 4.1697 -1.1750 8 6 2.3010 2.1800 -1.1042 9 6 2.1567 1.7746 -2.5073 10 8 1.7598 0.6572 -2.7800 11 7 2.4637 2.6401 -3.4938 12 6 2.3191 2.2356 -4.8944 13 6 2.7310 3.3941 -5.8049 14 1 3.7397 3.7175 -5.5478 15 6 1.7584 4.5604 -5.6180 16 6 2.6996 2.9326 -7.2633 17 7 3.2088 4.0058 -8.1276 18 6 3.1939 3.5972 -9.5386 19 6 3.7225 4.7207 -10.3925 20 8 4.0772 5.7596 -9.8765 21 7 3.8010 4.5714 -11.7297 22 6 4.2814 5.5937 -12.5066 23 1 4.5965 6.5189 -12.0472 24 6 4.3629 5.4394 -13.8851 25 7 4.8229 6.4195 -14.6299 26 14 3.8172 3.8393 -14.6798 27 1 2.3752 3.9242 -15.0240 28 1 4.6080 3.6053 -15.9148 29 1 4.0349 2.7167 -13.7324 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.9963 4.1454 1.3744 36 1 2.7804 3.5308 -3.2764 37 1 2.9574 1.3744 -5.0917 38 1 1.2803 1.9705 -5.0906 39 1 1.7808 4.8891 -4.5790 40 1 2.0521 5.3859 -6.2663 41 1 0.7497 4.2370 -5.8751 42 1 3.3243 2.0468 -7.3777 43 1 1.6746 2.6935 -7.5468 44 1 4.1343 4.2903 -7.8437 45 1 3.8222 2.7161 -9.6683 46 1 2.1725 3.3624 -9.8380 47 1 3.5170 3.7408 -12.1424 48 1 4.8795 6.3120 -15.5923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753640519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:13 Heat of formation + Delta-G solvation = -24.798253 kcal Electronic energy + Delta-G solvation = -27868.685832 eV Core-core repulsion = 23766.138037 eV Total energy + Delta-G solvation = -4102.547794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70709 -39.80494 -38.59371 -37.37281 -35.30327 -34.47263 -33.93910 -32.81018 -32.12856 -31.66983 -29.58384 -27.64970 -26.98761 -25.09742 -24.19629 -23.28819 -22.86769 -21.44839 -20.97592 -19.97036 -19.42241 -19.09987 -18.31822 -16.64070 -16.60391 -16.24327 -15.95359 -15.80465 -15.30213 -15.11307 -14.98450 -14.67743 -14.42812 -14.23064 -14.17025 -13.77468 -13.65940 -13.37518 -13.23456 -12.77115 -12.67102 -12.65461 -12.15139 -12.09505 -11.86196 -11.76407 -11.34545 -11.30828 -11.19546 -11.14182 -11.04256 -10.84555 -10.62515 -10.50087 -10.22526 -10.01032 -9.60908 -9.58356 -8.94507 -8.64655 -8.24214 -8.19340 -6.34600 -3.86241 0.83214 2.36180 2.39273 2.67601 2.90375 2.99760 3.04447 3.12732 3.69724 3.96135 3.99412 4.07405 4.29991 4.51228 4.55040 4.62282 4.72121 4.72907 4.92381 5.14128 5.17654 5.18134 5.20054 5.23938 5.30940 5.35820 5.44982 5.51690 5.55520 5.68852 5.72151 5.74187 5.76180 5.84480 5.89410 5.93317 5.97372 6.05085 6.16053 6.24839 6.67219 6.95468 7.00119 7.45292 7.48431 7.54534 7.71370 8.10582 8.55903 8.91179 9.38710 9.78528 10.78424 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.001554 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.742165 B =18009.196815 C =18674.687924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.104 3.896 4 N -0.498 5.498 5 C 0.222 3.778 6 N -0.556 5.556 7 H 0.423 0.577 8 C -0.095 4.095 9 C 0.594 3.406 10 O -0.519 6.519 11 N -0.726 5.726 12 C 0.125 3.875 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.140 4.140 16 C 0.066 3.934 17 N -0.666 5.666 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.566 6.566 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.217 0.783 36 H 0.394 0.606 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.350 0.650 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -10.518 28.105 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.031 4.031 4 N -0.217 5.217 5 C -0.062 4.062 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.210 4.210 9 C 0.380 3.620 10 O -0.395 6.395 11 N -0.378 5.378 12 C 0.002 3.998 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.198 4.198 16 C -0.064 4.064 17 N -0.298 5.298 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.448 6.448 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.228 0.772 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.169 0.831 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.841 -10.498 28.749 31.362 hybrid contribution 0.859 -0.457 -1.822 2.066 sum -5.982 -10.956 26.927 29.680 Atomic orbital electron populations 1.21614 0.94260 1.01905 1.01770 1.20081 0.96314 0.88658 1.03785 1.21100 0.98366 0.97062 0.86579 1.70159 1.18400 1.02742 1.30447 1.25198 1.01098 0.97936 0.82015 1.43359 1.50745 1.13126 1.08903 0.73870 1.20935 1.16656 0.88319 0.95086 1.16808 0.77718 0.84882 0.82554 1.90840 1.46103 1.19715 1.82833 1.45893 1.68507 1.16693 1.06703 1.21446 1.02380 0.97318 0.78675 1.21352 1.00742 0.95363 0.94506 0.90508 1.21766 0.98828 0.98557 1.00606 1.21895 1.00938 0.92417 0.91178 1.60038 1.31801 1.37029 1.00953 1.21701 1.01613 0.96118 0.89044 1.19699 0.84801 0.89393 0.82605 1.90560 1.52424 1.29359 1.72459 1.42207 1.58708 1.15988 1.06016 1.19430 1.39175 0.96292 0.88610 0.86293 1.25043 0.97452 0.97642 0.95984 1.69620 1.44989 1.31506 1.05934 0.86667 0.79581 0.83112 0.79990 1.19568 1.20160 1.19532 0.92877 0.92619 0.92069 0.88764 0.90557 0.76713 0.77178 0.91080 0.90785 0.94008 0.90252 0.92612 0.95120 0.90587 0.83091 0.93720 0.89412 0.79667 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.46 5.93 -27.88 -0.17 -0.63 16 3 C 0.10 1.02 6.40 -82.51 -0.53 0.50 16 4 N -0.50 -4.66 11.20 -10.64 -0.12 -4.78 16 5 C 0.22 1.23 13.01 -90.57 -1.18 0.05 16 6 N -0.56 -2.77 6.07 -10.79 -0.07 -2.84 16 7 H 0.42 0.67 8.32 -40.82 -0.34 0.33 16 8 C -0.09 -0.82 7.08 -82.14 -0.58 -1.40 16 9 C 0.59 5.72 7.79 -12.82 -0.10 5.62 16 10 O -0.52 -6.55 14.82 5.20 0.08 -6.47 16 11 N -0.73 -5.21 5.28 -61.60 -0.33 -5.53 16 12 C 0.13 0.99 5.06 -4.04 -0.02 0.97 16 13 C -0.10 -0.81 2.57 -90.62 -0.23 -1.04 16 14 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.14 -1.20 8.95 37.16 0.33 -0.87 16 16 C 0.07 0.66 5.07 -3.82 -0.02 0.64 16 17 N -0.67 -9.25 5.58 -115.06 -0.64 -9.89 16 18 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 19 C 0.45 9.89 7.82 -10.99 -0.09 9.81 16 20 O -0.57 -14.77 15.78 5.54 0.09 -14.68 16 21 N -0.59 -13.79 5.09 -10.96 -0.06 -13.84 16 22 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 23 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 26 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.95 6.48 -51.93 -0.34 0.62 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.22 0.23 8.06 -52.49 -0.42 -0.19 16 36 H 0.39 1.86 6.90 -40.82 -0.28 1.58 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.28 7.18 -51.93 -0.37 -0.10 16 40 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.35 5.05 8.43 -39.29 -0.33 4.72 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -36.20 399.93 -8.80 -44.99 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.35 Total: 11.41 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -2.49 Total: 5.90 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.43 Total: -61.59 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.16 Total: -21.16 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.20 -8.80 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753640519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.194 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds