Wall clock time and date at job start Tue Mar 31 2020 19:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46778 * 2 1 4 4 N 1.33319 * 126.10981 * 270.02329 * 3 2 1 5 5 C 1.30863 * 109.68582 * 179.97438 * 4 3 2 6 6 N 1.34492 * 109.16057 * 359.73300 * 5 4 3 7 7 H 0.97004 * 126.47133 * 180.29212 * 6 5 4 8 8 C 1.36661 * 126.10357 * 90.00875 * 3 2 1 9 9 C 1.46767 * 126.84948 * 0.02562 * 8 3 2 10 10 O 1.21684 * 119.99294 * 0.02562 * 9 8 3 11 11 N 1.34770 * 120.00327 * 180.02562 * 9 8 3 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46596 * 325.00243 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.52997 * 109.47473 * 205.00145 * 12 11 9 16 16 C 1.53001 * 109.47049 * 64.99864 * 15 12 11 17 17 N 1.46898 * 109.46911 * 180.02562 * 16 15 12 18 18 C 1.46898 * 110.99940 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47330 * 179.97438 * 18 17 16 20 20 O 1.21291 * 120.00114 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00180 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99795 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00277 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99403 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99405 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00104 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47276 * 90.00275 * 26 24 22 28 28 H 1.48503 * 109.46967 * 209.99808 * 26 24 22 29 29 H 1.48492 * 109.47453 * 329.99830 * 26 24 22 30 30 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47195 * 299.99588 * 1 2 3 32 32 H 1.08991 * 109.47419 * 59.99668 * 1 2 3 33 33 H 1.09000 * 109.46778 * 240.00720 * 2 1 3 34 34 H 1.08997 * 109.47237 * 119.99909 * 2 1 3 35 35 H 1.07997 * 125.41754 * 179.97438 * 5 4 3 36 36 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 38 38 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 40 40 H 1.08998 * 109.47192 * 185.00019 * 15 12 11 41 41 H 1.08998 * 109.46934 * 304.99865 * 15 12 11 42 42 H 1.08998 * 109.47250 * 300.00119 * 16 15 12 43 43 H 1.08998 * 109.47252 * 60.00195 * 16 15 12 44 44 H 1.00907 * 111.00010 * 303.95245 * 17 16 15 45 45 H 1.09011 * 109.47184 * 299.99820 * 18 17 16 46 46 H 1.09003 * 109.47492 * 59.99945 * 18 17 16 47 47 H 0.96999 * 119.99404 * 359.97438 * 21 19 18 48 48 H 0.97003 * 119.99504 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 -1.0771 5 6 2.7117 3.3454 -0.7071 6 7 2.7277 3.4078 0.6363 7 1 2.9913 4.1703 1.1750 8 6 2.3008 2.1800 1.1042 9 6 2.1581 1.7741 2.5073 10 8 1.7638 0.6557 2.7800 11 7 2.4637 2.6400 3.4938 12 6 2.3218 2.2347 4.8944 13 1 1.4631 1.5709 4.9952 14 6 3.5879 1.5027 5.3443 15 6 2.1128 3.4748 5.7657 16 6 0.7832 4.1373 5.3994 17 7 0.5829 5.3284 6.2355 18 6 -0.6871 5.9916 5.9113 19 6 -0.8578 7.2058 6.7875 20 8 -0.0051 7.4909 7.6016 21 7 -1.9575 7.9755 6.6658 22 6 -2.1124 9.0804 7.4625 23 1 -1.3535 9.3338 8.1880 24 6 -3.2464 9.8736 7.3374 25 7 -3.3952 10.9323 8.1014 26 14 -4.5593 9.4348 6.0831 27 1 -5.5611 8.5351 6.7092 28 1 -5.2309 10.6740 5.6155 29 1 -3.9298 8.7468 4.9276 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 2.9947 4.1460 -1.3743 36 1 2.7777 3.5318 3.2765 37 1 4.4466 2.1665 5.2434 38 1 3.4821 1.2007 6.3863 39 1 3.7367 0.6191 4.7236 40 1 2.0961 3.1826 6.8156 41 1 2.9280 4.1786 5.5974 42 1 0.8000 4.4295 4.3494 43 1 -0.0319 3.4335 5.5676 44 1 0.6280 5.0937 7.2159 45 1 -0.6811 6.2963 4.8647 46 1 -1.5123 5.3006 6.0839 47 1 -2.6389 7.7480 6.0139 48 1 -4.1867 11.4863 8.0138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754017993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:27 Heat of formation + Delta-G solvation = -53.877448 kcal Electronic energy + Delta-G solvation = -28464.790509 eV Core-core repulsion = 24360.981746 eV Total energy + Delta-G solvation = -4103.808763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22775 -40.63333 -40.29504 -37.98774 -36.39416 -35.81566 -35.14353 -33.77131 -33.41527 -32.35260 -30.51636 -29.79628 -27.90750 -25.75143 -25.22950 -23.92212 -23.28609 -22.59320 -21.63336 -21.30330 -20.68145 -20.26275 -19.69303 -17.84924 -17.52120 -17.14421 -17.06678 -16.68199 -16.58809 -15.84163 -15.78602 -15.54650 -15.35905 -15.10137 -15.08357 -14.82403 -14.74412 -14.50952 -14.33042 -14.09039 -13.92359 -13.60859 -13.31080 -13.27020 -12.98892 -12.84543 -12.43323 -12.41241 -12.25632 -12.15527 -11.99320 -11.96823 -11.79780 -11.53244 -11.45983 -11.03006 -10.86242 -10.46956 -10.26871 -10.24461 -9.51323 -9.37862 -8.42913 -6.03891 0.26382 1.28977 1.34058 1.43118 1.86457 1.89229 1.93073 2.16353 2.21317 2.25823 2.67588 3.13441 3.33095 3.51865 3.76788 3.91399 3.98754 4.06589 4.11123 4.17174 4.21821 4.38078 4.46494 4.47364 4.49559 4.54418 4.58460 4.66264 4.67512 4.76076 4.81127 4.89369 5.03202 5.08187 5.18956 5.24366 5.29390 5.30993 5.47653 5.50909 5.54034 5.88138 6.01157 6.31679 6.35217 6.44716 6.57658 6.86110 6.94051 7.09895 7.37668 7.93679 8.74588 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.002134 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.215950 B =13116.287665 C =14323.398852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.049 4.049 3 C 0.080 3.920 4 N -0.536 5.536 5 C 0.237 3.763 6 N -0.541 5.541 7 H 0.439 0.561 8 C -0.106 4.106 9 C 0.595 3.405 10 O -0.554 6.554 11 N -0.711 5.711 12 C 0.152 3.848 13 H 0.078 0.922 14 C -0.158 4.158 15 C -0.116 4.116 16 C 0.062 3.938 17 N -0.683 5.683 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.275 1.275 29 H -0.232 1.232 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.258 0.742 36 H 0.407 0.593 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.345 0.655 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.568 -20.737 -19.036 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.054 4.054 4 N -0.256 5.256 5 C -0.047 4.047 6 N -0.147 5.147 7 H 0.282 0.718 8 C -0.223 4.223 9 C 0.383 3.617 10 O -0.432 6.432 11 N -0.362 5.362 12 C 0.047 3.953 13 H 0.096 0.904 14 C -0.216 4.216 15 C -0.154 4.154 16 C -0.066 4.066 17 N -0.315 5.315 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.200 1.200 29 H -0.155 1.155 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.274 0.726 36 H 0.243 0.757 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.164 0.836 45 H 0.130 0.870 46 H 0.090 0.910 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.022 -21.017 -19.372 31.008 hybrid contribution -1.089 0.971 1.154 1.860 sum 10.934 -20.047 -18.218 29.211 Atomic orbital electron populations 1.21545 0.94038 1.02349 1.00906 1.20023 0.96500 0.89015 1.03181 1.21240 0.99250 0.97485 0.87452 1.70135 1.20212 1.04352 1.30925 1.26027 0.98541 0.97630 0.82529 1.43287 1.49806 1.12585 1.08990 0.71845 1.20784 1.17518 0.89476 0.94478 1.16932 0.76989 0.84677 0.83138 1.90811 1.47972 1.21111 1.83356 1.45917 1.67638 1.16741 1.05946 1.20918 0.99160 0.96090 0.79130 0.90419 1.22116 0.97195 1.00187 1.02120 1.21791 0.97545 0.95674 1.00380 1.22025 0.97134 0.89579 0.97908 1.60115 1.33330 1.27741 1.10352 1.21623 0.92767 0.92993 0.99754 1.20970 0.82061 0.86744 0.86605 1.90543 1.43903 1.74364 1.40953 1.42054 1.20489 1.24904 1.35848 1.19009 1.06525 1.03246 1.17021 0.92553 1.26114 1.00175 0.95007 1.00082 1.69804 1.30094 1.16689 1.40788 0.85374 0.78186 0.79187 0.78839 1.18252 1.20004 1.15486 0.90962 0.94054 0.93021 0.90315 0.89996 0.72585 0.75705 0.91433 0.90380 0.93505 0.89459 0.89732 0.90471 0.94952 0.83603 0.86983 0.90955 0.77516 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.89 71.98 0.71 -1.68 16 2 C -0.05 -0.96 5.93 29.85 0.18 -0.78 16 3 C 0.08 1.63 6.40 41.96 0.27 1.90 16 4 N -0.54 -10.02 11.20 -187.59 -2.10 -12.12 16 5 C 0.24 2.36 13.01 180.33 2.35 4.70 16 6 N -0.54 -4.82 6.07 -188.04 -1.14 -5.96 16 7 H 0.44 0.80 8.32 -92.71 -0.77 0.02 16 8 C -0.11 -1.80 7.08 40.01 0.28 -1.52 16 9 C 0.60 11.06 7.75 86.47 0.67 11.73 16 10 O -0.55 -13.90 14.48 -4.30 -0.06 -13.96 16 11 N -0.71 -9.04 4.53 -446.42 -2.02 -11.06 16 12 C 0.15 2.08 2.57 44.99 0.12 2.20 16 13 H 0.08 1.35 7.58 -2.39 -0.02 1.33 16 14 C -0.16 -2.03 9.48 71.98 0.68 -1.35 16 15 C -0.12 -1.58 5.01 30.59 0.15 -1.43 16 16 C 0.06 1.10 5.57 86.30 0.48 1.58 16 17 N -0.68 -17.87 6.13 -517.93 -3.17 -21.04 16 18 C 0.06 1.76 6.17 85.56 0.53 2.28 16 19 C 0.45 19.61 7.82 87.65 0.69 20.29 16 20 O -0.61 -33.08 15.78 -3.06 -0.05 -33.13 16 21 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 22 C -0.33 -19.01 10.16 84.04 0.85 -18.15 16 23 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 24 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 25 N -0.93 -55.71 13.96 21.66 0.30 -55.41 16 26 Si 0.96 38.20 27.74 68.60 1.90 40.11 16 27 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 28 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 29 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.78 6.48 -2.39 -0.02 1.76 16 35 H 0.26 -0.02 8.06 -2.91 -0.02 -0.04 16 36 H 0.41 3.14 7.85 -92.70 -0.73 2.41 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.22 7.75 -2.39 -0.02 1.21 16 43 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.35 9.78 8.43 -89.69 -0.76 9.03 16 45 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 46 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 47 H 0.39 14.85 5.76 -92.71 -0.53 14.31 16 48 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -84.77 401.67 -1.31 -86.08 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -1.83 Total: 35.95 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 8.42 Total: 19.42 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -9.70 Total: -134.46 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.11 Total: -47.09 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.11 kcal Total: -84.77 -1.31 -86.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754017993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.205 kcal (2) G-P(sol) polarization free energy of solvation -84.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds