Wall clock time and date at job start Tue Mar 31 2020 19:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46725 * 2 1 4 4 N 1.33319 * 126.11058 * 90.02454 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47165 * 179.70725 * 6 5 4 8 8 C 1.36670 * 126.10423 * 269.98138 * 3 2 1 9 9 C 1.46757 * 126.84532 * 0.06955 * 8 3 2 10 10 O 1.21682 * 120.00349 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00161 * 180.02562 * 9 8 3 12 12 C 1.46498 * 120.00165 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46987 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.47494 * 54.99530 * 13 12 11 15 15 C 1.53003 * 109.47043 * 294.99612 * 13 12 11 16 16 C 1.52999 * 109.47057 * 174.99951 * 13 12 11 17 17 N 1.46901 * 109.47103 * 184.99524 * 16 13 12 18 18 C 1.46898 * 111.00108 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.47295 * 180.02562 * 18 17 16 20 20 O 1.21296 * 120.00007 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00348 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00323 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00044 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00083 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00122 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99965 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47165 * 89.99954 * 26 24 22 28 28 H 1.48501 * 109.46590 * 209.99948 * 26 24 22 29 29 H 1.48502 * 109.46924 * 329.99376 * 26 24 22 30 30 H 1.08997 * 109.47141 * 299.99866 * 1 2 3 31 31 H 1.09000 * 109.47194 * 60.00364 * 1 2 3 32 32 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47141 * 240.00134 * 2 1 3 34 34 H 1.09000 * 109.47194 * 119.99636 * 2 1 3 35 35 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99259 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47141 * 299.99856 * 12 11 9 38 38 H 1.08990 * 109.47096 * 59.99937 * 12 11 9 39 39 H 1.09002 * 109.46773 * 60.00113 * 15 13 12 40 40 H 1.08999 * 109.47174 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.47242 * 300.00310 * 15 13 12 42 42 H 1.08998 * 109.47259 * 304.99200 * 16 13 12 43 43 H 1.09001 * 109.47373 * 65.00024 * 16 13 12 44 44 H 1.00902 * 111.00106 * 56.04846 * 17 16 13 45 45 H 1.08994 * 109.47280 * 300.00241 * 18 17 16 46 46 H 1.08998 * 109.46934 * 60.00320 * 18 17 16 47 47 H 0.97004 * 119.99799 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00234 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2946 2.1615 1.0771 5 6 2.7133 3.3448 0.7071 6 7 2.7289 3.4074 -0.6363 7 1 2.9929 4.1697 -1.1750 8 6 2.3010 2.1800 -1.1042 9 6 2.1567 1.7746 -2.5073 10 8 1.7598 0.6572 -2.7800 11 7 2.4637 2.6401 -3.4938 12 6 2.3191 2.2356 -4.8944 13 6 2.7310 3.3941 -5.8049 14 1 3.7397 3.7175 -5.5478 15 6 1.7584 4.5604 -5.6180 16 6 2.6996 2.9326 -7.2633 17 7 3.2088 4.0058 -8.1276 18 6 3.1939 3.5972 -9.5386 19 6 3.7225 4.7207 -10.3925 20 8 4.0772 5.7596 -9.8765 21 7 3.8010 4.5714 -11.7297 22 6 4.2814 5.5937 -12.5066 23 1 4.5965 6.5189 -12.0472 24 6 4.3629 5.4394 -13.8851 25 7 4.8229 6.4195 -14.6299 26 14 3.8172 3.8393 -14.6798 27 1 2.3752 3.9242 -15.0240 28 1 4.6080 3.6053 -15.9148 29 1 4.0349 2.7167 -13.7324 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.9963 4.1454 1.3744 36 1 2.7804 3.5308 -3.2764 37 1 2.9574 1.3744 -5.0917 38 1 1.2803 1.9705 -5.0906 39 1 1.7808 4.8891 -4.5790 40 1 2.0521 5.3859 -6.2663 41 1 0.7497 4.2370 -5.8751 42 1 3.3243 2.0468 -7.3777 43 1 1.6746 2.6935 -7.5468 44 1 4.1343 4.2903 -7.8437 45 1 3.8222 2.7161 -9.6683 46 1 2.1725 3.3624 -9.8380 47 1 3.5170 3.7408 -12.1424 48 1 4.8795 6.3120 -15.5923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753640519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:12 Heat of formation + Delta-G solvation = -53.923677 kcal Electronic energy + Delta-G solvation = -27869.948805 eV Core-core repulsion = 23766.138037 eV Total energy + Delta-G solvation = -4103.810768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24570 -40.54170 -40.27181 -38.29184 -36.30554 -35.82594 -35.10047 -33.79195 -33.55079 -32.78470 -30.20792 -28.95234 -27.69301 -26.51069 -25.11620 -24.26279 -23.55243 -22.07893 -21.71712 -21.26697 -20.62739 -20.20046 -19.63512 -17.81313 -17.25967 -17.11578 -17.03433 -16.81445 -16.65817 -16.03196 -15.79716 -15.70051 -15.38608 -15.31096 -14.94002 -14.84833 -14.70201 -14.41047 -14.37771 -14.33666 -13.83029 -13.46895 -13.31338 -13.23240 -13.03297 -12.87523 -12.41787 -12.41559 -12.07250 -12.03122 -11.99084 -11.91904 -11.74071 -11.51436 -11.50340 -11.04863 -10.91518 -10.43489 -10.26830 -10.24924 -9.52916 -9.29958 -8.41701 -6.02586 0.23622 1.30184 1.35648 1.44338 1.84497 1.85191 1.95875 2.11638 2.22703 2.22802 2.75265 3.14861 3.41134 3.50570 3.74139 3.84755 3.92992 4.03135 4.10037 4.18067 4.20680 4.44080 4.48245 4.49018 4.53390 4.55801 4.62742 4.66232 4.74540 4.78188 4.82555 4.95561 5.04728 5.07402 5.17201 5.25066 5.29471 5.37397 5.51192 5.52171 5.52384 5.90100 6.04183 6.28788 6.39429 6.42147 6.59492 6.87868 6.92129 7.05145 7.39814 7.96219 8.75831 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.001554 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.742165 B =18009.196815 C =18674.687924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C 0.082 3.918 4 N -0.536 5.536 5 C 0.239 3.761 6 N -0.541 5.541 7 H 0.440 0.560 8 C -0.108 4.108 9 C 0.593 3.407 10 O -0.556 6.556 11 N -0.713 5.713 12 C 0.133 3.867 13 C -0.088 4.088 14 H 0.083 0.917 15 C -0.137 4.137 16 C 0.067 3.933 17 N -0.681 5.681 18 C 0.062 3.938 19 C 0.448 3.552 20 O -0.614 6.614 21 N -0.592 5.592 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.276 1.276 29 H -0.231 1.231 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.261 0.739 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.344 0.656 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -12.543 29.078 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.053 4.053 4 N -0.256 5.256 5 C -0.045 4.045 6 N -0.147 5.147 7 H 0.282 0.718 8 C -0.224 4.224 9 C 0.380 3.620 10 O -0.434 6.434 11 N -0.365 5.365 12 C 0.009 3.991 13 C -0.107 4.107 14 H 0.102 0.898 15 C -0.194 4.194 16 C -0.063 4.063 17 N -0.313 5.313 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.575 5.575 26 Si 0.784 3.216 27 H -0.182 1.182 28 H -0.201 1.201 29 H -0.154 1.154 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.276 0.724 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.163 0.837 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.562 -12.496 29.733 33.127 hybrid contribution 1.129 0.338 -1.987 2.310 sum -6.433 -12.158 27.746 30.969 Atomic orbital electron populations 1.21543 0.93895 1.02403 1.00947 1.20036 0.96644 0.88997 1.03183 1.21250 0.99119 0.97476 0.87440 1.70138 1.20241 1.04380 1.30854 1.26069 0.98346 0.97639 0.82468 1.43274 1.49851 1.12553 1.09027 0.71810 1.20736 1.17702 0.89661 0.94317 1.16957 0.77255 0.84579 0.83221 1.90819 1.47884 1.21273 1.83425 1.45742 1.67681 1.16996 1.06088 1.21317 1.01986 0.97016 0.78803 1.21215 1.00963 0.95059 0.93494 0.89844 1.21715 0.98608 0.97789 1.01326 1.21971 1.01246 0.91730 0.91319 1.60033 1.31693 1.39012 1.00609 1.21620 1.03040 0.93725 0.88685 1.21015 0.82538 0.90302 0.82517 1.90539 1.53878 1.32024 1.73380 1.42044 1.59236 1.15674 1.06385 1.19014 1.41125 0.95959 0.89786 0.92628 1.26108 0.96699 1.02565 0.95947 1.69802 1.46380 1.34692 1.06599 0.85371 0.79314 0.77871 0.79003 1.18225 1.20093 1.15419 0.92874 0.94036 0.90948 0.90123 0.90251 0.72356 0.75602 0.91357 0.91323 0.91977 0.92809 0.92953 0.93680 0.89982 0.83693 0.90622 0.86894 0.77487 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.89 71.98 0.71 -1.52 16 2 C -0.05 -0.95 5.93 29.85 0.18 -0.77 16 3 C 0.08 1.59 6.40 41.97 0.27 1.86 16 4 N -0.54 -9.35 11.20 -187.58 -2.10 -11.45 16 5 C 0.24 2.00 13.01 180.33 2.35 4.35 16 6 N -0.54 -4.07 6.07 -188.04 -1.14 -5.22 16 7 H 0.44 0.02 8.32 -92.71 -0.77 -0.75 16 8 C -0.11 -1.75 7.08 40.01 0.28 -1.46 16 9 C 0.59 10.91 7.79 86.47 0.67 11.58 16 10 O -0.56 -14.04 14.82 -4.29 -0.06 -14.10 16 11 N -0.71 -8.91 5.28 -467.02 -2.47 -11.37 16 12 C 0.13 1.84 5.06 86.38 0.44 2.27 16 13 C -0.09 -1.22 2.57 -10.79 -0.03 -1.25 16 14 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 15 C -0.14 -2.10 8.95 71.98 0.64 -1.45 16 16 C 0.07 1.15 5.07 86.30 0.44 1.58 16 17 N -0.68 -17.58 5.58 -517.95 -2.89 -20.47 16 18 C 0.06 1.75 6.17 85.56 0.53 2.28 16 19 C 0.45 19.54 7.82 87.66 0.69 20.23 16 20 O -0.61 -33.00 15.78 -3.08 -0.05 -33.05 16 21 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 22 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 23 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.93 -55.89 13.96 21.66 0.30 -55.58 16 26 Si 0.96 38.26 27.74 68.60 1.90 40.16 16 27 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 28 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.72 6.48 -2.39 -0.02 1.70 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.26 -0.53 8.06 -2.91 -0.02 -0.55 16 36 H 0.41 2.80 6.90 -92.71 -0.64 2.16 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.67 7.18 -2.39 -0.02 0.66 16 40 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 41 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.34 9.51 8.43 -89.69 -0.76 8.76 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.39 14.82 5.76 -92.71 -0.53 14.28 16 48 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -85.68 399.93 -1.32 -87.00 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -1.74 Total: 33.84 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 8.49 Total: 19.11 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -9.86 Total: -132.96 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.11 Total: -47.15 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.90 Total: 40.16 kcal Total: -85.68 -1.32 -87.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753640519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.075 kcal (2) G-P(sol) polarization free energy of solvation -85.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds